Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 2.2e-155 552.4 298 100.0
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 1.3e-102 377.1 290 72.1
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 1.2e-89 334.0 294 62.2
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 6.0e-89 331.6 294 61.6
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 1.6e-86 323.6 294 61.2
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 3.4e-84 315.8 332 53.9
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 5.9e-84 315.1 298 58.7
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 2.5e-82 309.7 293 60.4
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 5.5e-82 308.5 294 58.5
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 9.3e-82 307.8 314 55.4
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 1.6e-81 307.0 293 60.4
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 2.3e-80 303.1 298 57.0
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 8.7e-80 301.2 311 55.6
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 5.7e-79 298.5 310 55.5
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 1.6e-78 297.0 298 57.0
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 5.3e-77 292.0 252 60.7
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 6.9e-77 291.6 286 58.0
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 3.4e-76 289.3 292 54.1
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 4.5e-76 288.9 298 55.0
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 4.5e-76 288.9 310 54.8
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 5.9e-76 288.5 316 54.1
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 1.7e-75 287.0 298 54.7
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 2.9e-75 286.2 293 55.6
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 5.0e-75 285.4 296 54.1
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 8.5e-75 284.6 298 54.4
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.4e-74 283.9 293 56.3
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 3.2e-74 282.7 282 59.9
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 9.4e-74 281.2 281 56.9
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 1.2e-73 280.8 293 57.3
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 1.6e-73 280.4 283 55.8
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.6e-73 280.4 297 55.2
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 1.6e-73 280.4 283 54.8
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 1.6e-73 280.4 282 56.7
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 2.7e-73 279.6 281 54.8
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 1.0e-72 277.7 293 56.7
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 2.3e-72 276.6 289 54.0
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 8.8e-72 274.6 269 58.0
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 1.1e-71 274.2 297 54.9
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.1e-71 274.2 265 57.0
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 2.6e-71 273.1 294 53.7
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 4.3e-71 272.3 292 53.4
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 5.7e-71 271.9 290 53.1
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 1.3e-70 270.8 282 54.3
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 2.2e-70 270.0 280 55.4
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 3.7e-70 269.2 294 54.4
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 4.8e-70 268.9 297 52.9
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 8.2e-70 268.1 292 55.1
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 1.4e-69 267.3 293 52.6
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 4.1e-69 265.8 292 52.4
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 2.6e-68 263.1 293 52.2
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 2.6e-68 263.1 267 58.8
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 3.4e-68 262.7 292 52.1
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 4.5e-68 262.3 280 54.3
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 3.8e-67 259.2 287 52.6
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 3.8e-67 259.2 313 49.2
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 1.1e-66 257.7 296 49.0
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 4.2e-66 255.8 292 50.7
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 7.2e-66 255.0 234 56.8
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 9.4e-66 254.6 286 51.7
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 1.6e-65 253.8 292 52.1
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 6.1e-65 251.9 289 52.9
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 1.0e-64 251.1 267 53.9
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 1.0e-64 251.1 346 44.5
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 2.3e-64 250.0 292 48.6
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 2.3e-64 250.0 290 50.0
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 2.0e-63 246.9 286 51.0
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 2.0e-63 246.9 287 51.2
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 5.7e-63 245.4 286 49.7
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 7.4e-63 245.0 279 49.5
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 1.3e-62 244.2 290 50.7
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 1.7e-62 243.8 292 50.3
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 2.2e-62 243.4 287 49.5
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 2.8e-62 243.0 307 47.9
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 2.8e-62 243.0 269 52.4
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 4.8e-62 242.3 285 48.8
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.1e-61 241.1 262 50.4
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 1.4e-61 240.7 279 48.7
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 2.4e-61 240.0 294 48.0
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 2.4e-61 240.0 311 47.3
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 5.3e-61 238.8 283 49.1
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 7.0e-61 238.4 258 51.9
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 7.0e-61 238.4 292 48.6
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 7.0e-61 238.4 283 48.8
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 1.2e-60 237.7 281 50.5
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 5.9e-60 235.3 238 51.7
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 7.7e-60 235.0 280 50.7
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 2.2e-59 233.4 282 48.6
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 2.2e-59 233.4 283 47.7
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 2.9e-59 233.0 285 48.4
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 2.9e-59 233.0 282 49.3
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 1.5e-58 230.7 259 47.9
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 3.2e-58 229.6 191 64.9
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 7.2e-58 228.4 296 47.0
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 8.0e-57 224.9 290 47.6
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 5.2e-56 222.2 288 46.5
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 8.8e-56 221.5 286 45.8
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 2.0e-55 220.3 292 46.9
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 2.0e-55 220.3 275 48.7
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 2.6e-55 219.9 239 55.6
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 3.3e-55 219.5 281 46.3
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 5.7e-55 218.8 208 56.7
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 5.7e-55 218.8 286 46.5
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 5.7e-55 218.8 261 47.5
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 5.7e-55 218.8 297 48.5
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 7.5e-55 218.4 264 45.5
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 1.3e-54 217.6 260 45.4
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 1.3e-54 217.6 260 45.4
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 2.2e-54 216.9 260 45.4
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 3.7e-54 216.1 267 45.3
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 4.8e-54 215.7 265 45.7
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 8.2e-54 214.9 281 46.6
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 1.4e-53 214.2 298 44.0
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 4.1e-53 212.6 260 45.8
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 3.5e-52 209.5 264 44.7
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 4.5e-52 209.1 261 44.8
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 5.9e-52 208.8 261 44.4
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 1.5e-50 204.1 280 46.1
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 5.5e-50 202.2 277 45.8
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.4e-48 197.6 310 42.3
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 1.8e-48 197.2 271 43.2
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 8.3e-46 188.3 206 53.9
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 1.8e-45 187.2 218 51.8
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 3.1e-45 186.4 218 51.8
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 1.5e-42 177.6 273 41.4
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 8.0e-41 171.8 234 45.3
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 8.8e-40 168.3 270 40.4
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 1.3e-38 164.5 172 52.9
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 1.4e-37 161.0 258 41.5
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 4.5e-36 156.0 281 36.7
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 7.7e-36 155.2 229 41.5
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 5.6e-34 149.1 135 54.1
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 4.7e-33 146.0 200 46.0
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 5.2e-32 142.5 245 36.7
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 1.5e-31 141.0 265 35.5
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 3.2e-29 133.3 301 33.6
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 2.3e-27 127.1 180 48.3
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 5.0e-27 125.9 152 40.8
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 6.4e-22 109.0 186 37.6
arahy.Tifrunner.gnm1.ann1.H09BLY Arachis hypogaea HOM05D004617 ORTHO05D005531 8.3e-22 108.6 129 47.3
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 3.2e-21 106.7 135 40.7
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 1.7e-19 100.9 248 31.0
Zm00001eb355840 Zea mays HOM05D004617 ORTHO05D005531 3.9e-19 99.8 186 33.3
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 1.1e-18 98.2 237 31.2
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 3.1e-16 90.1 197 32.0
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 2.0e-15 87.4 98 53.1
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 2.1e-12 77.4 208 29.3
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 3.5e-12 76.6 70 54.3
Pp3c8_1270 Physcomitrium patens HOM05D004617 ORTHO05D005531 1.3e-11 74.7 136 30.1
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 3.9e-11 73.2 88 43.2
Pp3c3_37370 Physcomitrium patens HOM05D004617 ORTHO05D005531 1.9e-10 70.9 213 27.2
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 2.8e-09 67.0 214 28.0
arahy.Tifrunner.gnm1.ann1.8UC028 Arachis hypogaea HOM05D004617 ORTHO05D005531 4.7e-09 66.2 109 39.4


User provided reference genes

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