Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22293 Nelumbo nucifera HOM05D007115 ORTHO05D008923 1.5e-89 332.8 165 100.0
Actinidia25565 Actinidia chinensis HOM05D007115 ORTHO05D008923 3.9e-61 238.4 137 81.8
Duzib205G1497 Durio zibethinus HOM05D007115 ORTHO05D008923 4.3e-60 235.0 137 81.8
Rhsim08G0191000 Rhododendron simsii HOM05D007115 ORTHO05D008923 5.6e-60 234.6 136 78.7
Haze_07151 Corylus avellana HOM05D007115 ORTHO05D008923 7.3e-60 234.2 137 81.8
Glyma.06G169300 Glycine max HOM05D007115 ORTHO05D008923 7.3e-60 234.2 136 80.1
Hma1.2p1_0014F.1_g009320 Hydrangea macrophylla HOM05D007115 ORTHO05D008923 7.3e-60 234.2 137 81.0
Sc04g0000560 Simmondsia chinensis HOM05D007115 ORTHO05D008923 9.5e-60 233.8 152 77.6
Oeu004998.1 Olea europaea HOM05D007115 ORTHO05D008923 1.2e-59 233.4 137 79.6
TAR622G0416 Trochodendron aralioides HOM05D007115 ORTHO05D008923 1.6e-59 233.0 137 78.8
CiPaw.12G043900 Carya illinoinensis HOM05D007115 ORTHO05D008923 2.1e-59 232.6 137 81.8
VMungo1309G2111 Vigna mungo HOM05D007115 ORTHO05D008923 2.8e-59 232.3 137 79.6
Phvul.009G165800 Phaseolus vulgaris HOM05D007115 ORTHO05D008923 3.6e-59 231.9 137 80.3
Lj5A95G76 Lonicera japonica HOM05D007115 ORTHO05D008923 6.2e-59 231.1 152 75.0
Hund02448 Selenicereus undatus HOM05D007115 ORTHO05D008923 6.2e-59 231.1 152 74.3
GSVIVG01008566001 Vitis vinifera HOM05D007115 ORTHO05D008923 6.2e-59 231.1 137 81.0
Dinv23157 Davidia involucrata HOM05D007115 ORTHO05D008923 1.0e-58 230.3 137 81.8
Cfa018785 Carpinus fangiana HOM05D007115 ORTHO05D008923 1.4e-58 229.9 137 81.0
Glyma.04G196500 Glycine max HOM05D007115 ORTHO05D008923 1.4e-58 229.9 136 78.7
Thecc.03G130400 Theobroma cacao HOM05D007115 ORTHO05D008923 2.3e-58 229.2 137 79.6
Atru.chr6.1807 Acer truncatum HOM05D007115 ORTHO05D008923 4.0e-58 228.4 137 79.6
CSS0028892 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 6.8e-58 227.6 137 78.8
TPR.G14207 Trifolium pratense HOM05D007115 ORTHO05D008923 8.9e-58 227.3 137 77.4
Cpa.g.sc13.101 Carica papaya HOM05D007115 ORTHO05D008923 1.5e-57 226.5 137 76.6
Medtr3g099140 Medicago truncatula HOM05D007115 ORTHO05D008923 1.5e-57 226.5 137 77.4
CSS0028949 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 2.0e-57 226.1 137 77.4
Manes.14G050500 Manihot esculenta HOM05D007115 ORTHO05D008923 2.0e-57 226.1 152 75.7
EL10Ac5g11401 Beta vulgaris HOM05D007115 ORTHO05D008923 2.6e-57 225.7 153 72.5
PGR083G2674 Punica granatum HOM05D007115 ORTHO05D008923 2.6e-57 225.7 152 74.3
ATR0790G002 Amborella trichopoda HOM05D007115 ORTHO05D008923 4.4e-57 224.9 137 78.8
Prupe.5G150000 Prunus persica HOM05D007115 ORTHO05D008923 5.8e-57 224.6 138 76.8
TWI39G0929 Tripterygium wilfordii HOM05D007115 ORTHO05D008923 5.8e-57 224.6 137 77.4
Potri.015G097700 Populus trichocarpa HOM05D007115 ORTHO05D008923 7.5e-57 224.2 137 77.4
vmacro19121 Vaccinium macrocarpon HOM05D007115 ORTHO05D008923 7.5e-57 224.2 136 76.5
Ca_16052_v3 Cicer arietinum L. HOM05D007115 ORTHO05D008923 9.8e-57 223.8 137 78.8
Sabra15G0118300 Salix brachista HOM05D007115 ORTHO05D008923 9.8e-57 223.8 137 77.4
Aqoxy5G03328 Aquilegia oxysepala HOM05D007115 ORTHO05D008923 1.3e-56 223.4 136 79.4
CANSAT80G2203 Cannabis sativa HOM05D007115 ORTHO05D008923 1.3e-56 223.4 137 77.4
Nitab4.5_0000624g0110 Nicotiana tabacum HOM05D007115 ORTHO05D008923 1.3e-56 223.4 137 76.6
Eucgr.B00101 Eucalyptus grandis HOM05D007115 ORTHO05D008923 2.9e-56 222.2 152 73.7
Lj1g0010129 Lotus japonicus HOM05D007115 ORTHO05D008923 2.9e-56 222.2 137 77.4
MD06G1140800 Malus domestica HOM05D007115 ORTHO05D008923 4.9e-56 221.5 137 74.5
Nitab4.5_0001311g0160 Nicotiana tabacum HOM05D007115 ORTHO05D008923 4.9e-56 221.5 137 75.9
Ciclev10032623m.g Citrus clementina HOM05D007115 ORTHO05D008923 6.4e-56 221.1 137 78.1
AUR62034838 Chenopodium quinoa HOM05D007115 ORTHO05D008923 8.3e-56 220.7 152 71.1
ECA247G2755 Erigeron canadensis HOM05D001512 ORTHO05D001574 4.1e-55 218.4 137 72.3
HanXRQChr02g0034681 Helianthus annuus HOM05D007115 ORTHO05D008923 5.4e-55 218.0 137 74.5
RcHm_v2.0_Chr7g0190021 Rosa chinensis HOM05D007115 ORTHO05D008923 1.2e-54 216.9 134 76.1
FvH4_5g08420 Fragaria vesca HOM05D007115 ORTHO05D008923 1.6e-54 216.5 134 75.4
FAN04G1902 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.6e-54 216.5 134 75.4
FAN13G1038 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.6e-54 216.5 134 75.4
CAN.G1611.7 Capsicum annuum HOM05D007115 ORTHO05D008923 2.0e-54 216.1 137 75.2
Lalb_Chr11g0069511 Lupinus albus HOM05D007115 ORTHO05D008923 2.0e-54 216.1 137 74.5
PGSC0003DMG400015264 Solanum tuberosum HOM05D007115 ORTHO05D008923 2.7e-54 215.7 153 71.9
Lsat_1_v5_gn_1_33120 Lactuca sativa HOM05D007115 ORTHO05D008923 3.5e-54 215.3 137 71.5
Sopen03g029960 Solanum pennellii HOM05D007115 ORTHO05D008923 3.5e-54 215.3 137 75.2
Peaxi162Scf00089g00121 Petunia axillaris HOM05D007115 ORTHO05D008923 7.8e-54 214.2 159 67.9
CDE02G1164 Ceratophyllum demersum HOM05D007115 ORTHO05D008923 1.0e-53 213.8 138 73.9
Solyc03g019660.4 Solanum lycopersicum HOM05D007115 ORTHO05D008923 1.0e-53 213.8 137 74.5
THA.LOC104811583 Tarenaya hassleriana HOM05D007115 ORTHO05D008923 3.0e-53 212.2 137 73.0
FAN08G1896 Fragaria x ananassa HOM05D007115 ORTHO05D008923 3.9e-53 211.8 134 73.9
MELO3C002367.2 Cucumis melo HOM05D007115 ORTHO05D008923 5.0e-53 211.5 136 74.3
ClCG03G003830 Citrullus lanatus HOM05D007115 ORTHO05D008923 6.6e-53 211.1 136 73.5
CsaV3_1G009730 Cucumis sativus L. HOM05D007115 ORTHO05D008923 8.6e-53 210.7 136 73.5
FAN18G3505 Fragaria x ananassa HOM05D007115 ORTHO05D008923 8.6e-53 210.7 134 74.6
QL10p002688 Quercus lobata HOM05D007115 ORTHO05D008923 1.9e-52 209.5 187 59.4
MSTRG.11273 Avicennia marina HOM05D007115 ORTHO05D008923 3.3e-52 208.8 138 71.0
Migut.I00540 Erythranthe guttata HOM05D007115 ORTHO05D008923 2.8e-51 205.7 140 72.1
Gohir.A11G036350 Gossypium hirsutum HOM05D007115 ORTHO05D008923 1.1e-50 203.8 126 77.0
SGA_v2.0_scaffold258G45802 Striga asiatica HOM05D007115 ORTHO05D008923 1.1e-50 203.8 139 70.5
unitig_8.g3030 Utricularia gibba HOM05D007115 ORTHO05D008923 4.0e-50 201.8 137 69.3
HPP92_023120 Vanilla planifolia HOM05D007115 ORTHO05D008923 4.0e-50 201.8 183 56.3
Gohir.D11G039800 Gossypium hirsutum HOM05D007115 ORTHO05D008923 5.2e-50 201.4 126 77.0
Gorai.007G042800 Gossypium raimondii HOM05D007115 ORTHO05D008923 5.2e-50 201.4 126 76.2
BcaNung06011 Brassica carinata HOM05D007115 ORTHO05D008923 1.2e-49 200.3 134 68.7
DCAR_007496 Daucus carota HOM05D007115 ORTHO05D008923 1.2e-49 200.3 137 72.3
AT4G24930 Arabidopsis thaliana HOM05D007115 ORTHO05D008923 1.5e-49 199.9 137 68.6
BolC1t01950H Brassica oleracea HOM05D007115 ORTHO05D008923 1.5e-49 199.9 134 68.7
Cc04_g09720 Coffea canephora HOM05D007115 ORTHO05D008923 1.5e-49 199.9 138 69.6
C01p20210 Brassica napus HOM05D007115 ORTHO05D008923 2.0e-49 199.5 134 68.7
AL7G28270 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 2.6e-49 199.1 137 67.9
Thhalv10026135m.g Eutrema salsugineum HOM05D007115 ORTHO05D008923 7.5e-49 197.6 137 67.9
Aa31LG7G10860 Aethionema arabicum HOM05D007115 ORTHO05D008923 1.3e-48 196.8 142 65.5
A01p16220 Brassica napus HOM05D007115 ORTHO05D008923 1.3e-48 196.8 134 67.2
BraA01t01558Z Brassica rapa HOM05D007115 ORTHO05D008923 1.3e-48 196.8 134 67.2
Sp7g22910 Schrenkiella parvula HOM05D007115 ORTHO05D008923 3.7e-48 195.3 137 66.4
PSO017G0512 Papaver somniferum HOM05D007115 ORTHO05D008923 4.9e-48 194.9 127 74.8
Carub.0007s1613 Capsella rubella HOM05D007115 ORTHO05D008923 6.4e-48 194.5 137 65.7
CARHR232330 Cardamine hirsuta HOM05D007115 ORTHO05D008923 1.4e-47 193.4 137 66.4
SalBow5G3672 Salvia bowleyana HOM05D007115 ORTHO05D008923 1.9e-47 193.0 168 60.1
AUR62029602 Chenopodium quinoa HOM05D007115 ORTHO05D008923 1.6e-38 163.3 101 77.2
COL.COLO4_28141 Corchorus olitorius HOM05D007115 ORTHO05D008923 6.6e-37 157.9 101 75.2
Zm00001eb334110 Zea mays HOM05D007115 ORTHO05D008923 1.9e-36 156.4 132 61.4
arahy.Tifrunner.gnm1.ann1.YTW6SU Arachis hypogaea HOM05D007115 ORTHO05D008923 5.6e-36 154.8 135 60.0
Pp3c6_23090 Physcomitrium patens HOM05D007115 ORTHO05D008923 3.1e-34 149.1 140 52.9
Os01g0102300 Oryza sativa ssp. japonica HOM05D007115 ORTHO05D008923 6.9e-34 147.9 141 54.6
SMO356G0600 Selaginella moellendorffii HOM05D007115 ORTHO05D008923 8.1e-27 124.4 135 48.1
ATR0405G001 Amborella trichopoda HOM05D007115 ORTHO05D008923 6.0e-22 108.2 64 84.4
Actinidia18342 Actinidia chinensis HOM05D007115 ORTHO05D008923 1.0e-21 107.5 66 72.7
arahy.Tifrunner.gnm1.ann1.BUY811 Arachis hypogaea HOM05D007115 ORTHO05D008923 2.3e-21 106.3 62 77.4
MBI11_g41395_MAGBIO Magnolia biondii HOM05D007115 ORTHO05D008923 2.5e-20 102.8 62 74.2
Psat5g051920 Pisum sativum HOM05D007115 ORTHO05D008923 4.8e-19 98.6 61 68.9
FAN18G1815 Fragaria x ananassa HOM05D007115 ORTHO05D008923 7.9e-14 81.3 55 69.1
Sabra12G0072200 Salix brachista HOM05D007115 ORTHO05D008923 7.9e-14 81.3 62 67.7
FAN13G2062 Fragaria x ananassa HOM05D007115 ORTHO05D008923 6.7e-13 78.2 57 68.4
SEGI_00544 Sequoiadendron giganteum HOM05D007115 ORTHO05D008923 4.3e-12 75.5 63 55.6
Ah.02g114850 Amaranthus hybridus HOM05D007115 ORTHO05D008923 3.8e-08 62.4 45 53.3
FAN04G0070 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.9e-07 60.1 50 58.0
AL6G46780 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 4.6e-06 55.5 55 50.9


User provided reference genes

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