Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 1.2e-138 496.5 255 100.0
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 9.4e-91 337.4 255 68.6
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 4.8e-87 325.1 259 68.3
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 1.1e-86 323.9 256 66.0
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 9.1e-86 320.9 256 66.4
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 1.2e-85 320.5 259 65.3
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 3.5e-85 318.9 259 66.0
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 3.5e-85 318.9 255 66.7
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 4.5e-85 318.5 249 68.3
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 5.9e-85 318.2 260 65.0
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 7.7e-85 317.8 260 65.0
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 2.9e-84 315.8 256 64.8
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 8.5e-84 314.3 255 65.9
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 2.5e-83 312.8 246 68.3
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 3.2e-83 312.4 276 60.5
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 9.4e-83 310.8 258 65.1
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.6e-82 310.1 262 64.1
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 2.7e-82 309.3 256 63.3
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 6.1e-82 308.1 250 60.8
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.3e-81 306.2 256 63.3
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 2.3e-81 306.2 246 65.0
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.3e-81 306.2 246 64.2
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 4.0e-81 305.4 256 62.9
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 5.2e-81 305.1 288 58.0
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 8.8e-81 304.3 258 63.2
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 8.8e-81 304.3 246 65.0
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 1.2e-80 303.9 255 62.0
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.5e-80 303.5 255 63.5
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.0e-80 303.1 257 64.2
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 4.4e-80 302.0 246 63.8
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 7.5e-80 301.2 258 60.1
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 1.3e-79 300.4 256 63.3
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.7e-79 300.1 247 64.4
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 2.8e-79 299.3 256 61.7
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 3.7e-79 298.9 261 62.5
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 3.7e-79 298.9 260 61.5
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 4.8e-79 298.5 247 64.4
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 6.3e-79 298.1 263 61.2
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 6.3e-79 298.1 264 61.7
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 6.3e-79 298.1 236 66.9
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 8.3e-79 297.7 256 60.9
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 8.3e-79 297.7 256 60.5
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 2.4e-78 296.2 262 60.3
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 4.1e-78 295.4 235 63.8
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 1.2e-77 293.9 228 67.5
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.2e-77 293.9 255 59.6
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 2.0e-77 293.1 250 62.0
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 3.5e-77 292.4 250 61.2
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 4.5e-77 292.0 258 60.1
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 4.5e-77 292.0 256 60.2
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 4.5e-77 292.0 239 65.7
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 4.5e-77 292.0 250 61.2
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 7.7e-77 291.2 247 62.3
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 7.7e-77 291.2 238 65.1
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 1.0e-76 290.8 258 62.0
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 2.3e-76 289.7 235 63.8
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 2.9e-76 289.3 230 64.8
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 3.8e-76 288.9 259 59.8
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 3.8e-76 288.9 235 64.7
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 3.8e-76 288.9 248 61.7
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 6.6e-76 288.1 246 62.6
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 6.6e-76 288.1 257 59.5
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 6.6e-76 288.1 246 61.8
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 1.1e-75 287.3 260 59.6
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 1.5e-75 287.0 259 61.0
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 2.5e-75 286.2 257 61.9
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 9.5e-75 284.3 250 60.4
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 2.8e-74 282.7 255 58.4
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 2.8e-74 282.7 256 58.2
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 3.6e-74 282.3 249 61.0
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 4.7e-74 282.0 262 59.9
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 1.4e-73 280.4 262 59.5
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 1.4e-73 280.4 250 56.4
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 5.2e-73 278.5 288 56.2
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.2e-72 277.3 243 62.1
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 1.5e-72 276.9 230 65.2
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 2.0e-72 276.6 258 59.7
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 2.0e-72 276.6 248 60.9
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 5.7e-72 275.0 232 60.8
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 1.3e-71 273.9 257 57.6
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 2.2e-71 273.1 254 58.7
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 2.8e-71 272.7 231 61.5
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 3.7e-71 272.3 284 52.5
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 6.3e-71 271.6 255 59.6
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 1.4e-70 270.4 256 55.5
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 1.4e-70 270.4 256 56.2
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 2.4e-70 269.6 288 54.5
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 4.1e-70 268.9 248 58.1
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 5.4e-70 268.5 203 67.0
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 5.4e-70 268.5 288 54.2
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 1.6e-69 266.9 237 63.3
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 2.7e-69 266.2 233 58.8
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 3.5e-69 265.8 253 56.5
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 7.8e-69 264.6 248 60.5
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 2.9e-68 262.7 250 58.4
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 5.0e-68 261.9 256 56.6
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 6.6e-68 261.5 231 61.5
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 4.3e-67 258.8 262 55.7
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 5.6e-67 258.5 237 57.4
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 2.1e-66 256.5 259 54.8
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 2.8e-66 256.1 244 60.2
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 3.6e-66 255.8 259 57.1
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 4.7e-66 255.4 228 56.1
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 4.7e-66 255.4 259 56.8
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 8.0e-66 254.6 264 54.2
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 8.0e-66 254.6 264 54.2
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 1.0e-65 254.2 247 58.3
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 1.0e-65 254.2 251 57.8
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 1.8e-65 253.4 261 54.0
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 5.2e-65 251.9 257 55.3
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 8.9e-65 251.1 203 67.0
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 7.5e-64 248.1 256 55.9
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 1.3e-63 247.3 262 52.7
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 1.3e-63 247.3 262 52.7
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 1.7e-63 246.9 169 75.7
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 4.9e-63 245.4 193 66.8
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 3.0e-60 236.1 264 50.8
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 5.0e-60 235.3 230 54.8
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 8.1e-58 228.0 228 56.1
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 1.3e-55 220.7 194 59.8
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 1.1e-54 217.6 171 66.1
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 5.4e-54 215.3 263 49.0
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 9.2e-54 214.5 234 50.9
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 3.0e-52 209.5 263 48.3
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 6.6e-52 208.4 189 56.6
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 5.4e-46 188.7 148 65.5
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 7.1e-46 188.3 245 51.4
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 2.7e-45 186.4 233 45.5
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 7.8e-45 184.9 120 75.0
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 5.1e-44 182.2 169 58.0
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 1.8e-41 173.7 120 70.8
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 2.2e-39 166.8 124 65.3
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 2.7e-37 159.8 205 51.2
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 7.8e-37 158.3 234 42.7
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 1.5e-35 154.1 234 40.6
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 4.8e-34 149.1 219 43.8
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 3.1e-33 146.4 116 70.7
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.9e-30 137.1 116 60.3
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 3.0e-28 129.8 152 49.3
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 5.6e-27 125.6 82 70.7
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 9.6e-27 124.8 130 54.6
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.8e-26 123.2 130 54.6
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 6.2e-26 122.1 166 45.8
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 2.9e-23 113.2 159 45.9
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 1.1e-22 111.3 118 52.5
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 1.1e-22 111.3 118 52.5
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 1.1e-22 111.3 118 52.5
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 8.1e-18 95.1 249 32.5
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 6.9e-17 92.0 144 41.7
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 6.9e-17 92.0 104 52.9
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.5e-16 90.9 194 35.6
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 1.0e-15 88.2 158 44.9
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 9.6e-11 71.6 79 50.6
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 8.2e-10 68.6 59 62.7
CDE08G0115 Ceratophyllum demersum HOM05D004631 ORTHO05D005223 2.4e-09 67.0 67 50.7
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 2.9e-07 60.1 44 63.6
PSO782G2536 Papaver somniferum HOM05D004631 ORTHO05D005223 5.0e-07 59.3 63 50.8
SMO361G0571 Selaginella moellendorffii HOM05D018282 ORTHO05D005223 1.4e-06 57.8 47 63.8
Cre10.g443650 Chlamydomonas reinhardtii HOM05D004631 ORTHO05D005223 9.3e-06 55.1 112 34.8


User provided reference genes

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