Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 2188.7 1129 100.0
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 2037.3 1092 94.3
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1994.5 1093 92.2
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1991.1 1091 91.8
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1989.2 1094 92.0
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1979.9 1092 90.9
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1965.7 1093 90.3
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1961.0 1092 90.1
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1960.7 1091 89.9
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1960.7 1093 89.9
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1959.1 1091 90.7
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1956.4 1091 90.3
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1951.8 1093 89.8
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1951.8 1091 89.6
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1951.8 1091 89.6
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1944.1 1091 89.5
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1942.9 1091 89.6
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1941.4 1091 88.7
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1941.0 1091 89.3
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1937.5 1091 89.5
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1929.1 1091 89.0
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1927.9 1092 87.9
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1926.8 1094 89.0
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1924.8 1091 88.2
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1924.4 1091 88.3
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1921.4 1091 88.2
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1919.4 1091 88.5
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1919.1 1092 88.1
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1919.1 1091 88.3
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1919.1 1091 88.3
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1918.7 1091 88.7
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1914.8 1091 88.3
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1913.7 1092 87.7
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1913.3 1125 87.2
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1911.7 1092 89.3
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1910.6 1091 87.1
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1909.8 1093 88.2
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1908.3 1091 87.5
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1908.3 1094 87.1
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1908.3 1091 87.4
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1907.1 1091 87.4
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1906.0 1091 87.5
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1905.6 1091 87.5
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1905.2 1135 85.7
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1904.8 1093 87.6
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1904.8 1091 87.8
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1903.6 1091 87.4
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1902.5 1091 87.0
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1901.7 1091 86.9
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1900.2 1091 87.6
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1897.1 1092 86.6
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1895.6 1091 87.4
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1895.6 1091 88.1
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1895.2 1137 84.5
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1894.4 1091 87.2
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1894.0 1091 86.1
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1891.7 1103 85.8
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1890.2 1091 85.8
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1887.5 1092 87.1
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1885.2 1091 86.8
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1883.6 1091 87.0
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1883.2 1091 86.2
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1881.7 1092 86.4
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1880.5 1091 86.8
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1879.8 1092 85.9
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1879.4 1091 86.8
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1877.4 1092 86.5
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1876.7 1093 86.1
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1876.7 1091 85.8
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1875.5 1091 85.8
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1873.6 1092 85.8
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1873.6 1091 85.8
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1872.1 1091 85.8
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1870.5 1092 85.5
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1870.5 1093 86.1
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1870.5 1135 84.0
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1870.1 1092 85.4
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1864.4 1091 85.3
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1858.2 1091 85.2
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1858.2 1091 85.2
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1858.2 1092 85.2
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1857.8 1091 85.2
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1857.0 1091 85.2
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1852.0 1091 85.0
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1845.1 1091 85.2
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1819.7 1091 84.1
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1810.4 1093 83.7
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1792.7 1092 81.8
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1774.2 1258 74.8
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1771.9 1114 81.7
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1764.2 1093 81.4
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1763.4 1106 80.7
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1747.3 1092 80.2
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1743.4 1066 82.8
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1727.2 1095 78.5
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1618.6 1091 72.9
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1610.9 1092 73.5
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1609.7 920 87.1
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1585.5 1091 76.9
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1530.4 867 87.5
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1490.3 1095 68.0
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1489.2 848 89.6
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1488.8 1098 67.8
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1443.7 1094 66.8
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1441.0 798 91.2
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1424.1 1098 65.4
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1412.1 839 85.6
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1410.2 1113 64.3
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1343.6 797 84.6
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1195.3 713 82.2
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1141.7 696 84.9
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 0.0e+00 1129.4 857 65.5
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 0.0e+00 1100.1 1105 49.7
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 2.4e-295 1019.2 587 84.0
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 6.5e-293 1011.1 577 91.2
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 4.8e-288 995.0 742 71.4
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.3e-277 960.3 598 84.1
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 1.3e-272 943.7 517 88.6
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 3.7e-272 942.2 547 89.0
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 4.5e-262 908.7 627 74.2
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.5e-257 893.6 516 82.9
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 7.6e-225 785.0 465 82.6
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 1.0e-213 748.0 402 90.3
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 4.9e-208 729.2 406 85.7
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 2.2e-147 527.7 358 78.2
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 3.5e-145 520.4 271 94.1
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 2.0e-116 424.9 378 57.4
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 3.3e-95 354.4 205 83.4
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 2.2e-91 341.7 194 87.6
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 1.5e-60 239.2 167 76.6
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 2.7e-49 201.8 117 91.5
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 7.7e-44 183.7 144 71.5
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 1.2e-39 169.9 87 94.3
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 5.4e-37 161.0 103 83.5
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 3.5e-36 158.3 109 78.9
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 1.3e-35 156.4 78 93.6
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 1.9e-34 152.5 96 84.4
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 2.7e-20 105.5 84 72.6
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 1.1e-18 100.1 109 50.5
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 1.9e-18 99.4 81 61.7
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 2.5e-18 99.0 51 90.2
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 3.3e-18 98.6 51 92.2
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 4.3e-18 98.2 51 92.2
TAR381G0591 Trochodendron aralioides HOM05D000199 ORTHO05D015700 4.0e-08 65.1 37 81.1
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 2.2e-06 59.3 338 26.3


User provided reference genes

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