Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22628 Nelumbo nucifera HOM05D006540 ORTHO05D008202 2.4e-113 412.1 200 100.0
Cfa009208 Carpinus fangiana HOM05D006540 ORTHO05D008202 9.3e-94 347.1 193 88.1
CiPaw.05G182700 Carya illinoinensis HOM05D006540 ORTHO05D008202 6.0e-93 344.4 193 87.6
Thecc.02G259400 Theobroma cacao HOM05D006540 ORTHO05D008202 8.7e-92 340.5 193 88.1
Cpa.g.sc33.16 Carica papaya HOM05D006540 ORTHO05D008202 9.7e-91 337.0 193 85.5
Gorai.002G186600 Gossypium raimondii HOM05D006540 ORTHO05D008202 1.3e-90 336.7 193 85.5
CSS0000303 Camellia sinensis var. sinensis HOM05D006540 ORTHO05D008202 2.1e-90 335.9 193 85.0
ClCG05G025710 Citrullus lanatus HOM05D006540 ORTHO05D008202 6.3e-90 334.3 193 84.5
Cc11_g15700 Coffea canephora HOM05D006540 ORTHO05D008202 8.2e-90 334.0 193 82.9
Dinv24788 Davidia involucrata HOM05D006540 ORTHO05D008202 8.2e-90 334.0 182 88.5
Gohir.A01G159600 Gossypium hirsutum HOM05D006540 ORTHO05D008202 8.2e-90 334.0 193 84.5
Oeu059907.1 Olea europaea HOM05D006540 ORTHO05D008202 1.1e-89 333.6 190 85.8
GSVIVG01004073001 Vitis vinifera HOM05D006540 ORTHO05D008202 1.1e-89 333.6 190 82.1
Gohir.D01G150500 Gossypium hirsutum HOM05D006540 ORTHO05D008202 1.4e-89 333.2 193 85.0
Eucgr.B03288 Eucalyptus grandis HOM05D006540 ORTHO05D008202 2.4e-89 332.4 193 83.4
vmacro16198 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 2.4e-89 332.4 193 82.9
PGR102G2745 Punica granatum HOM05D006540 ORTHO05D008202 4.1e-89 331.6 193 83.9
Ciclev10032003m.g Citrus clementina HOM05D006540 ORTHO05D008202 6.9e-89 330.9 193 85.0
TWI18G0987 Tripterygium wilfordii HOM05D006540 ORTHO05D008202 6.9e-89 330.9 188 84.6
Prupe.1G243900 Prunus persica HOM05D006540 ORTHO05D008202 1.2e-88 330.1 189 84.7
PGSC0003DMG400018605 Solanum tuberosum HOM05D006540 ORTHO05D008202 2.0e-88 329.3 193 81.3
Nitab4.5_0000007g0060 Nicotiana tabacum HOM05D006540 ORTHO05D008202 2.6e-88 328.9 193 81.9
Atru.chr11.2104 Acer truncatum HOM05D006540 ORTHO05D008202 5.9e-88 327.8 193 83.4
SalBow2G2200 Salvia bowleyana HOM05D006540 ORTHO05D008202 5.9e-88 327.8 193 82.9
TAR622G1382 Trochodendron aralioides HOM05D006540 ORTHO05D008202 5.9e-88 327.8 178 88.2
Rhsim12G0110600 Rhododendron simsii HOM05D006540 ORTHO05D008202 7.6e-88 327.4 193 81.9
Migut.K00595 Erythranthe guttata HOM05D006540 ORTHO05D008202 1.3e-87 326.6 193 82.4
Manes.13G024900 Manihot esculenta HOM05D006540 ORTHO05D008202 1.3e-87 326.6 190 84.7
Nitab4.5_0003628g0010 Nicotiana tabacum HOM05D006540 ORTHO05D008202 1.3e-87 326.6 191 82.2
MSTRG.568 Avicennia marina HOM05D006540 ORTHO05D008202 2.9e-87 325.5 194 82.0
MD13G1101900 Malus domestica HOM05D006540 ORTHO05D008202 2.9e-87 325.5 190 83.2
Peaxi162Scf00128g00138 Petunia axillaris HOM05D006540 ORTHO05D008202 6.5e-87 324.3 193 80.8
FAN07G1259 Fragaria x ananassa HOM05D006540 ORTHO05D008202 8.5e-87 323.9 187 82.4
ATR0686G190 Amborella trichopoda HOM05D006540 ORTHO05D008202 1.4e-86 323.2 193 80.8
CAN.G832.5 Capsicum annuum HOM05D006540 ORTHO05D008202 1.4e-86 323.2 193 79.8
arahy.Tifrunner.gnm1.ann1.NX3C69 Arachis hypogaea HOM05D006540 ORTHO05D008202 1.9e-86 322.8 193 81.9
COL.COLO4_24263 Corchorus olitorius HOM05D006540 ORTHO05D008202 2.5e-86 322.4 189 83.6
Potri.013G090000 Populus trichocarpa HOM05D006540 ORTHO05D008202 2.5e-86 322.4 193 80.3
RcHm_v2.0_Chr4g0432921 Rosa chinensis HOM05D006540 ORTHO05D008202 2.5e-86 322.4 183 83.6
Sopen05g008320 Solanum pennellii HOM05D006540 ORTHO05D008202 2.5e-86 322.4 188 80.9
Duzib268G1404 Durio zibethinus HOM05D006540 ORTHO05D008202 4.2e-86 321.6 193 81.9
arahy.Tifrunner.gnm1.ann1.LD9JWE Arachis hypogaea HOM05D006540 ORTHO05D008202 7.2e-86 320.9 193 81.3
Actinidia15092 Actinidia chinensis HOM05D006540 ORTHO05D008202 9.3e-86 320.5 193 81.3
CANSAT35G0572 Cannabis sativa HOM05D006540 ORTHO05D008202 1.2e-85 320.1 193 81.3
FAN17G1845 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.2e-85 320.1 182 83.5
Glyma.17G134500 Glycine max HOM05D006540 ORTHO05D008202 1.6e-85 319.7 193 81.3
Thhalv10004491m.g Eutrema salsugineum HOM05D006540 ORTHO05D008202 2.1e-85 319.3 193 81.9
MD16G1102400 Malus domestica HOM05D006540 ORTHO05D008202 2.1e-85 319.3 191 80.6
Sabra13G0070200 Salix brachista HOM05D006540 ORTHO05D008202 2.1e-85 319.3 194 79.9
vmacro01127 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 2.1e-85 319.3 193 78.2
CDE02G2769 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 2.7e-85 318.9 193 77.7
Sp2g15690 Schrenkiella parvula HOM05D006540 ORTHO05D008202 3.6e-85 318.5 193 82.4
FAN22G2305 Fragaria x ananassa HOM05D006540 ORTHO05D008202 4.6e-85 318.2 182 83.0
BcaC06g31063 Brassica carinata HOM05D006540 ORTHO05D008202 6.1e-85 317.8 193 81.9
BcaC06g33900 Brassica carinata HOM05D006540 ORTHO05D008202 6.1e-85 317.8 193 81.9
C07p35560 Brassica napus HOM05D006540 ORTHO05D008202 6.1e-85 317.8 193 81.9
BolC7t44080H Brassica oleracea HOM05D006540 ORTHO05D008202 6.1e-85 317.8 193 81.9
Actinidia37429 Actinidia chinensis HOM05D006540 ORTHO05D008202 7.9e-85 317.4 193 80.3
THA.LOC104825662 Tarenaya hassleriana HOM05D006540 ORTHO05D008202 1.0e-84 317.0 193 80.3
CDE09G1037 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 1.3e-84 316.6 193 77.2
FvH4_4g25530 Fragaria vesca HOM05D006540 ORTHO05D008202 1.3e-84 316.6 182 82.4
FAN12G0822 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.3e-84 316.6 182 82.4
A06p41910 Brassica napus HOM05D006540 ORTHO05D008202 1.8e-84 316.2 193 81.9
BraA06t27110Z Brassica rapa HOM05D006540 ORTHO05D008202 1.8e-84 316.2 193 81.9
Phvul.003G064400 Phaseolus vulgaris HOM05D006540 ORTHO05D008202 1.8e-84 316.2 193 80.8
Lalb_Chr05g0228421 Lupinus albus HOM05D006540 ORTHO05D008202 5.1e-84 314.7 185 82.2
Lj4g0023216 Lotus japonicus HOM05D006540 ORTHO05D008202 6.7e-84 314.3 193 79.8
Lj6A811T79 Lonicera japonica HOM05D006540 ORTHO05D008202 1.1e-83 313.5 190 82.1
AL5G15370 Arabidopsis lyrata HOM05D006540 ORTHO05D008202 1.5e-83 313.2 193 80.3
Aa31LG2G5960 Aethionema arabicum HOM05D006540 ORTHO05D008202 1.9e-83 312.8 193 79.8
AT3G26580 Arabidopsis thaliana HOM05D006540 ORTHO05D008202 2.5e-83 312.4 193 80.3
Hma1.2p1_0223F.1_g093990 Hydrangea macrophylla HOM05D006540 ORTHO05D008202 2.5e-83 312.4 218 72.9
Aqoxy3G01202 Aquilegia oxysepala HOM05D006540 ORTHO05D008202 3.3e-83 312.0 190 78.9
PSO017G4849 Papaver somniferum HOM05D006540 ORTHO05D008202 3.3e-83 312.0 193 78.8
Carub.0005s0457 Capsella rubella HOM05D006540 ORTHO05D008202 4.3e-83 311.6 193 79.8
DCAR_024432 Daucus carota HOM05D006540 ORTHO05D008202 7.4e-83 310.8 176 85.8
CARHR147570 Cardamine hirsuta HOM05D006540 ORTHO05D008202 9.7e-83 310.5 193 80.3
Ca_22583_v3 Cicer arietinum L. HOM05D006540 ORTHO05D008202 1.3e-82 310.1 193 80.3
Duzib248G0112 Durio zibethinus HOM05D006540 ORTHO05D008202 2.2e-82 309.3 193 80.3
Sc04g0009450 Simmondsia chinensis HOM05D006540 ORTHO05D008202 2.2e-82 309.3 182 81.9
QL03p058139 Quercus lobata HOM05D006540 ORTHO05D008202 3.7e-82 308.5 241 66.0
Haze_12245 Corylus avellana HOM05D006540 ORTHO05D008202 8.2e-82 307.4 198 78.8
MBI10_g13027_MAGBIO Magnolia biondii HOM05D006540 ORTHO05D008202 9.1e-81 303.9 213 72.8
ECA233G5619 Erigeron canadensis HOM05D006540 ORTHO05D008202 2.0e-80 302.8 190 78.4
HanXRQChr08g0208131 Helianthus annuus HOM05D006540 ORTHO05D008202 1.0e-79 300.4 190 76.3
AUR62005459 Chenopodium quinoa HOM05D006540 ORTHO05D008202 3.8e-79 298.5 190 76.8
AUR62024282 Chenopodium quinoa HOM05D006540 ORTHO05D008202 6.5e-79 297.7 193 76.7
Lsat_1_v5_gn_8_152220 Lactuca sativa HOM05D006540 ORTHO05D008202 5.5e-78 294.7 190 75.3
EL10Ac6g13801 Beta vulgaris HOM05D006540 ORTHO05D008202 7.2e-78 294.3 193 74.6
Medtr8g069450 Medicago truncatula HOM05D006540 ORTHO05D008202 3.9e-76 288.5 193 73.6
Ah.03g133040 Amaranthus hybridus HOM05D006540 ORTHO05D008202 9.7e-75 283.9 193 73.6
Psat4g116680 Pisum sativum HOM05D006540 ORTHO05D008202 2.2e-71 272.7 191 72.8
HPP92_002022 Vanilla planifolia HOM05D006540 ORTHO05D008202 1.1e-70 270.4 194 69.6
unitig_21.g20872 Utricularia gibba HOM05D006540 ORTHO05D008202 3.2e-70 268.9 195 68.7
Rhsim12G0041000 Rhododendron simsii HOM05D006540 ORTHO05D008202 9.4e-70 267.3 263 56.7
PSO478G4529 Papaver somniferum HOM05D006540 ORTHO05D008202 1.6e-69 266.5 170 78.2
TPR.G17765 Trifolium pratense HOM05D006540 ORTHO05D008202 1.2e-64 250.4 163 77.9
Zm00001eb096140 Zea mays HOM05D006540 ORTHO05D008202 7.7e-64 247.7 189 66.7
Os03g0428800 Oryza sativa ssp. japonica HOM05D006540 ORTHO05D008202 4.2e-62 241.9 195 62.6
BcaB01g00564 Brassica carinata HOM05D006540 ORTHO05D008202 2.0e-59 233.0 139 82.0
MELO3C011955.2 Cucumis melo HOM05D006540 ORTHO05D008202 2.0e-56 223.0 123 91.1
TAR374G0845 Trochodendron aralioides HOM05D006540 ORTHO05D008202 2.0e-56 223.0 123 91.1
CsaV3_5G031170 Cucumis sativus L. HOM05D006540 ORTHO05D008202 5.9e-56 221.5 123 90.2
VMungo0251G1250 Vigna mungo HOM05D006540 ORTHO05D008202 5.0e-55 218.4 125 88.0
SEGI_37038 Sequoiadendron giganteum HOM05D006540 ORTHO05D008202 1.6e-53 213.4 170 59.4
Sed0005489 Sechium edule HOM05D006540 ORTHO05D008202 2.1e-53 213.0 116 90.5
Mapoly0037s0067 Marchantia polymorpha HOM05D006540 ORTHO05D008202 2.7e-53 212.6 181 57.5
AagrBONN_evm.TU.Sc2ySwM_340.367 Anthoceros agrestis HOM05D006540 ORTHO05D008202 8.0e-53 211.1 188 54.8
SMO347G0417 Selaginella moellendorffii HOM05D006540 ORTHO05D008202 9.1e-49 197.6 179 54.7
Pp3c27_6670 Physcomitrium patens HOM05D006540 ORTHO05D008202 2.5e-46 189.5 188 48.4
BcaC06g33898 Brassica carinata HOM05D006540 ORTHO05D008202 3.7e-26 122.5 82 69.5
CBR_g8379 Chara braunii HOM05D006540 ORTHO05D008202 1.4e-20 104.0 137 41.6
Cre12.g528050 Chlamydomonas reinhardtii HOM05D006540 ORTHO05D008202 2.3e-20 103.2 117 44.4
PRCOL_00004949 Prasinoderma coloniale HOM05D006540 ORTHO05D008202 6.4e-18 95.1 191 32.5
Oeu029879.1 Olea europaea HOM05D006540 ORTHO05D008202 8.3e-18 94.7 71 62.0
MCO07G599 Micromonas commoda HOM05D006540 ORTHO05D008202 1.9e-17 93.6 166 36.1
RcHm_v2.0_Chr5g0067811 Rosa chinensis HOM05D006540 ORTHO05D008202 1.0e-15 87.8 49 83.7
QL04p066147 Quercus lobata HOM05D006540 ORTHO05D008202 3.1e-12 76.3 46 84.8
unitig_744.g24293 Utricularia gibba HOM05D006540 ORTHO05D008202 6.4e-10 68.6 44 65.9


User provided reference genes

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