Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 2.4e-210 735.3 390 100.0
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 6.0e-113 411.8 244 79.9
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 7.9e-113 411.4 244 79.9
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 1.5e-111 407.1 232 81.9
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 4.8e-110 402.1 232 81.9
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 4.8e-110 402.1 241 79.7
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 3.1e-109 399.4 238 79.4
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 4.0e-109 399.1 259 74.5
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 6.9e-109 398.3 229 80.8
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 9.0e-109 397.9 229 79.9
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 5.8e-108 395.2 259 72.2
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 7.6e-108 394.8 267 71.5
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 7.6e-108 394.8 228 79.4
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 2.9e-107 392.9 229 80.3
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 3.8e-107 392.5 250 73.2
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 6.4e-107 391.7 221 82.4
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 8.4e-107 391.3 248 74.2
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 1.4e-106 390.6 262 73.3
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 1.9e-106 390.2 259 74.1
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 2.4e-106 389.8 226 81.4
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 4.2e-106 389.0 228 80.7
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 4.2e-106 389.0 228 80.7
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 5.5e-106 388.7 241 75.9
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 7.1e-106 388.3 228 81.1
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 9.3e-106 387.9 249 73.5
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.8e-104 383.6 241 75.1
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 3.0e-104 382.9 228 78.5
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 3.9e-104 382.5 229 75.5
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 3.9e-104 382.5 241 75.1
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 5.1e-104 382.1 231 76.6
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 5.1e-104 382.1 229 76.9
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 6.7e-104 381.7 228 79.4
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 6.7e-104 381.7 220 78.6
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 8.7e-104 381.3 250 74.0
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 8.7e-104 381.3 241 74.7
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 8.7e-104 381.3 244 74.6
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 1.1e-103 380.9 230 76.1
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 1.5e-103 380.6 231 76.2
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 2.5e-103 379.8 266 68.4
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 4.3e-103 379.0 241 73.9
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 4.3e-103 379.0 228 78.5
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 4.3e-103 379.0 251 73.7
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 7.4e-103 378.3 227 78.4
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 1.3e-102 377.5 230 76.1
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 1.3e-102 377.5 226 78.8
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 2.1e-102 376.7 253 71.1
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 2.1e-102 376.7 229 76.4
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 6.2e-102 375.2 253 70.0
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 6.2e-102 375.2 254 70.1
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 8.1e-102 374.8 255 71.0
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 1.1e-101 374.4 249 72.3
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 1.1e-101 374.4 250 73.2
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 1.1e-101 374.4 246 74.4
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 1.4e-101 374.0 220 77.3
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 3.1e-101 372.9 253 71.9
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 5.3e-101 372.1 250 70.0
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 1.5e-100 370.5 221 79.2
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 2.6e-100 369.8 255 70.6
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 2.6e-100 369.8 251 68.9
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 1.0e-99 367.9 242 73.1
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 1.0e-99 367.9 242 72.3
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 4.9e-99 365.5 222 79.3
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 4.9e-99 365.5 229 72.9
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 6.5e-99 365.2 229 73.4
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 1.4e-98 364.0 228 71.5
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 1.9e-98 363.6 245 71.4
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 3.2e-98 362.8 253 67.6
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 5.5e-98 362.1 252 67.1
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 1.2e-97 360.9 249 69.5
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 1.6e-97 360.5 268 66.4
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 3.5e-97 359.4 249 69.1
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 6.0e-97 358.6 227 74.4
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 6.0e-97 358.6 248 69.4
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 6.0e-97 358.6 231 71.9
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 7.9e-97 358.2 228 73.7
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 1.0e-96 357.8 226 71.2
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 1.8e-96 357.1 230 72.6
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 2.3e-96 356.7 251 70.5
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 3.0e-96 356.3 228 71.9
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 8.7e-96 354.8 243 68.7
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 1.5e-95 354.0 243 69.1
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 1.9e-95 353.6 243 68.7
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 4.3e-95 352.4 261 66.3
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 7.4e-95 351.7 229 73.4
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 9.6e-95 351.3 221 73.3
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 4.8e-94 349.0 252 66.7
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 1.3e-91 340.9 201 79.1
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 3.8e-91 339.3 235 72.3
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 1.3e-88 330.9 275 59.3
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 5.7e-87 325.5 191 78.5
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 9.7e-87 324.7 250 62.8
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 1.3e-86 324.3 182 84.1
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 2.2e-86 323.6 256 61.7
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 2.0e-84 317.0 233 64.8
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 3.4e-84 316.2 225 64.4
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 5.9e-84 315.5 255 61.2
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 1.7e-83 313.9 232 64.7
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 2.9e-83 313.2 230 66.1
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 1.4e-82 310.8 230 65.7
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 1.9e-82 310.5 225 63.1
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 9.4e-82 308.1 245 62.0
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 1.2e-81 307.8 183 80.3
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 1.6e-81 307.4 221 65.2
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 6.1e-81 305.4 183 79.2
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 1.4e-80 304.3 244 61.1
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 5.1e-80 302.4 230 63.0
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 2.0e-79 300.4 221 65.6
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 2.2e-78 297.0 241 58.5
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 3.7e-78 296.2 252 59.1
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 3.7e-78 296.2 174 79.3
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 4.2e-74 282.7 179 73.2
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 3.7e-70 269.6 155 81.9
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 7.0e-69 265.4 245 58.8
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 5.7e-63 245.7 192 63.5
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 1.8e-61 240.7 230 53.0
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 8.3e-54 215.3 265 43.0
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 6.5e-51 205.7 308 39.6
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 1.6e-49 201.1 242 49.2
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 4.4e-47 193.0 116 78.4
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 7.0e-45 185.7 288 40.3
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 7.0e-45 185.7 114 71.1
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 2.7e-44 183.7 129 64.3
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 2.9e-43 180.3 127 69.3
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 1.1e-42 178.3 113 74.3
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 1.0e-32 145.2 116 57.8
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 8.3e-30 135.6 132 55.3
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 2.0e-28 131.0 84 72.6
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 2.7e-28 130.6 78 78.2
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 3.0e-27 127.1 283 30.4
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 9.5e-26 122.1 77 72.7
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 6.2e-25 119.4 81 70.4
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 1.2e-17 95.1 76 59.2
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 9.9e-15 85.5 56 67.9
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 1.3e-11 75.1 72 50.0


User provided reference genes

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