Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 0.0e+00 1977.6 1016 100.0
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1424.1 1012 71.9
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 0.0e+00 1315.1 1018 66.8
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1314.3 1029 66.0
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 0.0e+00 1298.9 1030 65.4
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 0.0e+00 1295.4 1000 66.7
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 0.0e+00 1291.6 1031 63.9
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 0.0e+00 1289.6 1022 64.9
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 0.0e+00 1289.2 1056 63.1
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 0.0e+00 1284.6 1025 65.3
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1263.4 1019 64.8
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 0.0e+00 1259.6 1021 63.7
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 0.0e+00 1255.0 1025 64.1
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 0.0e+00 1253.0 1020 63.5
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 0.0e+00 1249.2 1024 63.9
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 0.0e+00 1246.9 1017 63.3
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 0.0e+00 1243.4 1018 63.0
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1242.6 1018 62.9
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1242.3 1010 63.6
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 0.0e+00 1236.1 1020 63.3
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1236.1 1033 63.4
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 0.0e+00 1234.9 1025 61.7
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 0.0e+00 1233.8 1033 63.4
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 0.0e+00 1230.3 1019 62.0
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 0.0e+00 1228.8 1021 63.4
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1226.8 1028 62.9
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1221.5 1035 63.2
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 0.0e+00 1214.1 1024 60.5
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 0.0e+00 1203.7 1041 60.3
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 0.0e+00 1203.0 1029 61.0
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 0.0e+00 1194.1 1078 60.1
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 0.0e+00 1191.0 1018 58.8
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 0.0e+00 1184.5 1024 58.9
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 0.0e+00 1182.9 1018 58.2
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 0.0e+00 1175.2 1016 60.7
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 0.0e+00 1170.2 1022 59.7
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 0.0e+00 1160.2 1024 59.6
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 0.0e+00 1159.8 1021 57.8
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 0.0e+00 1159.8 993 60.1
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 0.0e+00 1157.9 1012 59.5
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 0.0e+00 1151.7 1027 57.4
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 0.0e+00 1149.8 1023 58.7
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 0.0e+00 1149.4 1021 59.1
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 0.0e+00 1148.7 1026 59.4
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1148.7 1022 59.2
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 0.0e+00 1146.7 915 65.5
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 0.0e+00 1146.3 1021 58.2
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 0.0e+00 1144.0 1020 58.0
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 0.0e+00 1143.3 1024 58.5
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 0.0e+00 1142.1 1009 59.4
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 0.0e+00 1141.3 1024 58.3
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 0.0e+00 1140.6 1026 59.0
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 0.0e+00 1139.0 1044 58.0
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 0.0e+00 1135.6 1060 58.0
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 0.0e+00 1129.8 1010 59.6
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 0.0e+00 1123.6 1020 58.8
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 0.0e+00 1122.1 1019 56.8
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 0.0e+00 1119.8 1021 57.2
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 0.0e+00 1113.2 1023 57.9
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 0.0e+00 1112.8 1023 58.2
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 0.0e+00 1103.2 1017 56.5
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 0.0e+00 1096.6 1025 57.2
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 0.0e+00 1092.0 1033 56.0
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1091.6 1024 58.3
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 0.0e+00 1091.3 1029 57.6
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1088.6 1022 58.2
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 0.0e+00 1084.7 1020 56.0
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 0.0e+00 1078.2 995 57.9
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 0.0e+00 1075.1 1022 55.6
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 8.3e-311 1070.5 1021 55.3
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 1.0e-310 1070.1 1029 54.2
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 3.1e-310 1068.5 1023 55.1
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 2.2e-308 1062.4 1025 54.5
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 1.2e-306 1056.6 957 58.4
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 2.1e-306 1055.8 1025 54.4
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 1.1e-304 1050.0 1032 54.1
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 9.6e-304 1047.0 1017 56.5
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 4.8e-303 1044.6 1027 54.1
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 3.1e-302 1042.0 1041 55.7
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 6.9e-302 1040.8 1027 53.9
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 7.6e-301 1037.3 1045 53.2
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 3.2e-299 1031.9 1040 54.7
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 1.0e-297 1026.9 1027 54.9
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 2.8e-295 1018.8 911 57.6
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 6.9e-294 1014.2 1016 52.9
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 1.3e-289 1000.0 984 55.5
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 1.6e-287 993.0 1022 52.4
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 2.4e-286 989.2 853 61.8
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 1.0e-281 973.8 1015 51.6
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 4.1e-278 961.8 1029 52.8
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 1.3e-255 887.1 775 61.4
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 3.4e-248 862.4 727 60.8
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 2.8e-247 859.4 1031 49.3
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 1.1e-209 734.6 653 61.1
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 3.4e-208 729.6 660 58.5
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 4.9e-207 725.7 660 58.2
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 3.2e-190 669.8 586 58.0
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 2.5e-179 633.6 620 55.6
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 1.1e-171 608.2 1079 35.2
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 1.3e-170 604.7 568 58.8
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 5.1e-164 582.8 1095 36.4
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 3.0e-148 530.4 528 55.5
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 1.2e-144 518.5 902 37.0
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 1.2e-133 481.9 347 70.9
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 1.6e-109 401.7 1115 29.7
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 1.7e-106 391.7 1123 29.5
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 4.6e-104 383.6 396 52.0
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 3.2e-97 360.9 318 61.3
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.1e-94 352.4 438 42.7
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 1.9e-73 282.0 375 42.9
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 1.9e-73 282.0 217 64.1
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 9.9e-67 259.6 147 91.2
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 2.4e-60 238.4 272 50.4
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 7.1e-57 226.9 564 33.0
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 4.3e-46 191.0 230 48.7
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 2.8e-45 188.3 102 92.2
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 5.9e-43 180.6 102 89.2
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 3.8e-42 177.9 177 57.6
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 5.5e-41 174.1 229 43.2
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 2.8e-37 161.8 142 52.8
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 2.4e-28 132.1 169 47.9
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 5.0e-26 124.4 423 27.4
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 3.4e-22 111.7 146 41.8
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 5.7e-22 110.9 81 60.5
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 8.3e-21 107.1 128 46.9
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 3.1e-20 105.1 77 61.0
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.3e-18 99.8 67 62.7
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 3.8e-18 98.2 222 36.5
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 3.8e-18 98.2 106 45.3
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 6.8e-15 87.4 156 41.7
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 1.3e-13 83.2 236 28.8
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 6.3e-13 80.9 50 70.0
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 7.0e-12 77.4 65 60.0
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 2.3e-10 72.4 46 69.6
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 2.3e-10 72.4 46 69.6
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 1.5e-09 69.7 65 56.9
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 3.3e-09 68.6 47 63.8
MCO03G522 Micromonas commoda HOM05D005223 ORTHO05D006449 1.5e-06 59.7 396 24.0
MD00G1179800 Malus domestica HOM05D005223 ORTHO05D006449 9.8e-06 57.0 81 45.7


User provided reference genes

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