Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22751 Nelumbo nucifera HOM05D006872 ORTHO05D006261 2.7e-89 332.0 176 100.0
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 1.9e-42 176.4 104 88.5
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 1.7e-30 136.7 97 75.3
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 2.6e-23 112.8 108 60.2
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 4.4e-23 112.1 102 63.7
PSO384G3916 Papaver somniferum HOM05D006872 ORTHO05D006261 8.1e-17 91.3 111 54.1
PSO339G3041 Papaver somniferum HOM05D006872 ORTHO05D006261 2.6e-15 86.3 111 51.4
COL.COLO4_29613 Corchorus olitorius HOM05D006872 ORTHO05D006261 2.9e-14 82.8 106 51.9
Nn3g21654 Nelumbo nucifera HOM05D006872 ORTHO05D006261 1.1e-13 80.9 47 87.2
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 1.4e-13 80.5 104 48.1
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 5.4e-13 78.6 119 48.7
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 5.4e-13 78.6 101 51.5
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 9.3e-13 77.8 105 49.5
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 1.2e-12 77.4 108 49.1
Cpa.g.sc104.60 Carica papaya HOM05D006872 ORTHO05D006261 1.6e-12 77.0 105 52.4
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 2.1e-12 76.6 105 49.5
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 2.7e-12 76.3 98 52.0
Gohir.A01G202400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 3.5e-12 75.9 104 47.1
Atru.chr8.1395 Acer truncatum HOM05D006872 ORTHO05D006261 1.0e-11 74.3 104 50.0
Duzib106G0826 Durio zibethinus HOM05D006872 ORTHO05D006261 1.0e-11 74.3 110 43.6
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 1.3e-11 73.9 115 45.2
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 1.3e-11 73.9 106 44.3
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 2.3e-11 73.2 101 48.5
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 3.0e-11 72.8 108 48.1
MBI17_g00990_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 3.9e-11 72.4 105 47.6
Potri.006G205200 Populus trichocarpa HOM05D006872 ORTHO05D006261 3.9e-11 72.4 106 50.9
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 5.1e-11 72.0 115 44.3
TAR376G1232 Trochodendron aralioides HOM05D007970 ORTHO05D009943 6.7e-11 71.6 98 49.0
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 8.7e-11 71.2 121 44.6
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 8.7e-11 71.2 102 49.0
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 1.5e-10 70.5 101 48.5
TWI77G0288 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 1.5e-10 70.5 109 45.0
Ciclev10013044m.g Citrus clementina HOM05D006872 ORTHO05D006261 1.9e-10 70.1 102 47.1
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 2.5e-10 69.7 118 43.2
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 2.5e-10 69.7 118 43.2
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 2.5e-10 69.7 54 59.3
MD14G1036000 Malus domestica HOM05D006872 ORTHO05D006261 3.3e-10 69.3 111 43.2
Nn1g08119 Nelumbo nucifera HOM05D006872 ORTHO05D006261 3.3e-10 69.3 58 65.5
Sed0014477 Sechium edule HOM05D006872 ORTHO05D006261 4.3e-10 68.9 108 39.8
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 4.3e-10 68.9 105 46.7
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 4.3e-10 68.9 105 46.7
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 5.6e-10 68.6 100 47.0
MBI01_g17601_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 7.4e-10 68.2 95 46.3
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 9.6e-10 67.8 98 43.9
Gorai.002G236200 Gossypium raimondii HOM05D006872 ORTHO05D006261 2.1e-09 66.6 104 43.3
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 2.1e-09 66.6 105 45.7
Ah.08g210170 Amaranthus hybridus HOM05D006872 ORTHO05D006261 2.8e-09 66.2 117 39.3
ClCG10G018510 Citrullus lanatus HOM05D006872 ORTHO05D006261 3.7e-09 65.9 113 43.4
CsaV3_3G037750 Cucumis sativus L. HOM05D006872 ORTHO05D006261 3.7e-09 65.9 113 43.4
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 3.7e-09 65.9 105 45.7
MELO3C009518.2 Cucumis melo HOM05D006872 ORTHO05D006261 4.8e-09 65.5 115 43.5
Manes.08G031500 Manihot esculenta HOM05D006872 ORTHO05D006261 4.8e-09 65.5 103 47.6
TWI31G1200 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 4.8e-09 65.5 66 51.5
CiPaw.10G015400 Carya illinoinensis HOM05D006872 ORTHO05D006261 6.2e-09 65.1 133 40.6
Psat3g030200 Pisum sativum HOM05D006872 ORTHO05D006261 1.1e-08 64.3 100 44.0
Glyma.03G200500 Glycine max HOM05D006872 ORTHO05D006261 1.4e-08 63.9 97 46.4
Lsat_1_v5_gn_6_35120 Lactuca sativa HOM05D006872 ORTHO05D006261 1.4e-08 63.9 58 56.9
MD12G1037000 Malus domestica HOM05D006872 ORTHO05D006261 1.4e-08 63.9 138 41.3
Sabra16G0075400 Salix brachista HOM05D006872 ORTHO05D006261 1.4e-08 63.9 105 44.8
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 1.8e-08 63.5 102 48.0
Sed0018559 Sechium edule HOM05D006872 ORTHO05D006261 2.4e-08 63.2 58 56.9
THA.LOC104816611 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 3.1e-08 62.8 102 43.1
MELO3C024577.2 Cucumis melo HOM05D006872 ORTHO05D006261 4.0e-08 62.4 102 40.2
ECA233G2821 Erigeron canadensis HOM05D001423 ORTHO05D001412 1.2e-07 60.8 63 55.6
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 1.2e-07 60.8 61 52.5
CDE02G4309 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 1.5e-07 60.5 51 58.8
HanXRQChr13g0398221 Helianthus annuus HOM05D006872 ORTHO05D006261 1.5e-07 60.5 58 53.4
EL10Ac7g16814 Beta vulgaris HOM05D006872 ORTHO05D006261 2.0e-07 60.1 65 49.2
TWI75G1150 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 2.0e-07 60.1 57 52.6
COL.COLO4_36729 Corchorus olitorius HOM05D007970 ORTHO05D009943 2.6e-07 59.7 82 48.8
FAN27G0083 Fragaria x ananassa HOM05D007970 ORTHO05D009943 2.6e-07 59.7 57 56.1
Atru.chr5.3444 Acer truncatum HOM05D007970 ORTHO05D009943 3.4e-07 59.3 70 50.0
PGR004G0970 Punica granatum HOM05D006872 ORTHO05D006261 3.4e-07 59.3 110 38.2
SalBow5G3820 Salvia bowleyana HOM05D006872 ORTHO05D006261 4.5e-07 58.9 106 38.7
TPR.G23353 Trifolium pratense HOM05D006872 ORTHO05D006261 4.5e-07 58.9 101 44.6
BcaB01g05730 Brassica carinata HOM05D010494 ORTHO05D006261 5.8e-07 58.5 104 37.5
FvH4_2g15690 Fragaria vesca HOM05D007970 ORTHO05D009943 5.8e-07 58.5 57 56.1
FAN15G0059 Fragaria x ananassa HOM05D007970 ORTHO05D009943 5.8e-07 58.5 57 56.1
FAN20G1196 Fragaria x ananassa HOM05D007970 ORTHO05D009943 5.8e-07 58.5 57 56.1
FAN24G2575 Fragaria x ananassa HOM05D007970 ORTHO05D009943 5.8e-07 58.5 57 56.1
Nitab4.5_0000020g0340 Nicotiana tabacum HOM05D006872 ORTHO05D006261 5.8e-07 58.5 61 50.8
Prupe.8G169400 Prunus persica HOM05D007970 ORTHO05D009943 7.6e-07 58.2 67 47.8
QL07p037475 Quercus lobata HOM05D006872 ORTHO05D006261 7.6e-07 58.2 80 47.5
AUR62037038 Chenopodium quinoa HOM05D006872 ORTHO05D006261 9.9e-07 57.8 117 35.0
Thhalv10014914m.g Eutrema salsugineum HOM05D010494 ORTHO05D006261 9.9e-07 57.8 111 38.7
Thecc.02G055100 Theobroma cacao HOM05D007970 ORTHO05D009943 9.9e-07 57.8 83 47.0
unitig_578.g16361 Utricularia gibba HOM05D006872 ORTHO05D006261 9.9e-07 57.8 103 40.8
FAN09G3456 Fragaria x ananassa HOM05D006872 ORTHO05D006261 1.7e-06 57.0 118 38.1
Lj1g0011262 Lotus japonicus HOM05D006872 ORTHO05D006261 1.7e-06 57.0 97 43.3
Ca_09043_v3 Cicer arietinum L. HOM05D006872 ORTHO05D006261 2.2e-06 56.6 100 42.0
ATR0772G099 Amborella trichopoda HOM05D006872 ORTHO05D006261 2.9e-06 56.2 113 39.8
AUR62006268 Chenopodium quinoa HOM05D006872 ORTHO05D006261 2.9e-06 56.2 71 46.5
Lsat_1_v5_gn_5_87380 Lactuca sativa HOM05D006872 ORTHO05D006261 2.9e-06 56.2 58 51.7
MD10G1128300 Malus domestica HOM05D007970 ORTHO05D009943 2.9e-06 56.2 57 49.1
Cfa005290 Carpinus fangiana HOM05D007970 ORTHO05D009943 3.8e-06 55.8 68 50.0
Oeu009304.1 Olea europaea HOM05D006872 ORTHO05D006261 3.8e-06 55.8 59 47.5
Solyc01g111820.2 Solanum lycopersicum HOM05D007970 ORTHO05D009943 3.8e-06 55.8 56 50.0
PGSC0003DMG400018628 Solanum tuberosum HOM05D007970 ORTHO05D009943 4.9e-06 55.5 56 46.4
Haze_02097 Corylus avellana HOM05D007970 ORTHO05D009943 6.4e-06 55.1 68 50.0
Dinv41914 Davidia involucrata HOM05D007970 ORTHO05D009943 6.4e-06 55.1 58 48.3
Actinidia14361 Actinidia chinensis HOM05D007970 ORTHO05D009943 8.4e-06 54.7 56 46.4
Actinidia21480 Actinidia chinensis HOM05D007970 ORTHO05D009943 8.4e-06 54.7 85 38.8
CsaV3_6G040990 Cucumis sativus L. HOM05D006872 ORTHO05D006261 8.4e-06 54.7 63 49.2
Manes.04G070700 Manihot esculenta HOM05D007970 ORTHO05D009943 8.4e-06 54.7 73 49.3
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 8.4e-06 54.7 60 48.3
Sp6g36570 Schrenkiella parvula HOM05D010494 ORTHO05D006261 8.4e-06 54.7 113 39.8


User provided reference genes

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