Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.8e-232 808.9 413 100.0
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 3.0e-163 578.9 416 73.6
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 5.1e-163 578.2 419 71.8
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 1.3e-153 547.0 426 70.2
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 3.7e-153 545.4 395 70.6
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 5.3e-152 541.6 423 68.8
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 8.5e-150 534.3 424 68.6
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 3.2e-149 532.3 397 65.2
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 9.4e-149 530.8 394 70.3
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 9.4e-149 530.8 390 69.5
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 4.7e-148 528.5 426 65.5
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 1.4e-147 526.9 403 65.8
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 3.0e-147 525.8 387 67.2
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 6.7e-147 524.6 424 66.5
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 6.7e-147 524.6 430 65.1
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 2.6e-146 522.7 431 64.0
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 3.7e-145 518.8 394 65.7
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 8.2e-145 517.7 398 66.3
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 3.1e-144 515.8 425 65.9
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 4.1e-144 515.4 393 66.9
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 4.1e-144 515.4 428 63.6
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 7.0e-144 514.6 427 63.2
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 9.1e-144 514.2 388 66.5
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 1.2e-143 513.8 428 64.5
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 1.2e-143 513.8 423 63.8
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 1.6e-143 513.5 426 64.8
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 2.0e-143 513.1 419 65.9
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 4.5e-143 511.9 425 67.1
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 1.3e-142 510.4 398 63.8
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 3.8e-142 508.8 389 66.6
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 3.8e-142 508.8 393 65.9
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 6.5e-142 508.1 419 67.8
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 6.5e-142 508.1 393 67.2
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 1.1e-141 507.3 391 67.8
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 1.5e-141 506.9 420 65.0
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 2.5e-141 506.1 430 64.4
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.2e-140 503.8 397 64.2
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.2e-140 503.8 397 64.2
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 2.7e-140 502.7 428 63.6
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 3.6e-140 502.3 397 64.2
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 8.0e-140 501.1 391 65.0
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 3.0e-139 499.2 433 62.8
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 6.8e-139 498.0 391 63.9
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 6.8e-139 498.0 429 64.3
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 6.8e-139 498.0 429 64.3
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.2e-138 497.3 429 64.3
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 2.6e-138 496.1 388 65.5
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 3.4e-138 495.7 397 64.5
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 5.7e-138 495.0 391 62.7
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 5.7e-138 495.0 428 63.6
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 5.7e-138 495.0 423 63.4
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 1.3e-137 493.8 394 65.0
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 4.8e-137 491.9 438 61.4
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 8.3e-137 491.1 382 66.2
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 1.6e-135 486.9 387 63.8
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 2.7e-135 486.1 392 64.3
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 2.7e-135 486.1 402 64.4
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 3.5e-135 485.7 404 63.9
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 5.9e-135 485.0 389 64.5
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 3.8e-134 482.3 396 62.9
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 2.5e-133 479.6 391 63.4
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 4.2e-133 478.8 430 61.4
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 2.1e-132 476.5 384 64.3
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 1.0e-131 474.2 430 62.1
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 5.2e-131 471.9 425 60.2
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 5.2e-131 471.9 397 63.0
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 6.8e-131 471.5 369 67.2
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.2e-130 470.7 387 62.8
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 1.5e-130 470.3 384 63.3
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 1.5e-130 470.3 387 63.3
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 2.0e-130 469.9 425 61.4
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 2.6e-130 469.5 433 59.8
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 7.5e-130 468.0 361 65.4
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 9.8e-130 467.6 407 61.7
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 2.8e-129 466.1 426 62.9
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.8e-128 463.4 383 62.7
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 2.4e-128 463.0 399 60.9
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 7.7e-127 458.0 423 60.8
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 7.7e-127 458.0 397 61.0
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 8.6e-126 454.5 391 61.6
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 3.3e-125 452.6 420 59.5
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 3.3e-125 452.6 431 59.4
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 9.5e-125 451.1 388 61.6
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.2e-124 450.7 424 59.2
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 2.8e-124 449.5 437 58.4
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 4.7e-124 448.7 421 59.9
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 4.7e-124 448.7 396 59.3
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 8.0e-124 448.0 430 59.3
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.0e-123 447.6 382 62.0
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 1.2e-122 444.1 384 59.4
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 1.5e-122 443.7 390 60.3
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 1.5e-122 443.7 387 58.9
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 2.0e-122 443.4 386 61.7
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 2.6e-122 443.0 423 58.2
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 3.4e-122 442.6 386 59.3
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 7.5e-122 441.4 383 61.4
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 2.9e-121 439.5 391 60.4
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 4.9e-121 438.7 420 58.1
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 6.4e-121 438.3 420 58.1
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 6.4e-121 438.3 420 58.1
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 1.4e-120 437.2 391 59.1
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 2.0e-119 433.3 398 59.8
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 2.7e-119 433.0 381 61.2
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 5.9e-119 431.8 424 57.8
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 1.0e-118 431.0 386 57.8
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 3.9e-118 429.1 426 58.7
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 2.5e-117 426.4 401 56.9
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 1.5e-114 417.2 382 58.4
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 5.8e-114 415.2 387 55.3
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.7e-113 413.7 388 54.9
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 3.7e-113 412.5 458 53.3
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 8.3e-113 411.4 388 54.6
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 1.4e-112 410.6 428 57.0
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 1.9e-112 410.2 428 56.8
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.2e-111 407.5 388 57.7
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 6.0e-111 405.2 393 56.5
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 3.0e-110 402.9 426 56.6
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 1.6e-108 397.1 426 56.3
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 3.1e-107 392.9 394 55.6
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.7e-105 387.1 322 60.6
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 6.6e-102 375.2 311 64.0
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 4.2e-88 329.3 319 53.9
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 4.9e-81 305.8 434 44.5
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 1.3e-78 297.7 248 62.9
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 5.5e-72 275.8 204 68.6
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 7.1e-72 275.4 239 61.1
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 4.6e-71 272.7 325 47.7
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 1.1e-69 268.1 404 40.8
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 4.2e-64 249.6 250 51.2
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 2.1e-60 237.3 225 53.8
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 3.8e-57 226.5 166 67.5
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 7.4e-53 212.2 155 67.7
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 6.3e-52 209.1 153 69.9
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 2.9e-49 200.3 154 66.2
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 3.8e-49 199.9 357 36.4
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 6.5e-49 199.1 148 66.2
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 1.0e-46 191.8 311 37.0
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 1.9e-24 117.9 111 61.3
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 6.5e-17 92.8 76 59.2
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 6.1e-15 86.3 68 66.2
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 6.1e-07 59.7 164 29.9
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 2.3e-06 57.8 199 29.1


User provided reference genes

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