Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 2.3e-113 412.1 199 100.0
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 3.8e-71 271.9 202 71.3
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.0e-63 247.3 202 64.4
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 9.7e-59 230.7 212 57.5
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 8.2e-58 227.6 212 55.2
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 1.4e-57 226.9 214 56.5
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 5.3e-57 224.9 207 57.5
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 5.3e-57 224.9 207 57.5
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 3.8e-55 218.8 220 51.4
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 3.8e-55 218.8 226 51.8
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 1.1e-54 217.2 198 56.1
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 1.1e-54 217.2 199 58.3
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 2.5e-54 216.1 201 56.2
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 4.2e-54 215.3 203 55.2
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.2e-53 213.8 200 58.5
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 1.6e-53 213.4 201 54.2
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 2.1e-53 213.0 199 54.3
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 6.1e-53 211.5 198 55.6
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 2.3e-52 209.5 199 53.3
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 2.3e-52 209.5 205 53.2
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 2.3e-52 209.5 202 54.5
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 3.9e-52 208.8 205 52.2
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.4e-51 205.3 199 52.3
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 2.8e-50 202.6 217 52.5
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 2.8e-50 202.6 209 53.6
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 4.8e-50 201.8 205 52.2
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 6.3e-50 201.4 198 55.1
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 8.2e-50 201.1 203 55.7
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 1.4e-49 200.3 200 55.5
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 2.4e-49 199.5 212 53.3
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 3.1e-49 199.1 135 71.9
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 4.1e-49 198.7 222 53.2
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 3.5e-48 195.7 203 52.2
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 1.0e-47 194.1 200 55.0
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.3e-47 193.7 212 52.8
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 2.2e-47 193.0 199 56.3
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 2.9e-47 192.6 209 47.8
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 5.0e-47 191.8 206 51.0
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 8.5e-47 191.0 250 48.0
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 8.5e-47 191.0 250 48.0
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 8.5e-47 191.0 223 51.6
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 1.9e-46 189.9 205 48.8
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 9.4e-46 187.6 198 52.0
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 1.8e-44 183.3 198 53.0
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.5e-43 180.3 210 49.0
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 1.3e-42 177.2 226 46.0
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 1.7e-42 176.8 275 39.3
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 1.4e-41 173.7 209 48.8
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 4.1e-41 172.2 198 51.0
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 7.0e-41 171.4 202 49.5
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 9.1e-41 171.0 189 50.8
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 2.7e-40 169.5 133 63.9
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 1.0e-39 167.5 142 62.0
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 1.7e-39 166.8 193 51.3
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 2.2e-39 166.4 217 44.2
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 8.5e-39 164.5 235 43.4
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 2.5e-38 162.9 226 43.4
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 5.5e-38 161.8 217 43.8
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 1.2e-37 160.6 231 43.7
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 8.0e-37 157.9 124 60.5
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 1.4e-36 157.1 217 44.7
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 1.4e-36 157.1 172 50.6
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 2.3e-36 156.4 189 50.8
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 3.0e-36 156.0 102 67.6
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 4.0e-36 155.6 125 58.4
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 6.8e-36 154.8 207 45.9
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 8.8e-36 154.5 210 43.8
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.2e-35 154.1 116 65.5
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.5e-35 153.7 223 43.9
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 4.4e-35 152.1 125 57.6
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 4.4e-35 152.1 129 52.7
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 4.4e-35 152.1 217 41.9
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 5.7e-35 151.8 174 49.4
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 7.5e-35 151.4 210 45.2
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 7.5e-35 151.4 215 42.3
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 7.5e-35 151.4 210 44.3
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 9.8e-35 151.0 208 42.8
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 1.3e-34 150.6 203 42.4
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 1.3e-34 150.6 135 59.3
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 1.7e-34 150.2 234 40.6
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 2.2e-34 149.8 207 40.6
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 4.8e-34 148.7 198 43.9
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 6.3e-34 148.3 143 55.9
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 8.3e-34 147.9 143 55.2
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 8.3e-34 147.9 170 48.2
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.4e-33 147.1 127 59.1
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 1.4e-33 147.1 125 56.8
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 1.4e-33 147.1 136 55.9
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 4.1e-33 145.6 144 54.9
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 4.1e-33 145.6 135 54.8
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.1e-33 145.6 143 55.2
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 7.0e-33 144.8 200 43.5
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 9.1e-33 144.4 127 58.3
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 9.1e-33 144.4 127 58.3
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 1.2e-32 144.1 203 39.9
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.7e-32 142.9 143 53.8
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 3.5e-32 142.5 209 40.2
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 4.5e-32 142.1 204 42.6
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 5.9e-32 141.7 198 43.4
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 2.2e-31 139.8 197 41.6
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 5.0e-31 138.7 205 45.4
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 8.5e-31 137.9 127 56.7
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 2.5e-30 136.3 153 45.1
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 4.2e-30 135.6 198 38.9
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 5.5e-30 135.2 136 48.5
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 1.2e-29 134.0 181 45.3
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 2.8e-29 132.9 220 39.1
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 3.6e-29 132.5 236 37.7
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 3.6e-29 132.5 87 67.8
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 2.3e-28 129.8 150 48.0
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 3.0e-28 129.4 204 41.2
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 2.6e-27 126.3 214 38.3
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 5.7e-27 125.2 136 50.0
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 7.5e-27 124.8 216 36.6
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 9.8e-27 124.4 165 43.0
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 2.2e-26 123.2 179 44.7
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 2.4e-25 119.8 212 38.7
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 2.4e-25 119.8 143 47.6
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 3.1e-25 119.4 121 49.6
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 7.0e-25 118.2 224 36.6
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 7.0e-25 118.2 177 44.1
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 5.9e-24 115.2 96 56.2
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 5.9e-24 115.2 96 56.2
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 7.8e-24 114.8 96 55.2
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 7.8e-24 114.8 96 55.2
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 1.7e-23 113.6 84 60.7
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 2.9e-23 112.8 146 46.6
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 2.9e-23 112.8 205 39.0
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 3.8e-23 112.5 89 60.7
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 3.8e-23 112.5 89 60.7
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 5.0e-23 112.1 89 60.7
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 5.0e-23 112.1 89 60.7
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 6.6e-23 111.7 136 49.3
PSO782G3492 Papaver somniferum HOM05D004407 ORTHO05D005074 5.6e-22 108.6 243 35.8
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 1.2e-21 107.5 137 45.3
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 1.2e-21 107.5 137 45.3
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 2.8e-21 106.3 136 45.6
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 8.0e-21 104.8 144 44.4
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 8.0e-21 104.8 144 44.4
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 1.4e-20 104.0 144 43.8
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 1.4e-20 104.0 144 43.8
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 1.4e-20 104.0 153 44.4
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 1.8e-20 103.6 89 56.2
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 1.8e-20 103.6 89 56.2
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 3.0e-20 102.8 144 45.8
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 4.0e-20 102.4 143 45.5
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 4.0e-20 102.4 143 45.5
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 2.0e-19 100.1 134 42.5
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 4.4e-19 99.0 89 52.8
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 5.7e-19 98.6 74 62.2
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 7.5e-19 98.2 89 53.9
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 4.9e-18 95.5 104 51.0
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 1.7e-15 87.0 184 34.8
SEGI_17639 Sequoiadendron giganteum HOM05D050174 ORTHO05D005074 6.6e-15 85.1 214 33.2
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 1.1e-14 84.3 125 43.2
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 1.9e-14 83.6 90 41.1
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 7.3e-14 81.6 86 51.2
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 6.2e-13 78.6 203 33.5
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.8e-12 77.0 202 31.7
Sp2g16550 Schrenkiella parvula HOM05D013829 ORTHO05D015952 2.3e-12 76.6 200 32.5
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 2.3e-12 76.6 84 45.2
AT5G24640 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 4.4e-11 72.4 86 45.3
Nitab4.5_0005414g0060 Nicotiana tabacum HOM05D004407 ORTHO05D005074 4.4e-11 72.4 137 38.0
Nitab4.5_0000040g0600 Nicotiana tabacum HOM05D004407 ORTHO05D005074 7.5e-11 71.6 135 37.8
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 1.3e-10 70.9 86 45.3
CANSAT64G1789 Cannabis sativa HOM05D004407 ORTHO05D005074 3.2e-09 66.2 139 35.3
Carub.0005s0566 Capsella rubella HOM05D013829 ORTHO05D015952 5.4e-09 65.5 202 33.2
BcaC06g33826 Brassica carinata HOM05D013829 ORTHO05D015952 7.0e-09 65.1 199 32.7
C07p36420 Brassica napus HOM05D013829 ORTHO05D015952 9.2e-09 64.7 204 29.4
Medtr4g061650 Medicago truncatula HOM05D004407 ORTHO05D005074 1.2e-08 64.3 53 56.6
A06p41240 Brassica napus HOM05D013829 ORTHO05D015952 3.5e-08 62.8 206 31.6
BraA06t27048Z Brassica rapa HOM05D013829 ORTHO05D015952 3.5e-08 62.8 206 31.6
Aqoxy5G03598 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 4.6e-08 62.4 77 42.9
AL5G16690 Arabidopsis lyrata HOM05D013829 ORTHO05D015952 7.8e-08 61.6 201 30.3
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 3.0e-07 59.7 220 30.0
CARHR148680 Cardamine hirsuta HOM05D013829 ORTHO05D015952 5.0e-07 58.9 123 34.1
Pp3c27_1870 Physcomitrium patens HOM05D018410 ORTHO05D021325 1.1e-06 57.8 102 38.2
BcaNung05649 Brassica carinata HOM05D013829 ORTHO05D015952 3.3e-06 56.2 50 54.0
AT3G27355 Arabidopsis thaliana HOM05D013829 ORTHO05D015952 4.3e-06 55.8 206 27.7
BolC7t44160H Brassica oleracea HOM05D013829 ORTHO05D015952 4.3e-06 55.8 209 28.7
Carub.0006s3296 Capsella rubella HOM05D004407 ORTHO05D005074 4.3e-06 55.8 91 39.6


User provided reference genes

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