Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22550 Nelumbo nucifera HOM05D007296 ORTHO05D009201 2.6e-65 251.9 128 100.0
Nn3g16657 Nelumbo nucifera HOM05D007296 ORTHO05D009201 1.1e-42 176.8 126 74.6
TAR371G0818 Trochodendron aralioides HOM05D007296 ORTHO05D009201 2.3e-37 159.1 127 63.0
CSS0008661 Camellia sinensis var. sinensis HOM05D007296 ORTHO05D009201 2.1e-30 136.0 130 59.2
Hma1.2p1_0818F.1_g223340 Hydrangea macrophylla HOM05D007296 ORTHO05D009201 2.0e-28 129.4 125 60.0
MBI10_g42976_MAGBIO Magnolia biondii HOM05D007296 ORTHO05D009201 6.3e-27 124.4 125 53.6
Dinv33417 Davidia involucrata HOM05D007296 ORTHO05D009201 1.5e-25 119.8 125 53.6
Potri.001G342100 Populus trichocarpa HOM05D007296 ORTHO05D009201 5.9e-25 117.9 121 50.4
TAR374G0807 Trochodendron aralioides HOM05D007296 ORTHO05D009201 7.7e-25 117.5 107 54.2
PSO017G3033 Papaver somniferum HOM05D007296 ORTHO05D009201 1.0e-24 117.1 114 55.3
Haze_14767 Corylus avellana HOM05D007296 ORTHO05D009201 1.7e-24 116.3 131 49.6
Cfa007330 Carpinus fangiana HOM05D007296 ORTHO05D009201 2.2e-24 115.9 131 49.6
Manes.15G152600 Manihot esculenta HOM05D007296 ORTHO05D009201 2.2e-24 115.9 122 52.5
QL02p073829 Quercus lobata HOM05D007296 ORTHO05D009201 2.2e-24 115.9 130 49.2
Duzib187G0331 Durio zibethinus HOM05D007296 ORTHO05D009201 2.9e-24 115.5 124 50.8
Aqoxy3G01286 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 5.0e-24 114.8 124 48.4
CiPaw.03G046500 Carya illinoinensis HOM05D007296 ORTHO05D009201 5.0e-24 114.8 124 50.0
Lj1g0014101 Lotus japonicus HOM05D007296 ORTHO05D009201 5.0e-24 114.8 117 50.4
CiPaw.04G030100 Carya illinoinensis HOM05D007296 ORTHO05D009201 6.5e-24 114.4 128 47.7
Prupe.5G162900 Prunus persica HOM05D007296 ORTHO05D009201 1.2e-22 110.2 124 52.4
Thecc.03G117800 Theobroma cacao HOM05D007296 ORTHO05D009201 1.6e-22 109.8 119 47.9
Glyma.16G068200 Glycine max HOM05D007296 ORTHO05D009201 6.1e-22 107.8 112 50.0
Medtr7g033080 Medicago truncatula HOM05D007296 ORTHO05D009201 6.1e-22 107.8 110 51.8
Aqoxy5G03689 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 8.0e-22 107.5 111 52.3
Sabra15G0109100 Salix brachista HOM05D000631 ORTHO05D000524 8.0e-22 107.5 125 45.6
Glyma.19G078800 Glycine max HOM05D007296 ORTHO05D009201 1.0e-21 107.1 113 50.4
QL10p006090 Quercus lobata HOM05D007296 ORTHO05D009201 4.0e-21 105.1 124 44.4
Ca_06610_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 5.2e-21 104.8 116 49.1
Ca_30727_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 5.2e-21 104.8 116 49.1
Aqoxy7G03797 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 6.7e-21 104.4 112 52.7
CiPaw.11G015200 Carya illinoinensis HOM05D007296 ORTHO05D009201 6.7e-21 104.4 105 53.3
Gohir.D09G030000 Gossypium hirsutum HOM05D007296 ORTHO05D009201 8.8e-21 104.0 129 47.3
TPR.G1088 Trifolium pratense HOM05D007296 ORTHO05D009201 1.1e-20 103.6 109 50.5
Gohir.A09G030400 Gossypium hirsutum HOM05D007296 ORTHO05D009201 1.5e-20 103.2 129 46.5
Ciclev10017118m.g Citrus clementina HOM05D007296 ORTHO05D009201 2.0e-20 102.8 128 47.7
Lalb_Chr22g0360681 Lupinus albus HOM05D007296 ORTHO05D009201 2.6e-20 102.4 113 48.7
Thecc.04G021100 Theobroma cacao HOM05D007296 ORTHO05D009201 2.6e-20 102.4 122 49.2
ATR0199G042 Amborella trichopoda HOM05D007296 ORTHO05D009201 1.3e-19 100.1 109 49.5
Psat3g172000 Pisum sativum HOM05D007296 ORTHO05D009201 2.2e-19 99.4 108 50.0
Lsat_1_v5_gn_2_91081 Lactuca sativa HOM05D007296 ORTHO05D009201 2.8e-19 99.0 103 54.4
SalBow1G6940 Salvia bowleyana HOM05D007296 ORTHO05D009201 3.7e-19 98.6 108 50.9
DCAR_021738 Daucus carota HOM05D000631 ORTHO05D000524 6.3e-19 97.8 110 50.9
Lalb_Chr07g0183081 Lupinus albus HOM05D007296 ORTHO05D009201 1.1e-18 97.1 123 39.0
Ciclev10022926m.g Citrus clementina HOM05D007296 ORTHO05D009201 4.1e-18 95.1 115 45.2
Cc02_g32290 Coffea canephora HOM05D007296 ORTHO05D009201 4.1e-18 95.1 98 54.1
COL.COLO4_30221 Corchorus olitorius HOM05D007296 ORTHO05D009201 7.0e-18 94.4 117 44.4
Manes.14G057736 Manihot esculenta HOM05D007296 ORTHO05D009201 9.1e-18 94.0 104 47.1
Eucgr.I01721 Eucalyptus grandis HOM05D007296 ORTHO05D009201 2.0e-17 92.8 115 48.7
Glyma.05G042900 Glycine max HOM05D007296 ORTHO05D009201 2.0e-17 92.8 122 41.8
ClCG09G019420 Citrullus lanatus HOM05D007296 ORTHO05D009201 5.9e-17 91.3 115 48.7
Phvul.003G206500 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 1.0e-16 90.5 115 42.6
Cpa.g.sc130.72 Carica papaya HOM05D007296 ORTHO05D009201 1.7e-16 89.7 133 45.9
Ca_30679_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 1.7e-16 89.7 103 42.7
Lj4g0005296 Lotus japonicus HOM05D007296 ORTHO05D009201 2.2e-16 89.4 106 46.2
Sc16g0004380 Simmondsia chinensis HOM05D007296 ORTHO05D009201 3.8e-16 88.6 132 44.7
VMungo1383G0878 Vigna mungo HOM05D007296 ORTHO05D009201 5.0e-16 88.2 123 41.5
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 6.5e-16 87.8 108 52.8
Gohir.A07G055400 Gossypium hirsutum HOM05D007296 ORTHO05D009201 8.5e-16 87.4 107 44.9
CsaV3_5G026960 Cucumis sativus L. HOM05D007296 ORTHO05D009201 1.5e-15 86.7 142 41.5
Gohir.D07G059700 Gossypium hirsutum HOM05D007296 ORTHO05D009201 1.5e-15 86.7 107 44.9
Gorai.001G063200 Gossypium raimondii HOM05D007296 ORTHO05D009201 1.5e-15 86.7 107 44.9
VMungo1215G1852 Vigna mungo HOM05D007296 ORTHO05D009201 1.5e-15 86.7 115 38.3
CAN.G473.34 Capsicum annuum HOM05D007296 ORTHO05D009201 1.9e-15 86.3 119 43.7
Atru.chr6.2441 Acer truncatum HOM05D007296 ORTHO05D009201 2.5e-15 85.9 113 46.9
MELO3C021597.2 Cucumis melo HOM05D007296 ORTHO05D009201 3.2e-15 85.5 141 41.8
Migut.H00030 Erythranthe guttata HOM05D007296 ORTHO05D009201 1.2e-14 83.6 134 44.8
Actinidia33329 Actinidia chinensis HOM05D007296 ORTHO05D009201 1.6e-14 83.2 92 52.2
Lsat_1_v5_gn_0_6101 Lactuca sativa HOM05D007296 ORTHO05D009201 2.7e-14 82.4 113 47.8
PGSC0003DMG400012614 Solanum tuberosum HOM05D007296 ORTHO05D009201 3.6e-14 82.0 112 43.8
PGR142G0831 Punica granatum HOM05D007296 ORTHO05D009201 6.1e-14 81.3 109 46.8
Glyma.05G115500 Glycine max HOM05D007296 ORTHO05D009201 1.0e-13 80.5 115 44.3
TWI56G0033 Tripterygium wilfordii HOM05D007296 ORTHO05D009201 1.0e-13 80.5 110 50.0
DCAR_015066 Daucus carota HOM05D007296 ORTHO05D009201 1.4e-13 80.1 112 42.9
Phvul.008G151600 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 1.4e-13 80.1 87 43.7
Sed0024202 Sechium edule HOM05D007296 ORTHO05D009201 1.4e-13 80.1 119 42.0
Glyma.19G051600 Glycine max HOM05D007296 ORTHO05D009201 1.8e-13 79.7 114 44.7
SGA_v2.0_scaffold18G08254 Striga asiatica HOM05D007296 ORTHO05D009201 3.0e-13 79.0 114 41.2
SGA_v2.0_scaffold135G34923 Striga asiatica HOM05D007296 ORTHO05D009201 6.8e-13 77.8 106 43.4
THA.LOC104821171 Tarenaya hassleriana HOM05D007296 ORTHO05D009201 2.0e-12 76.3 106 46.2
Ah.12g055220 Amaranthus hybridus HOM05D007296 ORTHO05D009201 5.7e-12 74.7 124 36.3
EL10Ac5g12075 Beta vulgaris HOM05D007296 ORTHO05D009201 9.8e-12 73.9 113 45.1
Prupe.3G295100 Prunus persica HOM05D007296 ORTHO05D009201 1.3e-11 73.6 77 51.9
Gorai.006G035000 Gossypium raimondii HOM05D007296 ORTHO05D009201 4.8e-11 71.6 129 37.2
QL10p006100 Quercus lobata HOM05D007296 ORTHO05D009201 1.1e-10 70.5 92 40.2
ECA246G1504 Erigeron canadensis HOM05D007296 ORTHO05D009201 1.4e-10 70.1 124 37.1
SGA_v2.0_scaffold47G17522 Striga asiatica HOM05D000631 ORTHO05D000524 1.4e-10 70.1 107 40.2
Phvul.004G061700 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 3.1e-10 68.9 117 37.6
Thhalv10014918m.g Eutrema salsugineum HOM05D007296 ORTHO05D009201 7.0e-10 67.8 94 47.9
Aa31LG11G15190 Aethionema arabicum HOM05D007296 ORTHO05D009201 9.1e-10 67.4 77 50.6
Sp6g29610 Schrenkiella parvula HOM05D007296 ORTHO05D009201 9.1e-10 67.4 123 41.5
AL6G25130 Arabidopsis lyrata HOM05D007296 ORTHO05D009201 2.7e-09 65.9 123 43.1
CARHR198900 Cardamine hirsuta HOM05D007296 ORTHO05D009201 3.5e-09 65.5 123 42.3
Migut.K01416 Erythranthe guttata HOM05D007296 ORTHO05D009201 3.5e-09 65.5 105 42.9
FAN02G1968 Fragaria x ananassa HOM05D007296 ORTHO05D009201 3.5e-09 65.5 77 54.5
SalBow7G1031 Salvia bowleyana HOM05D007296 ORTHO05D009201 3.5e-09 65.5 103 38.8
FAN09G0682 Fragaria x ananassa HOM05D007296 ORTHO05D009201 4.5e-09 65.1 110 44.5
Sopen02g038130 Solanum pennellii HOM05D007296 ORTHO05D009201 4.5e-09 65.1 106 37.7
Carub.0006s1259 Capsella rubella HOM05D007296 ORTHO05D009201 5.9e-09 64.7 87 48.3
Solyc02g093525.1 Solanum lycopersicum HOM05D007296 ORTHO05D009201 5.9e-09 64.7 106 38.7
AT5G14410 Arabidopsis thaliana HOM05D007296 ORTHO05D009201 1.3e-08 63.5 112 42.9
A10p24110 Brassica napus HOM05D007296 ORTHO05D009201 1.7e-08 63.2 123 41.5
C09p62750 Brassica napus HOM05D007296 ORTHO05D009201 1.7e-08 63.2 90 48.9
BraA10t44476Z Brassica rapa HOM05D007296 ORTHO05D009201 1.7e-08 63.2 123 41.5
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 1.7e-08 63.2 120 37.5
BolC9t59112H Brassica oleracea HOM05D007296 ORTHO05D009201 2.9e-08 62.4 90 46.7
FvH4_6g51980 Fragaria vesca HOM05D007296 ORTHO05D009201 6.5e-08 61.2 77 51.9
FAN14G0692 Fragaria x ananassa HOM05D007296 ORTHO05D009201 8.5e-08 60.8 110 42.7
Rhsim08G0048000 Rhododendron simsii HOM05D007296 ORTHO05D009201 1.1e-07 60.5 68 51.5
FAN05G3275 Fragaria x ananassa HOM05D007296 ORTHO05D009201 4.2e-07 58.5 110 40.0
Os01g0938400 Oryza sativa ssp. japonica HOM05D024678 ORTHO05D025976 4.2e-07 58.5 59 55.9
Atru.chr9.2613 Acer truncatum HOM05D007296 ORTHO05D009201 5.5e-07 58.2 70 44.3


User provided reference genes

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