Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22252 Nelumbo nucifera HOM05D007269 ORTHO05D008531 1.6e-98 362.8 194 100.0
Nn3g16393 Nelumbo nucifera HOM05D007269 ORTHO05D008531 2.3e-49 199.5 210 57.1
Aqoxy3G01626 Aquilegia oxysepala HOM05D007269 ORTHO05D008531 3.2e-38 162.5 232 43.5
Potri.015G099800 Populus trichocarpa HOM05D007269 ORTHO05D008531 8.6e-36 154.5 208 45.2
Potri.001G059800 Populus trichocarpa HOM05D007269 ORTHO05D008531 4.3e-35 152.1 218 45.9
Aqoxy5G03286 Aquilegia oxysepala HOM05D007269 ORTHO05D008531 5.6e-35 151.8 207 46.4
TAR374G0918 Trochodendron aralioides HOM05D007269 ORTHO05D008531 1.1e-33 147.5 145 55.9
QL10p002347 Quercus lobata HOM05D007269 ORTHO05D008531 4.0e-33 145.6 191 46.1
Thecc.03G133000 Theobroma cacao HOM05D007269 ORTHO05D008531 2.9e-31 139.4 201 43.3
TAR622G0366 Trochodendron aralioides HOM05D007269 ORTHO05D008531 1.4e-30 137.1 176 50.6
Sabra15G0120500 Salix brachista HOM05D007269 ORTHO05D008531 1.9e-30 136.7 190 44.7
ATR0582G094 Amborella trichopoda HOM05D007269 ORTHO05D008531 1.2e-29 134.0 211 41.2
QL03p051584 Quercus lobata HOM05D007269 ORTHO05D008531 7.8e-29 131.3 240 39.6
Ciclev10032833m.g Citrus clementina HOM05D007269 ORTHO05D008531 1.3e-28 130.6 193 44.0
CiPaw.06G105600 Carya illinoinensis HOM05D007269 ORTHO05D008531 1.7e-28 130.2 241 38.2
Atru.chr6.1845 Acer truncatum HOM05D007269 ORTHO05D008531 2.3e-28 129.8 188 44.1
Manes.13G008500 Manihot esculenta HOM05D007269 ORTHO05D008531 3.0e-28 129.4 225 44.0
Manes.14G048800 Manihot esculenta HOM05D007269 ORTHO05D008531 6.6e-28 128.3 202 42.6
PSO017G6998 Papaver somniferum HOM05D007269 ORTHO05D008531 6.6e-28 128.3 211 40.8
Duzib068G0517 Durio zibethinus HOM05D007269 ORTHO05D008531 8.6e-28 127.9 190 42.6
Potri.012G101800 Populus trichocarpa HOM05D007269 ORTHO05D008531 1.5e-27 127.1 198 42.4
CSS0016059 Camellia sinensis var. sinensis HOM05D007269 ORTHO05D008531 1.9e-27 126.7 211 40.8
Duzib084G1105 Durio zibethinus HOM05D007269 ORTHO05D008531 4.3e-27 125.6 197 41.6
Sabra12G0074700 Salix brachista HOM05D001095 ORTHO05D000976 4.3e-27 125.6 189 42.3
Thecc.02G201200 Theobroma cacao HOM05D007269 ORTHO05D008531 5.6e-27 125.2 251 35.5
CANSAT01G1989 Cannabis sativa HOM05D007269 ORTHO05D008531 2.1e-26 123.2 239 38.9
Ciclev10032794m.g Citrus clementina HOM05D007269 ORTHO05D008531 4.7e-26 122.1 200 40.0
CiPaw.05G106700 Carya illinoinensis HOM05D007269 ORTHO05D008531 8.1e-26 121.3 244 36.1
RcHm_v2.0_Chr4g0429751 Rosa chinensis HOM05D007269 ORTHO05D008531 8.1e-26 121.3 230 36.5
COL.COLO4_36213 Corchorus olitorius HOM05D007269 ORTHO05D008531 1.1e-25 120.9 204 41.2
CiPaw.11G004900 Carya illinoinensis HOM05D007269 ORTHO05D008531 1.2e-24 117.5 196 39.3
MD16G1123500 Malus domestica HOM05D007269 ORTHO05D008531 1.5e-24 117.1 247 37.7
HanXRQChr09g0273431 Helianthus annuus HOM05D007269 ORTHO05D008531 3.4e-24 115.9 201 40.8
CSS0011599 Camellia sinensis var. sinensis HOM05D007269 ORTHO05D008531 9.9e-24 114.4 205 38.0
MBI07_g46909_MAGBIO Magnolia biondii HOM05D007269 ORTHO05D008531 9.9e-24 114.4 247 35.6
Sabra03G0123300 Salix brachista HOM05D007269 ORTHO05D008531 1.7e-23 113.6 221 39.4
PGR119G1209 Punica granatum HOM05D007269 ORTHO05D008531 3.8e-23 112.5 210 37.1
Cpa.g.sc4.165 Carica papaya HOM05D007269 ORTHO05D008531 1.9e-22 110.2 196 39.3
Nitab4.5_0000021g1020 Nicotiana tabacum HOM05D007269 ORTHO05D008531 2.4e-22 109.8 241 35.7
Nitab4.5_0002530g0020 Nicotiana tabacum HOM05D007269 ORTHO05D008531 3.2e-22 109.4 223 33.6
Prupe.1G222200 Prunus persica HOM05D007269 ORTHO05D008531 3.2e-22 109.4 237 40.1
FvH4_4g23360 Fragaria vesca HOM05D007269 ORTHO05D008531 1.6e-21 107.1 246 34.6
Haze_07172 Corylus avellana HOM05D007269 ORTHO05D008531 2.1e-21 106.7 159 43.4
Cfa018768 Carpinus fangiana HOM05D007269 ORTHO05D008531 6.0e-21 105.1 150 42.7
MSTRG.7284 Avicennia marina HOM05D007269 ORTHO05D008531 1.1e-19 100.9 227 34.4
Manes.12G008000 Manihot esculenta HOM05D007269 ORTHO05D008531 1.1e-19 100.9 217 36.4
Potri.003G168200 Populus trichocarpa HOM05D007269 ORTHO05D008531 1.5e-19 100.5 118 51.7
Prupe.5G148200 Prunus persica HOM05D007269 ORTHO05D008531 1.5e-19 100.5 207 39.1
CDE05G2305 Ceratophyllum demersum HOM05D007269 ORTHO05D008531 1.9e-19 100.1 190 40.5
MD14G1153300 Malus domestica HOM05D007269 ORTHO05D008531 1.9e-19 100.1 207 37.7
HanXRQChr05g0153821 Helianthus annuus HOM05D007269 ORTHO05D008531 2.5e-19 99.8 241 33.2
MD06G1137900 Malus domestica HOM05D007269 ORTHO05D008531 4.3e-19 99.0 209 38.8
Solyc03g097430.1 Solanum lycopersicum HOM05D007269 ORTHO05D008531 4.3e-19 99.0 223 32.3
HanXRQChr08g0236471 Helianthus annuus HOM05D007269 ORTHO05D008531 5.6e-19 98.6 226 35.0
Os01g0924200 Oryza sativa ssp. japonica HOM05D007269 ORTHO05D008531 7.3e-19 98.2 195 32.3
FAN08G0669 Fragaria x ananassa HOM05D007269 ORTHO05D008531 2.1e-18 96.7 216 37.5
Lsat_1_v5_gn_4_82360 Lactuca sativa HOM05D007269 ORTHO05D008531 2.1e-18 96.7 206 35.9
FvH4_5g08680 Fragaria vesca HOM05D007269 ORTHO05D008531 4.7e-18 95.5 215 36.7
FAN18G2199 Fragaria x ananassa HOM05D007269 ORTHO05D008531 4.7e-18 95.5 215 36.7
FAN28G2669 Fragaria x ananassa HOM05D007269 ORTHO05D008531 4.7e-18 95.5 215 36.7
Lalb_Chr07g0183561 Lupinus albus HOM05D007269 ORTHO05D008531 4.7e-18 95.5 196 35.7
Zm00001eb364140 Zea mays HOM05D007269 ORTHO05D008531 1.1e-17 94.4 193 33.2
Sopen03g028190 Solanum pennellii HOM05D007269 ORTHO05D008531 1.4e-17 94.0 205 33.2
PGSC0003DMG400026484 Solanum tuberosum HOM05D007269 ORTHO05D008531 1.8e-17 93.6 226 32.7
RcHm_v2.0_Chr7g0189701 Rosa chinensis HOM05D007269 ORTHO05D008531 2.4e-17 93.2 220 34.5
Lj4g0016206 Lotus japonicus HOM05D007269 ORTHO05D008531 3.1e-17 92.8 199 32.2
Migut.M01219 Erythranthe guttata HOM05D007269 ORTHO05D008531 4.0e-17 92.4 228 34.6
FAN12G4201 Fragaria x ananassa HOM05D007269 ORTHO05D008531 4.0e-17 92.4 235 33.2
FAN06G3947 Fragaria x ananassa HOM05D007269 ORTHO05D008531 6.9e-17 91.7 212 36.3
FAN13G1779 Fragaria x ananassa HOM05D007269 ORTHO05D008531 6.9e-17 91.7 215 36.7
Gohir.D01G020800 Gossypium hirsutum HOM05D007269 ORTHO05D008531 6.9e-17 91.7 116 48.3
Gohir.D12G192900 Gossypium hirsutum HOM05D007269 ORTHO05D008531 6.9e-17 91.7 201 34.8
Zm00001eb142990 Zea mays HOM05D007269 ORTHO05D008531 6.9e-17 91.7 199 36.7
Gohir.A01G022800 Gossypium hirsutum HOM05D007269 ORTHO05D008531 8.9e-17 91.3 116 48.3
DCAR_021638 Daucus carota HOM05D007269 ORTHO05D008531 1.5e-16 90.5 236 30.9
Phvul.002G285300 Phaseolus vulgaris HOM05D007269 ORTHO05D008531 1.5e-16 90.5 195 34.4
Gorai.008G207700 Gossypium raimondii HOM05D007269 ORTHO05D008531 2.0e-16 90.1 201 34.8
CAN.G732.21 Capsicum annuum HOM05D007269 ORTHO05D008531 3.4e-16 89.4 219 34.2
Gorai.002G023300 Gossypium raimondii HOM05D007269 ORTHO05D008531 7.6e-16 88.2 269 29.7
ECA232G3539 Erigeron canadensis HOM05D007269 ORTHO05D008531 2.2e-15 86.7 145 37.2
FAN17G1902 Fragaria x ananassa HOM05D007269 ORTHO05D008531 2.2e-15 86.7 225 33.8
Gohir.A12G190800 Gossypium hirsutum HOM05D007269 ORTHO05D008531 4.9e-15 85.5 197 33.0
Sc22g0003750 Simmondsia chinensis HOM05D007269 ORTHO05D008531 4.9e-15 85.5 190 36.3
Cc11_g17250 Coffea canephora HOM05D007269 ORTHO05D008531 5.4e-14 82.0 242 32.6
Lalb_Chr13g0297191 Lupinus albus HOM05D007269 ORTHO05D008531 9.3e-14 81.3 195 31.3
TPR.G28777 Trifolium pratense HOM05D007269 ORTHO05D008531 9.3e-14 81.3 213 33.3
TAR629G3154 Trochodendron aralioides HOM05D007269 ORTHO05D008531 1.0e-12 77.8 145 46.2
Cfa009391 Carpinus fangiana HOM05D007269 ORTHO05D008531 1.3e-12 77.4 166 38.6
Oeu001326.1 Olea europaea HOM05D007269 ORTHO05D008531 1.7e-12 77.0 194 32.0
Oeu001327.1 Olea europaea HOM05D007269 ORTHO05D008531 1.7e-12 77.0 194 32.0
PSO017G1627 Papaver somniferum HOM05D007269 ORTHO05D008531 1.7e-12 77.0 153 37.9
Os12g0460100 Oryza sativa ssp. japonica HOM05D007269 ORTHO05D008531 8.7e-12 74.7 215 32.6
DCAR_021637 Daucus carota HOM05D007269 ORTHO05D008531 2.5e-11 73.2 228 29.8
Rhsim12G0023500 Rhododendron simsii HOM05D007269 ORTHO05D008531 2.5e-11 73.2 141 39.0
MBI07_g27870_MAGBIO Magnolia biondii HOM05D007269 ORTHO05D008531 1.3e-10 70.9 160 40.0
Psat7g036960 Pisum sativum HOM05D007269 ORTHO05D008531 2.1e-10 70.1 213 33.3
Medtr8g096640 Medicago truncatula HOM05D007269 ORTHO05D008531 6.2e-10 68.6 208 33.2
Oeu001328.1 Olea europaea HOM05D007269 ORTHO05D008531 8.1e-10 68.2 174 32.8
Oeu012652.1 Olea europaea HOM05D007269 ORTHO05D008531 1.1e-09 67.8 175 34.3
CARHR257650 Cardamine hirsuta HOM05D012271 ORTHO05D014413 1.8e-09 67.0 189 30.7
Migut.K01007 Erythranthe guttata HOM05D007269 ORTHO05D008531 3.1e-09 66.2 232 33.6
VMungo0251G2992 Vigna mungo HOM05D031312 ORTHO05D008531 5.3e-09 65.5 149 34.9
CsaV3_6G008060 Cucumis sativus L. HOM05D026927 ORTHO05D008531 1.2e-08 64.3 197 34.5
Dinv23173 Davidia involucrata HOM05D007269 ORTHO05D008531 7.6e-08 61.6 165 36.4
Sed0005097 Sechium edule HOM05D026927 ORTHO05D008531 1.3e-07 60.8 199 34.7
AT5G50610 Arabidopsis thaliana HOM05D012271 ORTHO05D014413 2.2e-07 60.1 192 30.2
AT5G50710 Arabidopsis thaliana HOM05D012271 ORTHO05D014413 2.2e-07 60.1 192 30.2
THA.LOC104825024 Tarenaya hassleriana HOM05D012271 ORTHO05D014413 2.2e-07 60.1 181 32.0
Sabra01G0042900 Salix brachista HOM05D007269 ORTHO05D008531 3.8e-07 59.3 79 44.3
TWI18G0336 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 3.8e-07 59.3 119 39.5
ClCG06G002000 Citrullus lanatus HOM05D026927 ORTHO05D008531 6.4e-07 58.5 122 36.1
Carub.0008s1071 Capsella rubella HOM05D012271 ORTHO05D014413 1.9e-06 57.0 165 30.9
MELO3C022330.2 Cucumis melo HOM05D026927 ORTHO05D008531 2.4e-06 56.6 191 28.8
FAN15G2538 Fragaria x ananassa HOM05D007269 ORTHO05D008531 5.4e-06 55.5 151 33.1
Os12g0460400 Oryza sativa ssp. japonica HOM05D007269 ORTHO05D008531 7.1e-06 55.1 221 27.1
BcaB05g24038 Brassica carinata HOM05D012271 ORTHO05D014413 9.3e-06 54.7 167 28.1


User provided reference genes

Program Settings