Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 8.9e-150 533.9 332 100.0
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.1e-83 314.3 248 66.5
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.4e-81 307.4 249 65.9
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 2.8e-79 299.7 245 63.3
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.3e-79 298.5 255 63.1
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 1.7e-76 290.4 251 58.6
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 8.5e-76 288.1 245 63.3
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 5.5e-75 285.4 216 68.5
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 2.7e-74 283.1 242 63.2
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 4.7e-74 282.3 177 75.7
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 3.0e-73 279.6 245 59.6
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 3.0e-73 279.6 245 59.6
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 5.2e-73 278.9 191 73.3
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 5.2e-73 278.9 245 60.0
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.2e-72 277.7 165 79.4
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 1.5e-72 277.3 177 75.1
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 3.4e-72 276.2 183 73.8
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 4.4e-72 275.8 185 73.0
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 4.4e-72 275.8 245 61.2
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 1.3e-71 274.2 170 77.6
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.3e-71 274.2 247 59.1
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 2.2e-71 273.5 247 58.7
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 2.2e-71 273.5 247 58.7
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 2.2e-71 273.5 201 69.2
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 2.2e-71 273.5 162 80.2
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 3.7e-71 272.7 179 73.7
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.7e-71 272.7 244 60.2
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.7e-71 272.7 244 60.2
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 4.8e-71 272.3 244 59.8
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 4.8e-71 272.3 245 58.8
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 1.1e-70 271.2 245 59.2
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 1.4e-70 270.8 162 79.6
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 2.4e-70 270.0 161 79.5
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 3.1e-70 269.6 247 57.1
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 4.1e-70 269.2 246 56.5
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 1.2e-69 267.7 185 74.1
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 1.6e-69 267.3 170 75.3
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 1.6e-69 267.3 246 58.5
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 2.7e-69 266.5 186 71.0
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 3.5e-69 266.2 246 56.9
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 1.0e-68 264.6 174 72.4
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 1.3e-68 264.2 185 72.4
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 1.7e-68 263.8 254 56.7
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 1.7e-68 263.8 248 57.3
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.7e-68 263.8 162 75.9
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 2.9e-68 263.1 245 55.5
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 2.9e-68 263.1 170 72.4
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 2.9e-68 263.1 246 55.7
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 3.8e-68 262.7 245 55.1
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 3.8e-68 262.7 244 57.0
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 5.0e-68 262.3 164 75.0
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 6.5e-68 261.9 252 56.3
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 1.1e-67 261.2 168 72.6
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 1.1e-67 261.2 245 55.9
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 1.5e-67 260.8 170 72.4
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.9e-67 260.4 245 55.1
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 1.9e-67 260.4 162 74.7
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 2.5e-67 260.0 246 54.9
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 2.5e-67 260.0 195 64.6
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 3.3e-67 259.6 213 62.4
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 3.3e-67 259.6 247 56.3
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 4.2e-67 259.2 184 70.7
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 1.2e-66 257.7 247 54.7
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.2e-66 257.7 184 71.7
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.2e-66 257.7 184 71.7
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 1.6e-66 257.3 226 62.4
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 2.1e-66 256.9 247 55.5
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 2.8e-66 256.5 160 76.2
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 3.6e-66 256.1 172 70.3
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 8.0e-66 255.0 210 61.9
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 1.8e-65 253.8 246 53.3
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 4.0e-65 252.7 265 72.5
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 8.9e-65 251.5 176 68.8
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 1.2e-64 251.1 254 53.1
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 4.4e-64 249.2 264 70.5
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 5.7e-64 248.8 186 67.2
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 1.7e-63 247.3 171 67.8
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 2.2e-63 246.9 178 68.5
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 3.7e-63 246.1 172 67.4
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 2.4e-62 243.4 160 73.1
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 4.1e-62 242.7 264 69.7
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 5.4e-62 242.3 160 71.9
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 3.5e-61 239.6 248 52.4
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 4.5e-61 239.2 206 58.7
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 4.5e-61 239.2 186 65.6
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 4.5e-61 239.2 196 63.3
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 1.3e-60 237.7 160 71.9
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 1.3e-60 237.7 249 51.4
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 1.4e-57 227.6 163 68.1
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 4.0e-57 226.1 246 50.0
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 4.0e-57 226.1 160 69.4
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 1.7e-55 220.7 248 51.2
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 2.2e-55 220.3 162 63.6
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 1.4e-54 217.6 171 64.9
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 5.4e-54 215.7 193 56.5
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 1.0e-52 211.5 199 56.8
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 1.0e-52 211.5 170 61.8
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 1.3e-52 211.1 170 60.6
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 1.9e-51 207.2 186 55.4
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 9.5e-51 204.9 161 63.4
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.8e-49 200.7 176 55.1
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.0e-48 197.2 244 46.3
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 2.0e-48 197.2 196 55.6
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 2.6e-48 196.8 176 54.5
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 3.4e-48 196.4 195 53.3
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 5.8e-48 195.7 171 59.6
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 1.1e-46 191.4 158 60.8
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 2.1e-45 187.2 114 74.6
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 2.7e-45 186.8 147 63.9
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 1.3e-44 184.5 198 50.0
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.1e-43 181.4 203 48.8
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 2.8e-42 176.8 275 40.7
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.8e-41 174.1 136 61.8
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 4.0e-41 172.9 176 52.8
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 6.8e-41 172.2 123 69.1
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 6.4e-39 165.6 192 46.4
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 1.1e-38 164.9 162 52.5
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 1.5e-32 144.4 139 51.1
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.6e-29 134.4 186 42.5
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 8.7e-28 128.6 100 60.0
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.1e-27 128.3 186 41.4
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 9.6e-27 125.2 170 40.0
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.8e-26 123.6 179 41.3
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 4.0e-25 119.8 71 78.9
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 6.4e-23 112.5 82 63.4
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 1.9e-22 110.9 118 51.7
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 7.1e-22 109.0 71 71.8
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.0e-20 103.6 81 66.7
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 1.5e-19 101.3 115 45.2
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 9.6e-19 98.6 84 58.3
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.0e-13 79.3 41 87.8
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 2.3e-12 77.4 39 87.2
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.3e-12 77.4 39 87.2
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.0e-12 77.0 38 89.5
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.1e-09 68.6 40 77.5
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 4.5e-08 63.2 38 71.1
FAN04G3213 Fragaria x ananassa HOM05D036052 ORTHO05D006215 9.9e-08 62.0 47 61.7
FAN09G1413 Fragaria x ananassa HOM05D036052 ORTHO05D006215 1.7e-07 61.2 44 63.6
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 6.4e-07 59.3 56 57.1
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 1.1e-06 58.5 38 65.8


User provided reference genes

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