Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22311 Nelumbo nucifera HOM05D005335 ORTHO05D006472 3.2e-63 245.4 167 100.0
Nn3g16458 Nelumbo nucifera HOM05D005335 ORTHO05D006472 2.5e-44 182.6 171 60.8
TAR371G0199 Trochodendron aralioides HOM05D005335 ORTHO05D006472 4.8e-35 151.8 166 66.3
CiPaw.11G007000 Carya illinoinensis HOM05D005335 ORTHO05D006472 4.5e-33 145.2 174 71.8
TAR629G1091 Trochodendron aralioides HOM05D005335 ORTHO05D006472 7.7e-33 144.4 168 70.8
Duzib205G0334 Durio zibethinus HOM05D005335 ORTHO05D006472 1.1e-31 140.6 173 63.6
Cfa018794 Carpinus fangiana HOM05D005335 ORTHO05D006472 4.2e-31 138.7 173 72.3
Haze_07140 Corylus avellana HOM05D005335 ORTHO05D006472 5.5e-31 138.3 170 71.2
Thecc.03G129400 Theobroma cacao HOM05D005335 ORTHO05D006472 7.2e-31 137.9 171 64.9
QL10p002879 Quercus lobata HOM05D005335 ORTHO05D006472 1.2e-30 137.1 183 57.9
Duzib084G1383 Durio zibethinus HOM05D005335 ORTHO05D006472 1.8e-29 133.3 174 49.4
CAN.G1305.23 Capsicum annuum HOM05D005335 ORTHO05D006472 3.7e-27 125.6 172 62.2
Hma1.2p1_0014F.1_g009400 Hydrangea macrophylla HOM05D005335 ORTHO05D006472 4.8e-27 125.2 174 63.2
Oeu023482.1 Olea europaea HOM05D005335 ORTHO05D006472 1.1e-26 124.0 169 62.1
MSTRG.11283 Avicennia marina HOM05D005335 ORTHO05D006472 1.4e-26 123.6 167 57.5
Potri.012G097901 Populus trichocarpa HOM05D005335 ORTHO05D006472 1.4e-26 123.6 179 62.0
COL.COLO4_28131 Corchorus olitorius HOM05D005335 ORTHO05D006472 4.1e-26 122.1 176 61.9
Potri.015G096500 Populus trichocarpa HOM05D005335 ORTHO05D006472 5.3e-26 121.7 176 63.6
MELO3C026206.2 Cucumis melo HOM05D005335 ORTHO05D006472 2.0e-25 119.8 173 66.5
TWI39G0987 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 2.6e-25 119.4 174 69.0
Manes.06G119800 Manihot esculenta HOM05D005335 ORTHO05D006472 3.4e-25 119.0 176 64.8
Atru.chr6.1795 Acer truncatum HOM05D005335 ORTHO05D006472 4.5e-25 118.6 173 63.0
ClCG06G017900 Citrullus lanatus HOM05D005335 ORTHO05D006472 4.5e-25 118.6 174 66.7
Sabra15G0117300 Salix brachista HOM05D005335 ORTHO05D006472 5.9e-25 118.2 175 61.1
PGR044G0086 Punica granatum HOM05D005335 ORTHO05D006472 1.0e-24 117.5 169 55.6
Cpa.g.sc13.114 Carica papaya HOM05D005335 ORTHO05D006472 1.7e-24 116.7 178 63.5
Dinv11173 Davidia involucrata HOM05D001420 ORTHO05D002488 2.2e-24 116.3 168 55.4
Rhsim08G0190300 Rhododendron simsii HOM05D005335 ORTHO05D006472 3.8e-24 115.5 175 54.3
RcHm_v2.0_Chr7g0190101 Rosa chinensis HOM05D005335 ORTHO05D006472 8.5e-24 114.4 169 65.7
Sabra12G0071600 Salix brachista HOM05D005335 ORTHO05D006472 8.5e-24 114.4 164 62.2
Lsat_1_v5_gn_4_80981 Lactuca sativa HOM05D005335 ORTHO05D006472 1.1e-23 114.0 171 60.2
CSS0038536 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 1.4e-23 113.6 170 49.4
Cc04_g09930 Coffea canephora HOM05D005335 ORTHO05D006472 3.2e-23 112.5 174 60.9
Oeu045458.1 Olea europaea HOM05D005335 ORTHO05D006472 3.2e-23 112.5 169 62.1
Oeu045459.1 Olea europaea HOM05D005335 ORTHO05D006472 3.2e-23 112.5 169 62.1
Ciclev10032959m.g Citrus clementina HOM05D005335 ORTHO05D006472 4.2e-23 112.1 171 64.9
FAN04G0838 Fragaria x ananassa HOM05D005335 ORTHO05D006472 7.2e-23 111.3 177 64.4
CsaV3_1G000550 Cucumis sativus L. HOM05D005335 ORTHO05D006472 1.2e-22 110.5 176 65.9
Sopen03g032000 Solanum pennellii HOM05D005335 ORTHO05D006472 1.2e-22 110.5 175 59.4
Aqoxy5G03368 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 2.1e-22 109.8 171 54.4
Gohir.D09G247500 Gossypium hirsutum HOM05D005335 ORTHO05D006472 2.7e-22 109.4 172 45.3
MD06G1141500 Malus domestica HOM05D005335 ORTHO05D006472 2.7e-22 109.4 173 65.3
Aqoxy3G00598 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 4.7e-22 108.6 163 59.5
FAN08G1274 Fragaria x ananassa HOM05D005335 ORTHO05D006472 4.7e-22 108.6 177 63.8
Solyc03g112920.1 Solanum lycopersicum HOM05D005335 ORTHO05D006472 4.7e-22 108.6 175 58.9
PGSC0003DMG400018091 Solanum tuberosum HOM05D005335 ORTHO05D006472 4.7e-22 108.6 172 59.9
CSS0021703 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 6.1e-22 108.2 169 43.8
Gorai.006G272000 Gossypium raimondii HOM05D005335 ORTHO05D006472 6.1e-22 108.2 172 44.8
Nitab4.5_0000514g0170 Nicotiana tabacum HOM05D005335 ORTHO05D006472 6.1e-22 108.2 167 61.7
Nitab4.5_0002403g0010 Nicotiana tabacum HOM05D005335 ORTHO05D006472 8.0e-22 107.8 174 60.9
vmacro19206 Vaccinium macrocarpon HOM05D005335 ORTHO05D006472 8.0e-22 107.8 177 53.1
Gohir.A09G247000 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.4e-21 107.1 172 50.0
Dinv23148 Davidia involucrata HOM05D005335 ORTHO05D006472 3.0e-21 105.9 112 58.9
FAN18G1337 Fragaria x ananassa HOM05D005335 ORTHO05D006472 3.0e-21 105.9 172 64.5
DCAR_016388 Daucus carota HOM05D005335 ORTHO05D006472 3.9e-21 105.5 175 56.0
Oeu005014.1 Olea europaea HOM05D005335 ORTHO05D006472 3.9e-21 105.5 166 55.4
FAN13G0785 Fragaria x ananassa HOM05D005335 ORTHO05D006472 5.2e-21 105.1 176 55.1
Gohir.D08G258700 Gossypium hirsutum HOM05D005335 ORTHO05D006472 6.7e-21 104.8 172 43.0
Gorai.009G431200 Gossypium raimondii HOM05D005335 ORTHO05D006472 8.8e-21 104.4 169 40.8
FvH4_5g08350 Fragaria vesca HOM05D005335 ORTHO05D006472 1.1e-20 104.0 172 64.0
Gohir.D05G361600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.5e-20 103.6 169 40.8
Actinidia36728 Actinidia chinensis HOM05D005335 ORTHO05D006472 2.0e-20 103.2 139 46.0
PSO017G0745 Papaver somniferum HOM05D005335 ORTHO05D006472 2.0e-20 103.2 184 51.1
PSO478G2775 Papaver somniferum HOM05D005335 ORTHO05D006472 2.0e-20 103.2 184 56.5
HanXRQChr16g0498141 Helianthus annuus HOM05D005335 ORTHO05D006472 2.6e-20 102.8 172 57.6
MD14G1156700 Malus domestica HOM05D005335 ORTHO05D006472 2.6e-20 102.8 177 61.6
HanXRQChr09g0273241 Helianthus annuus HOM05D005335 ORTHO05D006472 3.3e-20 102.4 166 59.0
CiPaw.12G043300 Carya illinoinensis HOM05D005335 ORTHO05D006472 1.3e-19 100.5 160 56.2
VMungo1215G0398 Vigna mungo HOM05D005335 ORTHO05D006472 2.2e-19 99.8 171 62.0
Gohir.A04G026600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 2.8e-19 99.4 134 49.3
Gorai.004G276200 Gossypium raimondii HOM05D005335 ORTHO05D006472 2.8e-19 99.4 168 43.5
Prupe.5G150800 Prunus persica HOM05D005335 ORTHO05D006472 3.7e-19 99.0 155 67.7
Gohir.D07G055600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 4.8e-19 98.6 170 60.0
Gorai.001G058900 Gossypium raimondii HOM05D005335 ORTHO05D006472 4.8e-19 98.6 170 60.0
Gohir.A07G051200 Gossypium hirsutum HOM05D005335 ORTHO05D006472 6.3e-19 98.2 170 59.4
Sed0012251 Sechium edule HOM05D005335 ORTHO05D006472 8.2e-19 97.8 163 62.0
A01p25690 Brassica napus HOM05D005335 ORTHO05D006472 1.1e-18 97.4 170 41.8
BraA01t02445Z Brassica rapa HOM05D005335 ORTHO05D006472 1.1e-18 97.4 170 41.8
TWI23G0456 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 1.1e-18 97.4 173 63.0
Glyma.05G048500 Glycine max HOM05D005335 ORTHO05D006472 1.4e-18 97.1 167 61.7
Actinidia25571 Actinidia chinensis HOM05D005335 ORTHO05D006472 2.4e-18 96.3 110 57.3
BolC1t03128H Brassica oleracea HOM05D005335 ORTHO05D006472 2.4e-18 96.3 170 41.8
Peaxi162Scf00009g00007 Petunia axillaris HOM05D005335 ORTHO05D006472 2.4e-18 96.3 165 57.0
Sed0021893 Sechium edule HOM05D005335 ORTHO05D006472 3.1e-18 95.9 166 53.0
Lalb_Chr07g0183461 Lupinus albus HOM05D005335 ORTHO05D006472 5.3e-18 95.1 166 62.0
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 5.3e-18 95.1 161 58.4
Glyma.17G130400 Glycine max HOM05D005335 ORTHO05D006472 9.1e-18 94.4 168 60.1
BcaC09g49876 Brassica carinata HOM05D005335 ORTHO05D006472 1.2e-17 94.0 170 60.0
Psat4g066680 Pisum sativum HOM05D005335 ORTHO05D006472 1.2e-17 94.0 166 61.4
Manes.14G051200 Manihot esculenta HOM05D005335 ORTHO05D006472 2.0e-17 93.2 168 61.9
Rhsim12G0175000 Rhododendron simsii HOM05D005335 ORTHO05D006472 2.0e-17 93.2 170 48.8
Migut.I00507 Erythranthe guttata HOM05D005335 ORTHO05D006472 4.5e-17 92.0 189 53.4
Medtr4g103250 Medicago truncatula HOM05D005335 ORTHO05D006472 5.9e-17 91.7 166 62.0
TPR.G19227 Trifolium pratense HOM05D005335 ORTHO05D006472 5.9e-17 91.7 166 59.6
BcaB05g23008 Brassica carinata HOM05D005335 ORTHO05D006472 1.0e-16 90.9 170 41.8
Ca_26102_v3 Cicer arietinum L. HOM05D005335 ORTHO05D006472 1.3e-16 90.5 124 72.6
GSVIVG01008545001 Vitis vinifera HOM05D005335 ORTHO05D006472 1.3e-16 90.5 89 93.3
Lalb_Chr13g0297231 Lupinus albus HOM05D005335 ORTHO05D006472 2.2e-16 89.7 166 48.8
Lj4g0005056 Lotus japonicus HOM05D005335 ORTHO05D006472 3.8e-16 89.0 166 44.6
Oeu030248.1 Olea europaea HOM05D005335 ORTHO05D006472 6.5e-16 88.2 163 54.6
Thhalv10010777m.g Eutrema salsugineum HOM05D005335 ORTHO05D006472 1.5e-15 87.0 122 45.9
PSO478G4723 Papaver somniferum HOM05D005335 ORTHO05D006472 1.5e-15 87.0 134 58.2
Sc04g0000630 Simmondsia chinensis HOM05D005335 ORTHO05D006472 1.9e-15 86.7 153 41.8
PSO017G4217 Papaver somniferum HOM05D005335 ORTHO05D006472 3.2e-15 85.9 134 59.7
A06p19120 Brassica napus HOM05D005335 ORTHO05D006472 4.2e-15 85.5 169 40.2
BraA06t24996Z Brassica rapa HOM05D005335 ORTHO05D006472 4.2e-15 85.5 169 40.2
EL10Ac5g11411 Beta vulgaris HOM05D005335 ORTHO05D006472 9.4e-15 84.3 129 44.2
AL5G28000 Arabidopsis lyrata HOM05D005335 ORTHO05D006472 2.7e-14 82.8 174 37.9
BcaC07g39341 Brassica carinata HOM05D005335 ORTHO05D006472 4.7e-14 82.0 164 39.0
C08p23580 Brassica napus HOM05D005335 ORTHO05D006472 4.7e-14 82.0 164 39.0
BolC8t49988H Brassica oleracea HOM05D005335 ORTHO05D006472 4.7e-14 82.0 164 39.0
AT3G48550 Arabidopsis thaliana HOM05D005335 ORTHO05D006472 6.1e-14 81.6 175 37.7
Carub.0005s1474 Capsella rubella HOM05D005335 ORTHO05D006472 6.1e-14 81.6 170 38.8
Sp5g13430 Schrenkiella parvula HOM05D005335 ORTHO05D006472 6.1e-14 81.6 122 44.3
Ah.11g045430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 1.4e-13 80.5 125 41.6
Migut.D01260 Erythranthe guttata HOM05D005335 ORTHO05D006472 2.3e-13 79.7 178 50.6
THA.LOC104818185 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 4.0e-13 79.0 164 54.3
Actinidia08873 Actinidia chinensis HOM05D001420 ORTHO05D002488 1.2e-12 77.4 162 37.7
THA.LOC104821517 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 1.2e-12 77.4 167 55.1
Aa31LG4G17170 Aethionema arabicum HOM05D005335 ORTHO05D006472 5.7e-12 75.1 87 49.4
C01p32260 Brassica napus HOM05D005335 ORTHO05D006472 5.7e-12 75.1 170 57.6
AUR62029609 Chenopodium quinoa HOM05D005335 ORTHO05D006472 9.7e-12 74.3 122 43.4
BcaB01g00799 Brassica carinata HOM05D005335 ORTHO05D006472 3.7e-11 72.4 171 38.6
DCAR_007490 Daucus carota HOM05D005335 ORTHO05D006472 3.7e-11 72.4 169 36.1
Ah.04g153430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 4.8e-11 72.0 124 42.7
AUR62034828 Chenopodium quinoa HOM05D005335 ORTHO05D006472 4.8e-11 72.0 123 42.3
unitig_744.g24466 Utricularia gibba HOM05D005335 ORTHO05D006472 6.3e-11 71.6 111 45.9
CANSAT80G0357 Cannabis sativa HOM05D005335 ORTHO05D006472 1.1e-10 70.9 247 39.7
CARHR157350 Cardamine hirsuta HOM05D005335 ORTHO05D006472 1.6e-09 67.0 116 46.6
SGA_v2.0_scaffold161G37793 Striga asiatica HOM05D005335 ORTHO05D006472 2.0e-09 66.6 124 38.7
SGA_v2.0_scaffold5G02870 Striga asiatica HOM05D005335 ORTHO05D006472 2.0e-09 66.6 163 48.5
HPP92_009722 Vanilla planifolia HOM05D005335 ORTHO05D006472 2.0e-09 66.6 168 33.9
HanXRQChr05g0155191 Helianthus annuus HOM05D005335 ORTHO05D006472 2.7e-09 66.2 168 53.0
ECA246G0037 Erigeron canadensis HOM05D005335 ORTHO05D006472 6.5e-08 61.6 170 45.9
THA.LOC104798946 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 9.4e-07 57.8 168 45.8


User provided reference genes

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