Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.7e-191 671.8 331 100.0
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.7e-191 671.8 331 100.0
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.9e-156 555.4 336 82.7
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 4.2e-107 392.1 346 61.8
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 9.3e-107 391.0 344 61.0
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 4.6e-106 388.7 344 57.8
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 6.3e-103 378.3 345 58.0
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.1e-102 377.5 339 56.6
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.2e-100 369.8 343 55.1
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 3.2e-99 365.9 347 56.8
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 4.2e-99 365.5 345 54.2
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 6.7e-97 358.2 343 54.5
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 8.7e-97 357.8 345 56.5
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 4.3e-96 355.5 345 54.5
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 9.7e-96 354.4 346 53.5
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 1.3e-95 354.0 345 55.4
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.6e-95 353.6 346 53.2
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 2.2e-95 353.2 346 53.2
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 4.1e-94 349.0 345 56.2
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 6.9e-94 348.2 345 53.3
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 3.4e-93 345.9 345 53.6
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 3.4e-93 345.9 352 53.1
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 7.7e-93 344.7 344 54.1
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 1.7e-92 343.6 343 55.1
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 2.5e-91 339.7 343 53.4
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 3.2e-91 339.3 346 53.5
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 7.2e-91 338.2 345 52.8
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 7.2e-91 338.2 345 51.9
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.2e-90 337.4 344 52.3
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.8e-89 333.6 343 52.5
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 1.3e-87 327.4 339 49.9
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 1.7e-87 327.0 337 52.2
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 2.2e-87 326.6 337 53.7
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 4.8e-87 325.5 340 51.5
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 6.3e-87 325.1 343 53.1
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 8.2e-87 324.7 343 51.6
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 8.2e-87 324.7 343 53.1
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 8.2e-87 324.7 344 52.9
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 1.4e-86 323.9 340 50.9
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 1.4e-86 323.9 346 53.2
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.8e-86 323.6 344 53.5
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 2.4e-86 323.2 345 52.8
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 2.4e-86 323.2 339 49.6
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 1.2e-85 320.9 341 49.0
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 2.0e-85 320.1 343 51.6
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 2.0e-85 320.1 339 49.6
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 4.5e-85 318.9 356 50.8
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 5.9e-85 318.5 342 50.3
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 1.3e-84 317.4 346 49.4
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.7e-84 317.0 345 48.7
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 1.7e-84 317.0 341 52.2
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 3.8e-84 315.8 345 48.7
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.9e-83 313.5 343 49.3
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.2e-82 310.8 330 50.3
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 2.7e-82 309.7 347 47.8
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 1.8e-81 307.0 341 49.3
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 2.3e-81 306.6 292 55.1
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.3e-81 306.6 345 47.5
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 3.0e-81 306.2 344 49.1
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 1.5e-80 303.9 344 50.3
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 2.0e-80 303.5 342 49.1
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 4.4e-80 302.4 329 48.6
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 7.4e-80 301.6 342 47.4
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 1.3e-79 300.8 343 46.6
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 2.8e-79 299.7 342 47.4
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 3.7e-79 299.3 341 48.1
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 8.2e-79 298.1 345 47.5
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 1.4e-78 297.4 341 47.2
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 2.4e-78 296.6 342 48.0
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 3.1e-78 296.2 342 47.4
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 5.3e-78 295.4 322 49.4
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 7.0e-78 295.0 323 48.3
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 2.6e-77 293.1 342 49.7
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 5.0e-76 288.9 348 45.7
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 6.5e-76 288.5 351 46.2
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.5e-75 287.3 307 48.5
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 2.5e-75 286.6 346 45.4
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 2.1e-74 283.5 348 45.4
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 2.1e-74 283.5 338 46.4
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 2.7e-74 283.1 348 45.1
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 3.6e-74 282.7 309 49.5
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 6.1e-74 282.0 344 45.3
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 8.0e-74 281.6 336 44.9
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 1.0e-73 281.2 349 44.7
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 2.3e-73 280.0 347 45.5
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 4.0e-73 279.3 345 45.5
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 4.0e-73 279.3 318 50.3
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 6.7e-73 278.5 339 45.7
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 1.5e-72 277.3 347 43.8
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 2.0e-72 276.9 318 50.0
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 2.6e-72 276.6 335 46.9
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 3.3e-72 276.2 307 47.6
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 1.3e-71 274.2 338 45.3
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 2.2e-71 273.5 344 44.2
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 2.2e-71 273.5 339 44.5
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 3.7e-71 272.7 341 45.5
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 4.8e-71 272.3 328 45.4
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 1.8e-70 270.4 341 44.3
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 1.8e-70 270.4 341 45.7
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 7.0e-70 268.5 341 45.2
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 9.1e-70 268.1 346 43.9
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 2.0e-69 266.9 337 42.4
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 4.5e-69 265.8 347 44.1
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 5.9e-69 265.4 259 54.4
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 1.0e-68 264.6 281 49.1
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 1.3e-68 264.2 338 41.4
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 1.7e-68 263.8 341 42.2
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 2.9e-68 263.1 334 43.4
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 1.1e-67 261.2 347 45.5
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 1.9e-67 260.4 338 44.1
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 3.2e-67 259.6 338 42.3
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 4.2e-67 259.2 342 43.3
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 7.2e-67 258.5 294 47.6
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.2e-66 257.7 335 43.9
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 3.0e-65 253.1 330 46.4
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 1.2e-64 251.1 343 42.0
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 1.5e-64 250.8 341 42.5
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 2.6e-64 250.0 322 45.3
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 3.4e-64 249.6 293 46.8
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 5.7e-64 248.8 342 43.0
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 4.8e-63 245.7 342 41.2
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 1.8e-62 243.8 337 43.3
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 1.2e-61 241.1 346 42.2
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 2.7e-61 240.0 346 41.9
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 2.7e-61 240.0 343 40.8
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 4.5e-61 239.2 274 46.0
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 1.1e-59 234.6 341 41.9
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 3.2e-59 233.0 341 39.3
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 6.1e-58 228.8 330 40.3
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 1.3e-55 221.1 328 39.3
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 2.2e-55 220.3 199 54.8
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 2.8e-55 219.9 279 41.9
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 8.3e-55 218.4 346 39.9
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 4.1e-54 216.1 330 39.1
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.6e-50 204.1 137 69.3
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 8.0e-50 201.8 332 37.0
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 3.4e-48 196.4 211 44.5
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 3.7e-47 193.0 137 66.4
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 8.3e-47 191.8 129 69.0
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.6e-45 187.6 236 41.1
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 1.5e-43 181.0 309 38.5
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 6.0e-37 159.1 275 36.4
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 1.2e-34 151.4 340 33.5
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 1.7e-28 131.0 103 59.2
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 8.6e-28 128.6 157 42.0
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 4.6e-13 79.7 133 36.1
ATR1152G005 Amborella trichopoda HOM05D005107 ORTHO05D006200 1.3e-12 78.2 199 29.6
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 2.3e-12 77.4 272 26.5
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 5.3e-09 66.2 39 76.9


User provided reference genes

Program Settings