Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22787 Nelumbo nucifera HOM05D004077 ORTHO05D004872 3.1e-161 571.6 268 100.0
Dinv09148 Davidia involucrata HOM05D004077 ORTHO05D004872 1.8e-148 529.3 257 94.9
Eucgr.B00369 Eucalyptus grandis HOM05D004077 ORTHO05D004872 4.4e-147 524.6 257 93.4
TAR629G0666 Trochodendron aralioides HOM05D004077 ORTHO05D004872 5.7e-147 524.2 257 94.6
MBI10_g10241_MAGBIO Magnolia biondii HOM05D004077 ORTHO05D004872 7.5e-147 523.9 257 94.9
Manes.14G066700 Manihot esculenta HOM05D004077 ORTHO05D004872 1.3e-146 523.1 257 94.2
Ciclev10020585m.g Citrus clementina HOM05D004077 ORTHO05D004872 2.2e-146 522.3 257 93.8
Thecc.03G010600 Theobroma cacao HOM05D004077 ORTHO05D004872 4.8e-146 521.2 257 94.2
Manes.06G104100 Manihot esculenta HOM05D004077 ORTHO05D004872 6.3e-146 520.8 257 93.8
Dinv20664 Davidia involucrata HOM05D004077 ORTHO05D004872 1.4e-145 519.6 257 93.0
Gorai.005G136200 Gossypium raimondii HOM05D004077 ORTHO05D004872 1.4e-145 519.6 257 93.8
Gohir.A03G096433 Gossypium hirsutum HOM05D004077 ORTHO05D004872 1.8e-145 519.2 257 93.8
Nn3g16881 Nelumbo nucifera HOM05D004077 ORTHO05D004872 1.8e-145 519.2 247 98.8
TAR371G1277 Trochodendron aralioides HOM05D004077 ORTHO05D004872 1.8e-145 519.2 283 87.3
Aqoxy3G02964 Aquilegia oxysepala HOM05D004077 ORTHO05D004872 4.1e-145 518.1 257 91.8
Duzib205G1726 Durio zibethinus HOM05D004077 ORTHO05D004872 5.9e-144 514.2 257 92.6
Medtr4g106960 Medicago truncatula HOM05D004077 ORTHO05D004872 1.3e-143 513.1 257 91.1
CiPaw.11G027500 Carya illinoinensis HOM05D004077 ORTHO05D004872 2.9e-143 511.9 257 92.2
Glyma.05G037000 Glycine max HOM05D004077 ORTHO05D004872 6.5e-143 510.8 257 91.8
Cc04_g13750 Coffea canephora HOM05D004077 ORTHO05D004872 1.1e-142 510.0 257 92.2
Atru.chr9.2453_Atru.chr9.2454 Acer truncatum HOM05D004077 ORTHO05D004872 1.9e-142 509.2 257 89.9
QL10p011905 Quercus lobata HOM05D004077 ORTHO05D004872 5.5e-142 507.7 257 91.8
Sopen03g033380 Solanum pennellii HOM05D004077 ORTHO05D004872 5.5e-142 507.7 257 90.3
Solyc03g114280.3 Solanum lycopersicum HOM05D004077 ORTHO05D004872 7.2e-142 507.3 257 89.9
Actinidia19095 Actinidia chinensis HOM05D004077 ORTHO05D004872 1.6e-141 506.1 257 90.3
Phvul.003G199700 Phaseolus vulgaris HOM05D004077 ORTHO05D004872 1.6e-141 506.1 257 91.4
TWI15G0436 Tripterygium wilfordii HOM05D004077 ORTHO05D004872 2.7e-141 505.4 258 90.3
Glyma.17G090200 Glycine max HOM05D004077 ORTHO05D004872 3.6e-141 505.0 257 90.7
Lj5C123T9 Lonicera japonica HOM05D004077 ORTHO05D004872 3.6e-141 505.0 276 85.9
Potri.015G074900 Populus trichocarpa HOM05D004077 ORTHO05D004872 3.6e-141 505.0 257 91.4
Prupe.5G174900 Prunus persica HOM05D004077 ORTHO05D004872 4.7e-141 504.6 257 89.5
CSS0015009 Camellia sinensis var. sinensis HOM05D004077 ORTHO05D004872 6.1e-141 504.2 257 91.1
CANSAT80G1493 Cannabis sativa HOM05D004077 ORTHO05D004872 6.1e-141 504.2 257 90.7
TPR.G37440 Trifolium pratense HOM05D004077 ORTHO05D004872 6.1e-141 504.2 257 88.7
Ca_21911_v3 Cicer arietinum L. HOM05D004077 ORTHO05D004872 2.3e-140 502.3 257 88.7
MD06G1175600 Malus domestica HOM05D004077 ORTHO05D004872 4.0e-140 501.5 257 89.1
RcHm_v2.0_Chr7g0193701 Rosa chinensis HOM05D004077 ORTHO05D004872 4.0e-140 501.5 257 90.7
ATR0730G177 Amborella trichopoda HOM05D004077 ORTHO05D004872 5.2e-140 501.1 257 90.3
PGR083G2191 Punica granatum HOM05D004077 ORTHO05D004872 5.2e-140 501.1 267 88.4
Rhsim12G0164000 Rhododendron simsii HOM05D004077 ORTHO05D004872 5.2e-140 501.1 257 89.5
FvH4_5g05210 Fragaria vesca HOM05D004077 ORTHO05D004872 4.4e-139 498.0 257 89.9
FAN13G2227 Fragaria x ananassa HOM05D004077 ORTHO05D004872 5.7e-139 497.7 262 88.9
THA.LOC104818231 Tarenaya hassleriana HOM05D004077 ORTHO05D004872 5.7e-139 497.7 255 90.2
GSVIVG01007765001 Vitis vinifera HOM05D004077 ORTHO05D004872 5.7e-139 497.7 248 94.0
Os05g0145000 Oryza sativa ssp. japonica HOM05D004077 ORTHO05D004872 7.5e-139 497.3 257 89.9
PGSC0003DMG400024497 Solanum tuberosum HOM05D004077 ORTHO05D004872 7.5e-139 497.3 267 86.5
CsaV3_1G001570 Cucumis sativus L. HOM05D004077 ORTHO05D004872 1.3e-138 496.5 257 88.7
VMungo1215G2971 Vigna mungo HOM05D004077 ORTHO05D004872 3.7e-138 495.0 287 82.2
MELO3C017097.2 Cucumis melo HOM05D004077 ORTHO05D004872 4.8e-138 494.6 257 88.7
Lj4g0025722 Lotus japonicus HOM05D004077 ORTHO05D004872 6.3e-138 494.2 257 87.5
Cpa.g.sc124.49 Carica papaya HOM05D004077 ORTHO05D004872 8.3e-138 493.8 286 82.5
THA.LOC104798981 Tarenaya hassleriana HOM05D004077 ORTHO05D004872 1.1e-137 493.4 257 87.9
PSO017G1896 Papaver somniferum HOM05D004077 ORTHO05D004872 1.8e-137 492.7 258 88.0
Potri.012G079600 Populus trichocarpa HOM05D004077 ORTHO05D004872 4.1e-137 491.5 257 89.1
PSO478G1894 Papaver somniferum HOM05D004077 ORTHO05D004872 5.4e-137 491.1 258 88.0
Migut.D01921 Erythranthe guttata HOM05D004077 ORTHO05D004872 7.0e-137 490.7 257 86.4
Hma1.2p1_0176F.1_g077530 Hydrangea macrophylla HOM05D004077 ORTHO05D004872 7.0e-137 490.7 290 81.7
MSTRG.23125 Avicennia marina HOM05D004077 ORTHO05D004872 1.2e-136 490.0 257 86.8
Nitab4.5_0001017g0030 Nicotiana tabacum HOM05D004077 ORTHO05D004872 7.7e-136 487.3 255 87.8
CsaV3_1G008430 Cucumis sativus L. HOM05D004077 ORTHO05D004872 1.7e-135 486.1 257 86.0
SGA_v2.0_scaffold90G27947 Striga asiatica HOM05D004077 ORTHO05D004872 5.0e-135 484.6 257 85.6
Migut.I00021 Erythranthe guttata HOM05D004077 ORTHO05D004872 6.5e-135 484.2 257 85.6
HanXRQChr16g0517301 Helianthus annuus HOM05D004077 ORTHO05D004872 6.5e-135 484.2 258 88.4
AUR62030973 Chenopodium quinoa HOM05D004077 ORTHO05D004872 8.6e-135 483.8 258 86.4
Nitab4.5_0000003g0530 Nicotiana tabacum HOM05D004077 ORTHO05D004872 1.5e-134 483.0 255 87.1
Gohir.D02G117400 Gossypium hirsutum HOM05D004077 ORTHO05D004872 1.9e-134 482.6 240 93.3
ECA246G0603 Erigeron canadensis HOM05D004077 ORTHO05D004872 2.5e-134 482.3 258 86.4
Duzib068G0125 Durio zibethinus HOM05D004077 ORTHO05D004872 3.3e-134 481.9 271 85.2
Lsat_1_v5_gn_5_17200 Lactuca sativa HOM05D004077 ORTHO05D004872 3.3e-134 481.9 258 86.4
Zm00001eb162790 Zea mays HOM05D004077 ORTHO05D004872 3.3e-134 481.9 257 87.9
AUR62008220 Chenopodium quinoa HOM05D004077 ORTHO05D004872 4.2e-134 481.5 258 86.0
Sed0017203 Sechium edule HOM05D004077 ORTHO05D004872 2.1e-133 479.2 259 86.5
Sed0006960 Sechium edule HOM05D004077 ORTHO05D004872 3.6e-133 478.4 259 86.1
Lalb_Chr13g0297851 Lupinus albus HOM05D004077 ORTHO05D004872 8.0e-133 477.2 257 83.7
MSTRG.4378 Avicennia marina HOM05D004077 ORTHO05D004872 1.0e-132 476.9 257 84.8
Sp5g13990 Schrenkiella parvula HOM05D004077 ORTHO05D004872 1.0e-132 476.9 257 84.4
PGSC0003DMG400027094 Solanum tuberosum HOM05D004077 ORTHO05D004872 1.4e-132 476.5 255 86.3
MD14G1182400 Malus domestica HOM05D004077 ORTHO05D004872 1.8e-132 476.1 247 87.9
Solyc06g071420.3 Solanum lycopersicum HOM05D004077 ORTHO05D004872 2.3e-132 475.7 255 86.3
Sopen06g027700 Solanum pennellii HOM05D004077 ORTHO05D004872 2.3e-132 475.7 255 86.3
Lsat_1_v5_gn_4_75421 Lactuca sativa HOM05D004077 ORTHO05D004872 4.0e-132 474.9 258 84.9
BcaB05g22899 Brassica carinata HOM05D004077 ORTHO05D004872 2.6e-131 472.2 257 84.4
HPP92_003097 Vanilla planifolia HOM05D004077 ORTHO05D004872 2.6e-131 472.2 257 85.2
CARHR156710 Cardamine hirsuta HOM05D004077 ORTHO05D004872 3.4e-131 471.9 257 83.7
vmacro16604 Vaccinium macrocarpon HOM05D004077 ORTHO05D004872 7.5e-131 470.7 320 72.5
COL.COLO4_04600 Corchorus olitorius HOM05D004077 ORTHO05D004872 9.8e-131 470.3 271 82.7
Nitab4.5_0000852g0060 Nicotiana tabacum HOM05D004077 ORTHO05D004872 3.7e-130 468.4 236 90.7
unitig_749.g13473 Utricularia gibba HOM05D004077 ORTHO05D004872 3.7e-130 468.4 258 83.3
arahy.Tifrunner.gnm1.ann1.7S5VF9 Arachis hypogaea HOM05D004077 ORTHO05D004872 6.3e-130 467.6 257 82.5
MSTRG.11443 Avicennia marina HOM05D004077 ORTHO05D004872 6.3e-130 467.6 257 82.9
AL5G27310 Arabidopsis lyrata HOM05D004077 ORTHO05D004872 8.3e-130 467.2 257 83.3
Carub.0005s1410 Capsella rubella HOM05D004077 ORTHO05D004872 1.1e-129 466.8 257 82.9
CARHR276610 Cardamine hirsuta HOM05D004077 ORTHO05D004872 1.1e-129 466.8 263 82.9
BcaC09g49837 Brassica carinata HOM05D004077 ORTHO05D004872 1.4e-129 466.5 258 83.7
Lj1g0011621 Lotus japonicus HOM05D004077 ORTHO05D004872 1.2e-128 463.4 257 82.1
Sc12g0005380 Simmondsia chinensis HOM05D004077 ORTHO05D004872 7.8e-128 460.7 234 89.7
BolC1t03179H Brassica oleracea HOM05D004077 ORTHO05D004872 1.7e-127 459.5 266 81.2
HanXRQChr09g0272261 Helianthus annuus HOM05D004077 ORTHO05D004872 1.7e-127 459.5 258 82.9
arahy.Tifrunner.gnm1.ann1.TGZ6UB Arachis hypogaea HOM05D004077 ORTHO05D004872 3.8e-127 458.4 270 78.5
Aa31LG4G16630 Aethionema arabicum HOM05D004077 ORTHO05D004872 6.6e-127 457.6 291 77.0
C01p32380 Brassica napus HOM05D004077 ORTHO05D004872 6.6e-127 457.6 261 82.0
BraA01t02485Z Brassica rapa HOM05D004077 ORTHO05D004872 1.5e-126 456.4 268 80.2
SGA_v2.0_scaffold25G10850 Striga asiatica HOM05D004077 ORTHO05D004872 1.5e-126 456.4 273 79.5
BcaC07g39282 Brassica carinata HOM05D004077 ORTHO05D004872 2.5e-126 455.7 257 80.2
C08p22910 Brassica napus HOM05D004077 ORTHO05D004872 2.5e-126 455.7 257 80.2
A06p19650 Brassica napus HOM05D004077 ORTHO05D004872 3.3e-126 455.3 257 80.9
A01p25360 Brassica napus HOM05D004077 ORTHO05D004872 4.3e-126 454.9 261 81.6
BolC8t49927H Brassica oleracea HOM05D004077 ORTHO05D004872 1.0e-124 450.3 265 78.1
BraA06t25045Z Brassica rapa HOM05D004077 ORTHO05D004872 1.8e-124 449.5 265 78.9
Glyma.04G182100 Glycine max HOM05D004077 ORTHO05D004872 2.3e-124 449.1 257 80.5
Aqoxy3G01025 Aquilegia oxysepala HOM05D004077 ORTHO05D004872 4.0e-124 448.4 257 81.3
Lalb_Chr08g0236431 Lupinus albus HOM05D004077 ORTHO05D004872 4.0e-124 448.4 257 79.8
BcaB02g10676 Brassica carinata HOM05D004077 ORTHO05D004872 6.8e-124 447.6 257 80.2
ECA232G0181 Erigeron canadensis HOM05D004077 ORTHO05D004872 6.8e-124 447.6 258 81.4
Glyma.06G183300 Glycine max HOM05D004077 ORTHO05D004872 2.0e-123 446.0 257 79.4
Peaxi162Scf00017g02833 Petunia axillaris HOM05D004077 ORTHO05D004872 1.1e-121 440.3 268 78.4
Sed0004154 Sechium edule HOM05D004077 ORTHO05D004872 1.2e-120 436.8 234 83.8
Sp2g25980 Schrenkiella parvula HOM05D004077 ORTHO05D004872 1.6e-120 436.4 255 78.0
Nitab4.5_0005862g0030 Nicotiana tabacum HOM05D004077 ORTHO05D004872 4.6e-120 434.9 218 91.3
Peaxi162Scf00689g00326 Petunia axillaris HOM05D004077 ORTHO05D004872 1.0e-119 433.7 247 83.0
Oeu022165.5 Olea europaea HOM05D004077 ORTHO05D004872 2.3e-119 432.6 278 75.9
Cfa019105 Carpinus fangiana HOM05D006935 ORTHO05D004872 4.7e-117 424.9 212 92.9
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 1.1e-116 423.7 212 92.5
Psat4g057720 Pisum sativum HOM05D004077 ORTHO05D004872 1.4e-116 423.3 257 78.6
Duzib084G0606 Durio zibethinus HOM05D004077 ORTHO05D004872 4.0e-116 421.8 215 90.2
Hund09430 Selenicereus undatus HOM05D006935 ORTHO05D004872 6.4e-114 414.5 213 89.2
ClCG01G013080 Citrullus lanatus HOM05D006935 ORTHO05D008944 2.3e-111 406.0 247 77.3
CDE06G1420 Ceratophyllum demersum HOM05D004077 ORTHO05D004872 3.0e-111 405.6 200 93.5
ECA247G0373 Erigeron canadensis HOM05D004077 ORTHO05D004872 5.1e-111 404.8 263 71.1
Haze_07458 Corylus avellana HOM05D004077 ORTHO05D004872 6.6e-111 404.4 200 93.0
DCAR_031316 Daucus carota HOM05D004077 ORTHO05D004872 1.1e-110 403.7 201 93.0
Ah.11g051660 Amaranthus hybridus HOM05D004077 ORTHO05D004872 9.5e-110 400.6 213 87.8
EL10Ac5g10758 Beta vulgaris HOM05D004077 ORTHO05D004872 8.9e-108 394.0 258 74.0
BcaB01g00856 Brassica carinata HOM05D004077 ORTHO05D004872 2.6e-107 392.5 250 73.6
Mapoly0061s0121 Marchantia polymorpha HOM05D004077 ORTHO05D004872 1.7e-106 389.8 252 71.4
Oeu024688.1 Olea europaea HOM05D004077 ORTHO05D004872 2.7e-104 382.5 278 69.1
SMO367G0977 Selaginella moellendorffii HOM05D004077 ORTHO05D004872 3.9e-103 378.6 259 70.7
FAN08G3443 Fragaria x ananassa HOM05D006935 ORTHO05D004872 8.6e-103 377.5 246 75.6
ClCG06G016940 Citrullus lanatus HOM05D004077 ORTHO05D004872 9.5e-102 374.0 219 81.7
AT3G47990 Arabidopsis thaliana HOM05D004077 ORTHO05D004872 9.9e-99 364.0 200 82.5
FAN18G4193 Fragaria x ananassa HOM05D006935 ORTHO05D004872 6.4e-98 361.3 246 73.2
HanXRQChr04g0101541 Helianthus annuus HOM05D004077 ORTHO05D004872 1.2e-96 357.1 238 69.7
AagrBONN_evm.TU.Sc2ySwM_117.106 Anthoceros agrestis HOM05D004077 ORTHO05D004872 8.7e-95 350.9 254 65.4
Thhalv10010583m.g Eutrema salsugineum HOM05D004077 ORTHO05D004872 9.0e-92 340.9 187 81.8
HanXRQChr10g0295751 Helianthus annuus HOM05D004077 ORTHO05D004872 4.4e-91 338.6 257 59.9
FAN04G2667 Fragaria x ananassa HOM05D006935 ORTHO05D008944 2.2e-82 309.7 251 65.7
Pp3c5_22880 Physcomitrium patens HOM05D004077 ORTHO05D004872 2.1e-80 303.1 257 55.3
Lsat_1_v5_gn_1_26880 Lactuca sativa HOM05D004077 ORTHO05D004872 2.5e-78 296.2 233 60.1
MELO3C002259.2 Cucumis melo HOM05D006935 ORTHO05D008944 6.9e-68 261.5 155 77.4
Lsat_1_v5_gn_5_17220 Lactuca sativa HOM05D004077 ORTHO05D004872 1.9e-65 253.4 273 50.9
Phvul.009G179400 Phaseolus vulgaris HOM05D004077 ORTHO05D004872 1.1e-57 227.6 200 53.0
BcaB03g13800 Brassica carinata HOM05D004077 ORTHO05D004872 3.8e-50 202.6 189 55.6
Zm00001eb342000 Zea mays HOM05D004077 ORTHO05D004872 5.7e-46 188.7 102 83.3
Sabra12G0056900 Salix brachista HOM05D004077 ORTHO05D004872 2.9e-42 176.4 88 93.2
MBI19_g25009_MAGBIO Magnolia biondii HOM05D002438 ORTHO05D002617 1.4e-41 174.1 88 90.9
Zm00001eb341990 Zea mays HOM05D004077 ORTHO05D004872 8.2e-37 158.3 84 91.7
BcaB08g36240 Brassica carinata HOM05D004077 ORTHO05D004872 2.1e-32 143.7 90 72.2
Nitab4.5_0000058g0220 Nicotiana tabacum HOM05D004077 ORTHO05D004872 4.8e-29 132.5 116 56.9
Thhalv10010884m.g Eutrema salsugineum HOM05D004077 ORTHO05D004872 1.4e-28 131.0 70 85.7
CBR_g41084 Chara braunii HOM05D004077 ORTHO05D004872 2.7e-27 126.7 260 33.8
BcaC01g04154 Brassica carinata HOM05D004077 ORTHO05D004872 4.5e-27 125.9 70 84.3
Zm00001eb346530 Zea mays HOM05D004077 ORTHO05D004872 2.5e-25 120.2 61 82.0
TPR.G22006 Trifolium pratense HOM05D004077 ORTHO05D004872 3.0e-23 113.2 61 86.9
Psat5g110480 Pisum sativum HOM05D004077 ORTHO05D004872 3.1e-20 103.2 62 77.4
RcHm_v2.0_Chr5g0042751 Rosa chinensis HOM05D004077 ORTHO05D004872 2.7e-19 100.1 49 87.8
Lsat_1_v5_gn_3_127121 Lactuca sativa HOM05D004077 ORTHO05D004872 1.4e-15 87.8 99 50.5
SEGI_24612 Sequoiadendron giganteum HOM05D004077 ORTHO05D004872 7.8e-11 72.0 43 74.4
Sed0027524 Sechium edule HOM05D004077 ORTHO05D004872 1.7e-10 70.9 45 68.9
Rhsim03G0021500 Rhododendron simsii HOM05D004077 ORTHO05D004872 1.2e-08 64.7 36 83.3
Rhsim03G0021700 Rhododendron simsii HOM05D004077 ORTHO05D004872 3.6e-08 63.2 34 82.4
CSS0046000 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D004872 6.1e-08 62.4 40 80.0
Oeu016370.1 Olea europaea HOM05D003280 ORTHO05D287199 2.0e-06 57.4 38 76.3
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 4.4e-06 56.2 37 62.2
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 9.8e-06 55.1 37 62.2


User provided reference genes

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