Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22789 Nelumbo nucifera HOM05D006935 ORTHO05D008944 2.3e-168 595.5 303 100.0
GSVIVG01007766001 Vitis vinifera HOM05D006935 ORTHO05D008944 1.6e-121 439.9 289 77.9
PGR083G2867 Punica granatum HOM05D006935 ORTHO05D008944 4.7e-121 438.3 300 75.0
Sopen03g033350 Solanum pennellii HOM05D006935 ORTHO05D008944 1.0e-120 437.2 303 74.3
PGSC0003DMG400024494 Solanum tuberosum HOM05D006935 ORTHO05D008944 1.0e-120 437.2 293 75.8
Cc04_g13740 Coffea canephora HOM05D006935 ORTHO05D008944 1.4e-120 436.8 310 74.2
Actinidia19311 Actinidia chinensis HOM05D006935 ORTHO05D008944 3.0e-120 435.6 290 77.6
QL10p011920 Quercus lobata HOM05D006935 ORTHO05D008944 8.8e-120 434.1 306 74.5
Thecc.03G010500 Theobroma cacao HOM05D006935 ORTHO05D008944 1.5e-119 433.3 294 76.2
MD14G1182500 Malus domestica HOM05D006935 ORTHO05D008944 4.4e-119 431.8 303 75.2
MSTRG.11442 Avicennia marina HOM05D006935 ORTHO05D008944 1.7e-118 429.9 289 74.7
SGA_v2.0_scaffold90G27953 Striga asiatica HOM05D006935 ORTHO05D008944 1.7e-118 429.9 290 74.5
CiPaw.11G027700 Carya illinoinensis HOM05D006935 ORTHO05D008944 3.7e-118 428.7 295 76.3
CSS0041391 Camellia sinensis var. sinensis HOM05D006935 ORTHO05D008944 6.3e-118 427.9 307 73.6
vmacro19376 Vaccinium macrocarpon HOM05D006935 ORTHO05D008944 6.3e-118 427.9 302 74.5
Haze_07457 Corylus avellana HOM05D006935 ORTHO05D008944 1.8e-117 426.4 306 73.5
HanXRQChr16g0517271 Helianthus annuus HOM05D006935 ORTHO05D008944 1.8e-117 426.4 310 70.6
Manes.06G104000 Manihot esculenta HOM05D006935 ORTHO05D008944 1.8e-117 426.4 279 76.7
Solyc03g114250.4 Solanum lycopersicum HOM05D006935 ORTHO05D008944 2.4e-117 426.0 298 73.8
Lsat_1_v5_gn_5_17180 Lactuca sativa HOM05D006935 ORTHO05D008944 3.1e-117 425.6 278 75.5
FvH4_5g05200 Fragaria vesca HOM05D006935 ORTHO05D008944 3.5e-116 422.2 301 73.1
Rhsim08G0171100 Rhododendron simsii HOM05D006935 ORTHO05D008944 4.5e-116 421.8 272 79.4
Ciclev10021410m.g Citrus clementina HOM05D006935 ORTHO05D008944 7.7e-116 421.0 300 72.3
Cpa.g.sc124.48 Carica papaya HOM05D006935 ORTHO05D008944 1.0e-115 420.6 302 73.8
ECA236G1157 Erigeron canadensis HOM05D006935 ORTHO05D008944 1.0e-115 420.6 289 74.0
CsaV3_1G008420 Cucumis sativus L. HOM05D006935 ORTHO05D008944 1.3e-115 420.2 301 74.4
Nitab4.5_0005862g0020 Nicotiana tabacum HOM05D006935 ORTHO05D008944 1.3e-115 420.2 340 66.8
SalBow5G1860 Salvia bowleyana HOM05D006935 ORTHO05D008944 1.7e-115 419.9 292 74.0
Aqoxy3G02966 Aquilegia oxysepala HOM05D006935 ORTHO05D008944 2.2e-115 419.5 289 75.1
RcHm_v2.0_Chr7g0193711 Rosa chinensis HOM05D006935 ORTHO05D008944 2.2e-115 419.5 300 72.0
Eucgr.B00368 Eucalyptus grandis HOM05D006935 ORTHO05D008944 2.9e-115 419.1 303 73.3
Atru.chr9.2451 Acer truncatum HOM05D006935 ORTHO05D008944 3.8e-115 418.7 298 73.2
Sc12g0005390 Simmondsia chinensis HOM05D006935 ORTHO05D008944 6.5e-115 417.9 303 72.6
COL.COLO4_04599 Corchorus olitorius HOM05D006935 ORTHO05D008944 3.2e-114 415.6 300 73.3
Duzib068G1137 Durio zibethinus HOM05D006935 ORTHO05D008944 3.2e-114 415.6 281 75.4
Gohir.D11G001000 Gossypium hirsutum HOM05D006935 ORTHO05D008944 4.7e-113 411.8 300 71.7
Gorai.007G001900 Gossypium raimondii HOM05D006935 ORTHO05D008944 4.7e-113 411.8 299 71.2
Lj4g0026943 Lotus japonicus HOM05D006935 ORTHO05D008944 4.7e-113 411.8 293 71.7
TWI81G0925 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 2.3e-112 409.5 302 71.9
TWI81G0947 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 2.3e-112 409.5 302 71.9
TAR622G0425 Trochodendron aralioides HOM05D006935 ORTHO05D008944 2.3e-112 409.5 230 87.0
CANSAT80G0279 Cannabis sativa HOM05D006935 ORTHO05D008944 3.0e-112 409.1 243 81.9
Migut.I00022 Erythranthe guttata HOM05D006935 ORTHO05D008944 3.0e-112 409.1 308 69.2
Gohir.A11G001400 Gossypium hirsutum HOM05D006935 ORTHO05D008944 5.2e-112 408.3 300 71.0
Nitab4.5_0000852g0050 Nicotiana tabacum HOM05D006935 ORTHO05D008944 8.8e-112 407.5 299 72.9
AT5G62840 Arabidopsis thaliana HOM05D006935 ORTHO05D008944 2.0e-111 406.4 303 71.6
Potri.015G074700 Populus trichocarpa HOM05D006935 ORTHO05D008944 2.0e-111 406.4 275 76.4
Glyma.05G036900 Glycine max HOM05D006935 ORTHO05D008944 2.6e-111 406.0 292 71.6
Sabra15G0098700 Salix brachista HOM05D006935 ORTHO05D008944 2.6e-111 406.0 305 71.8
Dinv09149 Davidia involucrata HOM05D006935 ORTHO05D008944 3.3e-111 405.6 260 78.8
Cfa019105 Carpinus fangiana HOM05D006935 ORTHO05D004872 1.7e-110 403.3 293 72.4
Lalb_Chr07g0182691 Lupinus albus HOM05D006935 ORTHO05D008944 2.2e-110 402.9 304 68.8
VMungo1215G2532 Vigna mungo HOM05D006935 ORTHO05D008944 2.2e-110 402.9 266 76.3
Aa31LG11G860 Aethionema arabicum HOM05D006935 ORTHO05D008944 2.8e-110 402.5 302 69.9
MBI16_g05651_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 3.7e-110 402.1 230 85.7
CARHR276620 Cardamine hirsuta HOM05D006935 ORTHO05D008944 4.8e-110 401.7 302 69.5
ClCG01G013080 Citrullus lanatus HOM05D006935 ORTHO05D008944 4.8e-110 401.7 289 75.4
AL8G39840 Arabidopsis lyrata HOM05D006935 ORTHO05D008944 8.2e-110 401.0 301 70.1
BcaB02g09696 Brassica carinata HOM05D006935 ORTHO05D008944 8.2e-110 401.0 300 71.0
Phvul.003G199600 Phaseolus vulgaris HOM05D006935 ORTHO05D008944 8.2e-110 401.0 292 71.2
THA.LOC104798977 Tarenaya hassleriana HOM05D006935 ORTHO05D008944 8.2e-110 401.0 239 82.0
BcaC01g02525 Brassica carinata HOM05D006935 ORTHO05D008944 1.1e-109 400.6 301 70.1
C03p63900 Brassica napus HOM05D006935 ORTHO05D008944 1.1e-109 400.6 301 70.1
BolC3t18645H Brassica oleracea HOM05D006935 ORTHO05D008944 1.1e-109 400.6 301 70.1
Carub.0008s2355 Capsella rubella HOM05D006935 ORTHO05D008944 1.4e-109 400.2 302 68.5
Sp2g25990 Schrenkiella parvula HOM05D006935 ORTHO05D008944 1.4e-109 400.2 300 70.0
Thhalv10004703m.g Eutrema salsugineum HOM05D006935 ORTHO05D008944 1.8e-109 399.8 300 70.0
FAN04G2667 Fragaria x ananassa HOM05D006935 ORTHO05D008944 1.8e-109 399.8 274 74.8
MBI16_g32800_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 1.8e-109 399.8 305 69.8
MELO3C002259.2 Cucumis melo HOM05D006935 ORTHO05D008944 2.4e-109 399.4 281 75.4
Ah.02g110460 Amaranthus hybridus HOM05D006935 ORTHO05D008944 3.1e-109 399.1 287 70.4
BraA06t25905Z Brassica rapa HOM05D006935 ORTHO05D008944 5.3e-109 398.3 301 69.4
FAN18G4193 Fragaria x ananassa HOM05D006935 ORTHO05D004872 9.1e-109 397.5 274 74.1
Medtr4g106970 Medicago truncatula HOM05D006935 ORTHO05D008944 2.0e-108 396.4 289 69.9
AUR62008221 Chenopodium quinoa HOM05D006935 ORTHO05D008944 3.5e-108 395.6 239 82.4
Hund09430 Selenicereus undatus HOM05D006935 ORTHO05D004872 4.5e-108 395.2 288 71.9
A06p29590 Brassica napus HOM05D006935 ORTHO05D008944 7.7e-108 394.4 301 68.8
TPR.G37522 Trifolium pratense HOM05D006935 ORTHO05D008944 1.0e-107 394.0 290 70.3
unitig_749.g13472 Utricularia gibba HOM05D006935 ORTHO05D008944 1.6e-105 386.7 270 71.9
PSO302G0172 Papaver somniferum HOM05D006935 ORTHO05D008944 4.7e-105 385.2 303 67.7
EL10Ac5g10748 Beta vulgaris HOM05D006935 ORTHO05D008944 6.1e-105 384.8 230 80.4
CAN.G781.17 Capsicum annuum HOM05D006935 ORTHO05D008944 1.3e-102 377.1 261 76.2
Os01g0660900 Oryza sativa ssp. japonica HOM05D006935 ORTHO05D008944 1.8e-101 373.2 238 76.5
Oeu016368.1 Olea europaea HOM05D006935 ORTHO05D008944 4.1e-101 372.1 306 66.7
HPP92_024712 Vanilla planifolia HOM05D006935 ORTHO05D008944 5.4e-101 371.7 297 66.0
AUR62030975 Chenopodium quinoa HOM05D006935 ORTHO05D008944 9.1e-101 370.9 234 79.1
Zm00001eb359580 Zea mays HOM05D006935 ORTHO05D008944 4.5e-100 368.6 292 65.1
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 3.8e-99 365.5 261 70.1
Peaxi162Scf00017g02821 Petunia axillaris HOM05D006935 ORTHO05D008944 6.5e-99 364.8 266 72.2
SEGI_12501 Sequoiadendron giganteum HOM05D006935 ORTHO05D008944 4.7e-97 358.6 248 69.4
Pp3c16_7000 Physcomitrium patens HOM05D006935 ORTHO05D008944 2.9e-91 339.3 251 67.7
Psat4g057680 Pisum sativum HOM05D006935 ORTHO05D008944 3.6e-89 332.4 251 68.9
Ca_21910_v3 Cicer arietinum L. HOM05D006935 ORTHO05D008944 4.7e-89 332.0 251 68.1
ATR0730G238 Amborella trichopoda HOM05D006935 ORTHO05D008944 6.6e-83 311.6 288 59.4
Mapoly0091s0071 Marchantia polymorpha HOM05D006935 ORTHO05D008944 9.5e-82 307.8 260 59.2
Peaxi162Scf00017g02830 Petunia axillaris HOM05D006935 ORTHO05D008944 4.7e-81 305.4 209 76.1
FAN08G3443 Fragaria x ananassa HOM05D006935 ORTHO05D004872 2.6e-79 299.7 221 71.0
AagrBONN_evm.TU.Sc2ySwM_117.38 Anthoceros agrestis HOM05D006935 ORTHO05D008944 3.9e-75 285.8 198 71.2
SMO141G0200 Selaginella moellendorffii HOM05D006935 ORTHO05D008944 3.6e-73 279.3 182 74.2
EL10Ac5g10761 Beta vulgaris HOM05D006935 ORTHO05D008944 4.9e-70 268.9 221 64.7
Prupe.5G175000 Prunus persica HOM05D006935 ORTHO05D008944 1.6e-68 263.8 300 52.7
Hma1.2p1_0176F.1_g077560 Hydrangea macrophylla HOM05D006935 ORTHO05D008944 8.6e-67 258.1 191 70.7
Cre06.g272300 Chlamydomonas reinhardtii HOM05D006935 ORTHO05D008944 5.6e-58 228.8 247 51.8
Sed0005822 Sechium edule HOM05D006935 ORTHO05D008944 1.5e-55 220.7 198 63.6
arahy.Tifrunner.gnm1.ann1.0F4FSZ Arachis hypogaea HOM05D006935 ORTHO05D008944 2.8e-49 199.9 115 80.9
arahy.Tifrunner.gnm1.ann1.209TGD Arachis hypogaea HOM05D006935 ORTHO05D008944 4.8e-49 199.1 115 80.0
Actinidia20183 Actinidia chinensis HOM05D006935 ORTHO05D008944 1.8e-48 197.2 118 82.2
Psat4g057640 Pisum sativum HOM05D006935 ORTHO05D008944 1.6e-41 174.1 232 44.8
Lj5C123T7 Lonicera japonica HOM05D006935 ORTHO05D008944 3.7e-41 172.9 127 66.1
MD06G1175700 Malus domestica HOM05D006935 ORTHO05D008944 1.1e-32 144.8 221 41.2
Lj5C123T8 Lonicera japonica HOM05D006935 ORTHO05D008944 1.0e-30 138.3 77 85.7
PRCOL_00001554 Prasinoderma coloniale HOM05D006935 ORTHO05D008944 2.0e-23 114.0 216 36.6
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 1.8e-19 100.9 209 34.4
Actinidia01759 Actinidia chinensis HOM05D006935 ORTHO05D008944 6.3e-17 92.4 64 75.0
Nn4g24775 Nelumbo nucifera HOM05D006935 ORTHO05D008944 3.3e-10 70.1 33 93.9
Hund09427 Selenicereus undatus HOM05D006935 ORTHO05D008944 2.8e-09 67.0 43 74.4
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 8.2e-09 65.5 205 29.3
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 1.7e-06 57.8 188 29.3


User provided reference genes

Program Settings