Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 6.0e-113 411.0 227 100.0
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.5e-60 236.9 179 77.7
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 2.0e-60 236.5 185 74.1
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 3.6e-57 225.7 181 69.1
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 5.1e-56 221.9 193 69.9
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 2.0e-55 219.9 184 72.3
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 5.7e-55 218.4 183 65.6
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 9.7e-55 217.6 181 67.4
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 2.2e-54 216.5 191 70.2
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.8e-53 213.4 182 69.8
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.8e-53 213.4 182 69.8
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 4.1e-53 212.2 190 68.4
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 5.3e-53 211.8 188 67.0
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 2.6e-52 209.5 182 68.1
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 3.4e-52 209.1 187 66.8
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 5.9e-52 208.4 185 67.0
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 7.7e-52 208.0 182 68.7
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 5.0e-51 205.3 184 69.6
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 5.0e-51 205.3 190 65.8
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 1.4e-50 203.8 184 66.3
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 1.9e-50 203.4 182 65.9
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 2.5e-50 203.0 180 68.3
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 4.2e-50 202.2 186 67.2
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 2.1e-49 199.9 183 66.1
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 3.6e-49 199.1 183 66.1
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 4.7e-49 198.7 194 63.4
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 1.0e-48 197.6 186 65.1
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 1.4e-48 197.2 178 65.2
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 1.8e-48 196.8 183 66.1
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 3.0e-48 196.1 192 62.5
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 3.9e-48 195.7 183 65.0
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 4.4e-47 192.2 184 66.3
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 9.7e-47 191.0 186 63.4
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.2e-46 189.9 179 62.6
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.8e-46 189.5 179 62.6
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 2.8e-46 189.5 179 63.7
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 2.8e-46 189.5 184 66.8
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 4.8e-46 188.7 180 65.6
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 6.3e-46 188.3 189 62.4
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 8.2e-46 188.0 179 62.0
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 8.2e-46 188.0 179 59.8
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 1.4e-45 187.2 186 64.0
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 2.4e-45 186.4 189 63.5
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 4.1e-45 185.7 179 61.5
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 4.1e-45 185.7 187 62.6
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 7.0e-45 184.9 189 63.0
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 1.2e-44 184.1 178 64.0
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.2e-44 184.1 179 63.7
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 1.5e-44 183.7 185 61.6
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 1.5e-44 183.7 181 60.8
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 2.6e-44 183.0 189 63.5
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 2.6e-44 183.0 184 62.0
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 4.5e-44 182.2 179 62.6
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 5.9e-44 181.8 179 62.0
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 7.7e-44 181.4 187 62.0
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 7.7e-44 181.4 182 63.2
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 7.7e-44 181.4 190 61.6
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 1.0e-43 181.0 183 61.2
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 1.0e-43 181.0 179 57.5
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 2.2e-43 179.9 178 61.8
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 2.9e-43 179.5 195 60.5
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 3.8e-43 179.1 182 61.0
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 3.8e-43 179.1 187 61.5
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 1.9e-42 176.8 186 58.6
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 1.9e-42 176.8 190 61.1
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 3.2e-42 176.0 182 61.5
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 1.6e-41 173.7 185 62.2
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 4.7e-41 172.2 182 59.3
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 1.8e-40 170.2 196 57.7
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 1.8e-40 170.2 196 57.7
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 1.8e-40 170.2 196 57.7
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 3.0e-40 169.5 131 77.9
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 4.0e-40 169.1 184 62.5
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 1.5e-39 167.2 144 70.1
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 7.5e-39 164.9 182 59.3
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 1.3e-38 164.1 183 59.0
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 1.3e-38 164.1 183 59.0
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.7e-38 163.7 131 76.3
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 2.2e-38 163.3 180 55.0
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 2.8e-38 162.9 181 58.6
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 2.8e-38 162.9 191 58.6
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 2.8e-38 162.9 200 50.0
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 3.7e-38 162.5 186 56.5
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 1.1e-37 161.0 188 58.5
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 1.4e-37 160.6 186 58.1
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 2.4e-37 159.8 180 57.2
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 3.1e-37 159.5 181 58.0
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 5.3e-37 158.7 183 57.4
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 7.0e-37 158.3 186 56.5
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 9.1e-37 157.9 196 53.1
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 1.0e-35 154.5 199 54.3
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 1.7e-35 153.7 119 68.9
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 2.9e-35 152.9 203 51.2
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 2.9e-35 152.9 179 56.4
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 2.9e-35 152.9 178 50.6
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 4.2e-34 149.1 185 53.5
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 4.2e-34 149.1 166 53.0
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 7.2e-34 148.3 199 51.8
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 1.6e-33 147.1 204 50.0
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 2.1e-33 146.7 186 54.3
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 6.1e-33 145.2 181 54.7
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 1.4e-32 144.1 185 53.0
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 1.4e-32 144.1 180 55.6
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 1.4e-32 144.1 180 54.4
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 1.8e-32 143.7 192 51.6
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 1.8e-32 143.7 192 51.6
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 5.2e-32 142.1 179 48.0
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 1.5e-31 140.6 186 52.7
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 2.0e-31 140.2 149 63.1
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 2.6e-31 139.8 166 50.0
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 7.5e-31 138.3 179 54.7
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 7.5e-31 138.3 167 50.3
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 2.2e-30 136.7 179 54.2
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 6.3e-30 135.2 179 53.6
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 4.1e-29 132.5 179 53.6
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 1.0e-27 127.9 155 54.8
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 2.2e-27 126.7 130 52.3
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 3.6e-25 119.4 151 53.6
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 1.8e-24 117.1 200 49.5
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 8.8e-24 114.8 138 51.4
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 1.5e-23 114.0 151 52.3
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 1.5e-23 114.0 132 50.0
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 2.6e-23 113.2 103 57.3
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 1.3e-22 110.9 110 61.8
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 2.4e-21 106.7 178 46.1
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 1.9e-18 97.1 104 61.5
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 2.0e-15 87.0 131 42.7
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 3.4e-15 86.3 97 49.5
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 3.4e-15 86.3 126 46.0
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 5.4e-13 79.0 84 53.6
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 7.8e-12 75.1 129 40.3
Lalb_Chr14g0364061 Lupinus albus HOM05D005729 ORTHO05D007026 2.3e-11 73.6 59 83.1
CBR_g4589 Chara braunii HOM05D005729 ORTHO05D007026 3.9e-11 72.8 175 41.7
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 1.9e-10 70.5 123 49.6
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 6.4e-06 55.5 68 45.6


User provided reference genes

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