Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 3749.9 1876 100.0
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2811.9 1858 74.9
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2547.7 1857 68.3
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2499.5 1854 66.7
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2479.5 1853 66.8
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2398.6 1861 63.9
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2392.1 1859 64.6
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2375.9 1861 63.6
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2360.5 1877 63.9
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2349.7 1851 64.4
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 2342.0 1856 63.2
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2338.9 1866 63.1
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2328.5 1855 62.4
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2318.1 1853 63.0
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2315.0 1936 61.8
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2314.7 1863 63.2
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2314.7 1858 63.1
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2278.8 1837 62.4
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2278.1 1855 61.7
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 2262.3 1858 61.1
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2255.3 1857 61.2
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2240.7 1868 61.1
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 2240.7 1864 60.4
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 2234.1 1837 61.0
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2234.1 1831 62.0
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2215.3 2052 56.7
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 2214.9 1837 60.6
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 2213.3 1831 60.7
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 2209.1 1839 60.1
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2196.8 1847 59.8
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 2194.1 1837 60.3
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 2189.5 1857 59.7
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2187.9 2050 56.1
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2186.0 1833 60.3
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2184.1 1839 59.7
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2174.8 1874 58.2
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 2159.0 1853 58.9
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2158.3 1867 58.2
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2156.3 1879 58.8
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 2155.9 1856 58.2
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 2153.6 1858 58.3
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 2144.0 2029 56.3
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 2126.3 1851 57.5
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2118.2 1823 60.2
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 2112.0 1852 59.5
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 2110.9 1859 57.2
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 2104.7 1857 57.2
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 2097.0 1855 57.6
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 2093.2 2153 51.6
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 2084.3 1862 57.1
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 2081.6 1838 58.2
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 2074.3 1855 58.0
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 2062.7 1859 56.9
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 2061.2 1847 56.6
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 2057.0 1880 55.9
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 2051.6 1703 60.4
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 2047.7 1846 56.5
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 2046.6 1846 56.8
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 2046.6 1849 56.6
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 2044.2 1856 56.3
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 2041.9 1849 56.3
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 2033.8 1865 55.7
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 2031.1 1604 64.2
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 2027.7 1853 56.1
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 2026.9 1855 55.8
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 2025.0 1876 55.4
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 2011.5 1877 55.1
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 2006.5 1884 54.7
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 2005.3 1835 55.2
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 1999.9 1846 56.1
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1988.0 1832 56.3
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1963.0 1840 55.0
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 1918.7 1867 53.5
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 1904.0 1868 54.2
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1889.4 1894 53.0
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1876.7 1836 53.0
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1859.0 1721 55.3
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1605.9 1190 67.4
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1556.6 1281 61.0
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1454.5 1271 58.3
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1454.5 1724 46.4
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1305.4 1938 39.5
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1292.3 1888 39.9
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1264.2 1059 61.1
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1204.5 1901 37.4
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1179.5 1006 59.4
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1150.6 1326 46.7
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1094.3 1173 50.6
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 2.8e-293 1013.1 1996 34.0
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 1.6e-272 944.1 776 61.7
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.2e-267 927.9 981 51.0
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 3.4e-262 909.8 1012 48.0
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 4.6e-251 872.8 959 49.2
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 4.4e-246 856.3 1127 44.5
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 7.6e-238 828.9 772 54.4
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 8.7e-218 762.3 669 57.0
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 1.2e-169 602.4 493 62.7
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 3.1e-167 594.3 560 56.2
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 9.2e-159 566.2 524 53.8
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 8.0e-155 553.1 522 58.0
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 3.1e-146 524.6 423 61.0
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 2.0e-145 521.9 393 66.9
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 1.5e-124 452.6 293 73.7
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 5.4e-119 434.1 544 46.3
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 7.6e-113 413.7 343 58.3
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 5.3e-106 391.0 323 57.9
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 2.1e-102 379.0 751 34.1
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 2.3e-101 375.6 383 52.7
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 9.3e-95 353.6 253 65.2
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 1.1e-92 346.7 216 78.2
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 1.0e-85 323.6 330 53.9
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 5.5e-79 301.2 227 64.8
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 6.7e-77 294.3 227 62.6
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 5.7e-68 264.6 374 42.8
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 5.3e-66 258.1 191 64.4
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 4.5e-65 255.0 191 62.8
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 3.8e-64 251.9 315 45.4
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 8.3e-51 207.6 293 41.3
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 1.3e-43 183.7 166 54.2
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 5.9e-41 174.9 392 29.1
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 5.2e-37 161.8 136 58.1
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 2.9e-35 156.0 183 45.4
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 1.5e-31 143.7 331 33.2
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 1.1e-29 137.5 141 53.9
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 9.9e-28 131.0 102 64.7
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 2.9e-27 129.4 94 64.9
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 8.3e-27 127.9 93 65.6
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 2.4e-26 126.3 145 49.0
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 4.1e-26 125.6 300 31.7
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 7.1e-26 124.8 125 49.6
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 1.2e-25 124.0 146 45.2
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 2.1e-25 123.2 132 50.0
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 4.7e-22 112.1 294 28.6
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 4.0e-21 109.0 99 54.5
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 1.2e-20 107.5 194 36.6
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 7.1e-18 98.2 212 33.5
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 9.2e-18 97.8 88 54.5
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 8.7e-16 91.3 116 44.0
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 1.5e-15 90.5 99 46.5
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 2.8e-14 86.3 96 52.1
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 1.8e-13 83.6 94 47.9
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 4.9e-11 75.5 74 50.0
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 4.9e-11 75.5 74 50.0
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 4.9e-11 75.5 98 41.8
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 8.4e-11 74.7 137 36.5
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.1e-10 74.3 74 48.6
Zm00001eb150600 Zea mays HOM05D004963 ORTHO05D006638 7.1e-10 71.6 59 55.9
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 7.8e-09 68.2 98 38.8
Actinidia27518 Actinidia chinensis HOM05D001993 ORTHO05D030912 6.6e-08 65.1 46 67.4
Psat7g026160 Pisum sativum HOM05D004963 ORTHO05D001824 2.5e-07 63.2 58 46.6
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 3.3e-07 62.8 48 58.3
Psat4g170200 Pisum sativum HOM05D003662 ORTHO05D001824 3.3e-07 62.8 56 48.2
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 7.3e-07 61.6 51 56.9


User provided reference genes

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