Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22324 Nelumbo nucifera HOM05D005988 ORTHO05D007392 3.5e-51 204.5 94 100.0
CiPaw.05G109900 Carya illinoinensis HOM05D005988 ORTHO05D007392 1.1e-41 172.9 94 84.0
Cfa009369 Carpinus fangiana HOM05D005988 ORTHO05D007392 1.5e-41 172.6 94 84.0
Haze_12418 Corylus avellana HOM05D005988 ORTHO05D007392 1.5e-41 172.6 94 84.0
Hma1.2p1_0065F.1_g035500 Hydrangea macrophylla HOM05D005988 ORTHO05D007392 1.9e-41 172.2 91 83.5
MBI01_g01248_MAGBIO Magnolia biondii HOM05D005988 ORTHO05D007392 1.9e-41 172.2 84 92.9
Manes.13G012300 Manihot esculenta HOM05D005988 ORTHO05D007392 1.9e-41 172.2 87 88.5
Manes.12G011400 Manihot esculenta HOM05D005988 ORTHO05D007392 3.3e-41 171.4 87 86.2
vmacro01331 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 7.3e-41 170.2 84 88.1
vmacro05591 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 7.3e-41 170.2 84 88.1
vmacro23425 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 7.3e-41 170.2 84 88.1
ClCG11G013680 Citrullus lanatus HOM05D005988 ORTHO05D007392 1.3e-40 169.5 90 83.3
Cc11_g16890 Coffea canephora HOM05D005988 ORTHO05D007392 2.1e-40 168.7 88 83.0
CANSAT01G3258 Cannabis sativa HOM05D005988 ORTHO05D007392 3.6e-40 167.9 87 83.9
Prupe.1G225900 Prunus persica HOM05D005988 ORTHO05D007392 3.6e-40 167.9 93 82.8
Thecc.02G210500 Theobroma cacao HOM05D005988 ORTHO05D007392 3.6e-40 167.9 91 78.0
CSS0025775 Camellia sinensis var. sinensis HOM05D005988 ORTHO05D007392 6.2e-40 167.2 91 79.1
Eucgr.B03491 Eucalyptus grandis HOM05D005988 ORTHO05D007392 8.1e-40 166.8 88 84.1
PSO017G5437 Papaver somniferum HOM05D005988 ORTHO05D007392 1.4e-39 166.0 91 82.4
PGR102G1123 Punica granatum HOM05D005988 ORTHO05D007392 1.4e-39 166.0 88 81.8
Cpa.g.sc43.58 Carica papaya HOM05D005988 ORTHO05D007392 1.8e-39 165.6 88 83.0
Rhsim04G0162300 Rhododendron simsii HOM05D005988 ORTHO05D007392 1.8e-39 165.6 84 84.5
CDE06G1110 Ceratophyllum demersum HOM05D005988 ORTHO05D007392 2.4e-39 165.2 83 88.0
Gohir.A03G126200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 2.4e-39 165.2 93 77.4
Potri.001G055400 Populus trichocarpa HOM05D005988 ORTHO05D007392 2.4e-39 165.2 87 83.9
RcHm_v2.0_Chr4g0430261 Rosa chinensis HOM05D005988 ORTHO05D007392 4.0e-39 164.5 93 79.6
Sed0026530 Sechium edule HOM05D005988 ORTHO05D007392 4.0e-39 164.5 84 86.9
Gohir.D02G149200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 5.3e-39 164.1 93 76.3
Gorai.005G167100 Gossypium raimondii HOM05D005988 ORTHO05D007392 5.3e-39 164.1 93 76.3
Potri.003G173000 Populus trichocarpa HOM05D005988 ORTHO05D007392 5.3e-39 164.1 87 83.9
MD16G1119100 Malus domestica HOM05D005988 ORTHO05D007392 6.9e-39 163.7 89 83.1
Sabra01G0040000 Salix brachista HOM05D005988 ORTHO05D007392 6.9e-39 163.7 87 82.8
Sabra03G0126500 Salix brachista HOM05D005988 ORTHO05D007392 6.9e-39 163.7 87 82.8
MELO3C011867.2 Cucumis melo HOM05D005988 ORTHO05D007392 9.0e-39 163.3 90 80.0
DCAR_031202 Daucus carota HOM05D005988 ORTHO05D007392 1.2e-38 162.9 91 75.8
Atru.chr11.2323 Acer truncatum HOM05D005988 ORTHO05D007392 2.0e-38 162.2 91 76.9
COL.COLO4_20400 Corchorus olitorius HOM05D005988 ORTHO05D007392 2.0e-38 162.2 94 75.5
Glyma.05G147302 Glycine max HOM05D005988 ORTHO05D007392 3.4e-38 161.4 94 78.7
Glyma.08G104300 Glycine max HOM05D005988 ORTHO05D007392 5.8e-38 160.6 94 77.7
ECA233G0411 Erigeron canadensis HOM05D005988 ORTHO05D007392 9.9e-38 159.8 91 75.8
Aqoxy3G00796 Aquilegia oxysepala HOM05D005988 ORTHO05D007392 1.3e-37 159.5 84 84.5
CsaV3_5G030290 Cucumis sativus L. HOM05D005988 ORTHO05D007392 1.3e-37 159.5 84 79.8
Ca_18034_v3 Cicer arietinum L. HOM05D005988 ORTHO05D007392 1.7e-37 159.1 84 83.3
Lalb_Chr07g0187141 Lupinus albus HOM05D005988 ORTHO05D007392 1.7e-37 159.1 93 74.2
Nitab4.5_0006506g0010 Nicotiana tabacum HOM05D005988 ORTHO05D007392 1.7e-37 159.1 84 81.0
Phvul.L002046 Phaseolus vulgaris HOM05D005988 ORTHO05D007392 1.7e-37 159.1 84 83.3
arahy.Tifrunner.gnm1.ann1.5IUK3V Arachis hypogaea HOM05D005988 ORTHO05D007392 2.2e-37 158.7 85 82.4
arahy.Tifrunner.gnm1.ann1.CH2TLP Arachis hypogaea HOM05D005988 ORTHO05D007392 2.2e-37 158.7 85 82.4
arahy.Tifrunner.gnm1.ann1.NCU5C9 Arachis hypogaea HOM05D005988 ORTHO05D007392 2.2e-37 158.7 85 82.4
Rhsim12G0099600 Rhododendron simsii HOM05D005988 ORTHO05D007392 2.2e-37 158.7 84 81.0
Nitab4.5_0005361g0020 Nicotiana tabacum HOM05D005988 ORTHO05D007392 3.8e-37 157.9 84 79.8
FvH4_4g23770 Fragaria vesca HOM05D005988 ORTHO05D007392 4.9e-37 157.5 88 78.4
FAN07G1208 Fragaria x ananassa HOM05D005988 ORTHO05D007392 4.9e-37 157.5 88 78.4
FAN12G0190 Fragaria x ananassa HOM05D005988 ORTHO05D007392 4.9e-37 157.5 88 78.4
FAN17G2984 Fragaria x ananassa HOM05D005988 ORTHO05D007392 4.9e-37 157.5 88 78.4
Hund13388 Selenicereus undatus HOM05D005988 ORTHO05D007392 4.9e-37 157.5 85 80.0
TPR.G17077 Trifolium pratense HOM05D005988 ORTHO05D007392 4.9e-37 157.5 94 76.6
TPR.G34164 Trifolium pratense HOM05D005988 ORTHO05D007392 4.9e-37 157.5 94 76.6
Lalb_Chr13g0294321 Lupinus albus HOM05D005988 ORTHO05D007392 6.4e-37 157.1 93 74.2
GSVIVG01010482001 Vitis vinifera HOM05D005988 ORTHO05D007392 6.4e-37 157.1 87 79.3
Psat0s2314g0040 Pisum sativum HOM05D005988 ORTHO05D007392 8.4e-37 156.8 84 81.0
arahy.Tifrunner.gnm1.ann1.XY4E2W Arachis hypogaea HOM05D005988 ORTHO05D007392 1.9e-36 155.6 85 80.0
Duzib251G0426 Durio zibethinus HOM05D005988 ORTHO05D007392 1.9e-36 155.6 93 74.2
Duzib251G0424 Durio zibethinus HOM05D005988 ORTHO05D007392 2.4e-36 155.2 93 73.1
Lj4g0004056 Lotus japonicus HOM05D005988 ORTHO05D007392 2.4e-36 155.2 94 75.5
THA.LOC109117182 Tarenaya hassleriana HOM05D005988 ORTHO05D007392 4.2e-36 154.5 84 79.8
ATR0582G290 Amborella trichopoda HOM05D005988 ORTHO05D007392 5.4e-36 154.1 83 80.7
EL10Ac2g02768 Beta vulgaris HOM05D005988 ORTHO05D007392 5.4e-36 154.1 85 76.5
Medtr8g080630 Medicago truncatula HOM05D005988 ORTHO05D007392 1.2e-35 152.9 83 79.5
PGSC0003DMG400017679 Solanum tuberosum HOM05D005988 ORTHO05D007392 1.2e-35 152.9 84 79.8
FAN22G1192 Fragaria x ananassa HOM05D005988 ORTHO05D007392 2.1e-35 152.1 84 79.8
CAN.G875.9 Capsicum annuum HOM05D005988 ORTHO05D007392 4.6e-35 151.0 83 79.5
HanXRQChr12g0372221 Helianthus annuus HOM05D005988 ORTHO05D007392 4.6e-35 151.0 80 82.5
AUR62034347 Chenopodium quinoa HOM05D005988 ORTHO05D007392 6.0e-35 150.6 84 75.0
Solyc04g045620.3 Solanum lycopersicum HOM05D005988 ORTHO05D007392 6.0e-35 150.6 83 78.3
Sopen04g017580 Solanum pennellii HOM05D005988 ORTHO05D007392 6.0e-35 150.6 83 78.3
Sc15g0005560 Simmondsia chinensis HOM05D005988 ORTHO05D007392 7.9e-35 150.2 85 75.3
Sc15g0005760 Simmondsia chinensis HOM05D005988 ORTHO05D007392 7.9e-35 150.2 85 75.3
CARHR059890 Cardamine hirsuta HOM05D005988 ORTHO05D007392 1.3e-34 149.4 92 73.9
Aa31sc377G10 Aethionema arabicum HOM05D005988 ORTHO05D007392 1.8e-34 149.1 87 74.7
AL2G25900 Arabidopsis lyrata HOM05D005988 ORTHO05D007392 3.0e-34 148.3 92 72.8
AT1G67350 Arabidopsis thaliana HOM05D005988 ORTHO05D007392 3.0e-34 148.3 92 72.8
AUR62022358 Chenopodium quinoa HOM05D005988 ORTHO05D007392 3.0e-34 148.3 83 74.7
MD13G1118900 Malus domestica HOM05D005988 ORTHO05D007392 3.0e-34 148.3 77 85.7
Actinidia08072 Actinidia chinensis HOM05D005988 ORTHO05D007392 5.1e-34 147.5 94 71.3
BcaB03g15204 Brassica carinata HOM05D005988 ORTHO05D007392 5.1e-34 147.5 91 70.3
Carub.0002s1364 Capsella rubella HOM05D005988 ORTHO05D007392 5.1e-34 147.5 92 72.8
Nitab4.5_0000060g0090 Nicotiana tabacum HOM05D005988 ORTHO05D007392 5.1e-34 147.5 80 81.2
Ah.10g030080 Amaranthus hybridus HOM05D005988 ORTHO05D007392 6.7e-34 147.1 79 78.5
QL03p052764 Quercus lobata HOM05D005988 ORTHO05D007392 1.1e-33 146.4 85 76.5
BcaB05g24271 Brassica carinata HOM05D005988 ORTHO05D007392 1.5e-33 146.0 84 76.2
BcaB05g24277 Brassica carinata HOM05D005988 ORTHO05D007392 1.5e-33 146.0 84 76.2
BcaC08g46168 Brassica carinata HOM05D005988 ORTHO05D007392 1.5e-33 146.0 84 76.2
C06p42910 Brassica napus HOM05D005988 ORTHO05D007392 1.5e-33 146.0 84 76.2
Peaxi162Scf00038g00014 Petunia axillaris HOM05D005988 ORTHO05D007392 1.5e-33 146.0 91 70.3
A07p33950 Brassica napus HOM05D005988 ORTHO05D007392 3.3e-33 144.8 84 75.0
Thhalv10019308m.g Eutrema salsugineum HOM05D005988 ORTHO05D007392 3.3e-33 144.8 84 75.0
Sp5g22300 Schrenkiella parvula HOM05D005988 ORTHO05D007392 3.3e-33 144.8 84 75.0
BcaC03g14837 Brassica carinata HOM05D005988 ORTHO05D007392 4.3e-33 144.4 84 75.0
A02p14180 Brassica napus HOM05D005988 ORTHO05D007392 4.3e-33 144.4 84 75.0
C02p22980 Brassica napus HOM05D005988 ORTHO05D007392 4.3e-33 144.4 84 75.0
BraA02t06481Z Brassica rapa HOM05D005988 ORTHO05D007392 4.3e-33 144.4 84 75.0
HPP92_012485 Vanilla planifolia HOM05D005988 ORTHO05D007392 7.4e-33 143.7 93 73.1
DCAR_024095 Daucus carota HOM05D005988 ORTHO05D007392 3.1e-31 138.3 89 68.5
Migut.E00018 Erythranthe guttata HOM05D005988 ORTHO05D007392 1.2e-30 136.3 84 72.6
Os03g0685900 Oryza sativa ssp. japonica HOM05D005988 ORTHO05D007392 1.2e-30 136.3 92 67.4
SalBow8G0976 Salvia bowleyana HOM05D005988 ORTHO05D007392 3.4e-30 134.8 85 67.1
unitig_62.g23652 Utricularia gibba HOM05D005988 ORTHO05D007392 1.7e-29 132.5 85 67.1
SGA_v2.0_scaffold144G35838 Striga asiatica HOM05D005988 ORTHO05D007392 6.4e-29 130.6 73 74.0
Zm00001eb290200 Zea mays HOM05D005988 ORTHO05D007392 6.4e-29 130.6 83 68.7
Zm00001eb422590 Zea mays HOM05D005988 ORTHO05D007392 8.4e-29 130.2 83 67.5
TWI75G1041 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 3.2e-28 128.3 91 63.7
Lsat_1_v5_gn_7_95720 Lactuca sativa HOM05D005988 ORTHO05D007392 1.2e-27 126.3 69 73.9
Lalb_Chr23g0278031 Lupinus albus HOM05D005988 ORTHO05D007392 1.0e-26 123.2 84 67.9
Lalb_Chr23g0278041 Lupinus albus HOM05D005988 ORTHO05D007392 1.8e-26 122.5 84 67.9
TWI18G1296 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 5.1e-26 120.9 91 58.2
CBR_g8533 Chara braunii HOM05D005988 ORTHO05D007392 4.5e-22 107.8 84 51.2
Migut.G00897 Erythranthe guttata HOM05D005988 ORTHO05D007392 4.5e-22 107.8 70 67.1
Migut.O00848 Erythranthe guttata HOM05D005988 ORTHO05D007392 4.5e-22 107.8 70 67.1
Pp3c3_5450 Physcomitrium patens HOM05D005988 ORTHO05D007392 4.2e-20 101.3 82 51.2
Mapoly0011s0010 Marchantia polymorpha HOM05D005988 ORTHO05D007392 9.3e-20 100.1 87 52.9
Nitab4.5_0001404g0080 Nicotiana tabacum HOM05D005988 ORTHO05D007392 2.3e-18 95.5 52 73.1
TAR629G1917 Trochodendron aralioides HOM05D000133 ORTHO05D002928 2.2e-16 89.0 42 88.1
AagrBONN_evm.TU.Sc2ySwM_117.535 Anthoceros agrestis HOM05D005988 ORTHO05D007392 4.8e-16 87.8 78 47.4
SMO356G0160 Selaginella moellendorffii HOM05D005988 ORTHO05D007392 6.3e-16 87.4 80 45.0
Actinidia30649 Actinidia chinensis HOM05D005988 ORTHO05D007392 9.7e-09 63.5 41 70.7
arahy.Tifrunner.gnm1.ann1.BFR0IC Arachis hypogaea HOM05D005988 ORTHO05D007392 3.7e-08 61.6 56 51.8
BcaB05g24274 Brassica carinata HOM05D005988 ORTHO05D007392 3.7e-08 61.6 84 41.7


User provided reference genes

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