Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 5.4e-204 714.1 371 100.0
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 5.7e-97 358.6 435 51.3
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 1.4e-95 354.0 442 50.0
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 2.2e-88 330.1 443 47.2
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 2.1e-75 287.0 444 43.0
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 1.1e-74 284.6 434 45.9
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 4.0e-74 282.7 446 44.6
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 1.5e-73 280.8 447 43.0
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 2.0e-73 280.4 437 44.6
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 4.1e-71 272.7 429 44.1
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 1.2e-70 271.2 452 43.1
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 1.0e-69 268.1 433 44.1
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 2.5e-68 263.5 425 44.0
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 3.3e-68 263.1 429 43.8
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 2.1e-67 260.4 437 42.8
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 8.9e-66 255.0 450 40.9
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 1.3e-64 251.1 451 39.9
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 2.2e-64 250.4 428 43.0
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 2.2e-64 250.4 442 40.7
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 6.4e-64 248.8 442 40.7
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 1.1e-63 248.1 445 41.1
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 2.4e-63 246.9 430 39.5
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 2.4e-63 246.9 449 41.2
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 3.2e-63 246.5 429 41.0
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 3.2e-63 246.5 430 40.5
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 4.2e-63 246.1 449 40.3
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 5.4e-63 245.7 444 39.6
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 9.3e-63 245.0 453 38.6
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 9.3e-63 245.0 440 40.5
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 1.2e-62 244.6 450 38.7
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 2.1e-62 243.8 418 43.5
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 4.6e-62 242.7 439 40.3
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.7e-61 240.7 452 38.5
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 3.9e-61 239.6 451 38.8
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 3.9e-61 239.6 444 39.0
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 6.6e-61 238.8 541 35.7
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 8.7e-61 238.4 426 39.4
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.1e-60 238.0 428 40.0
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.1e-60 238.0 451 38.1
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 4.3e-60 236.1 445 38.0
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 1.3e-59 234.6 454 39.2
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.1e-58 231.5 438 39.7
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 1.4e-58 231.1 458 39.7
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 1.4e-58 231.1 444 38.1
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 4.0e-58 229.6 444 38.1
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 9.0e-58 228.4 439 41.2
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 9.0e-58 228.4 441 37.4
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 1.5e-57 227.6 434 40.1
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 4.5e-57 226.1 432 37.7
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 5.8e-57 225.7 446 38.1
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.3e-56 224.6 447 37.8
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 2.2e-56 223.8 432 40.3
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 3.8e-56 223.0 429 38.2
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 8.4e-56 221.9 428 38.6
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 8.4e-56 221.9 427 38.4
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 2.4e-55 220.3 431 38.1
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 7.9e-54 215.3 426 39.7
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 1.0e-53 214.9 432 38.2
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 5.1e-53 212.6 418 37.1
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 5.1e-53 212.6 433 37.4
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 1.5e-52 211.1 436 37.6
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 1.9e-52 210.7 421 37.8
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 1.9e-52 210.7 446 38.8
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 5.6e-52 209.1 440 39.1
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 9.6e-52 208.4 463 37.4
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 1.6e-51 207.6 425 37.6
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 2.8e-51 206.8 432 36.8
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.6e-51 206.5 426 36.6
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 4.8e-51 206.1 436 37.6
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 6.2e-51 205.7 446 38.3
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 8.1e-51 205.3 374 40.1
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.8e-50 204.1 437 37.3
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 4.0e-50 203.0 436 37.4
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 6.9e-50 202.2 375 40.5
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 6.9e-50 202.2 430 36.7
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 1.5e-49 201.1 422 38.2
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 2.0e-49 200.7 444 36.9
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 2.6e-49 200.3 439 37.8
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 3.4e-49 199.9 432 36.6
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 1.7e-48 197.6 434 39.2
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 2.9e-48 196.8 446 37.4
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 2.9e-48 196.8 434 37.3
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 8.4e-48 195.3 478 35.8
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 8.4e-48 195.3 265 45.3
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 1.9e-47 194.1 429 35.7
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 1.2e-46 191.4 449 34.5
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.2e-46 191.4 419 37.7
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 1.3e-45 188.0 388 35.8
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 5.1e-45 186.0 428 36.4
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 5.1e-45 186.0 408 38.2
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 1.5e-44 184.5 425 35.1
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 2.5e-44 183.7 429 32.4
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 4.3e-44 183.0 430 35.6
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 7.4e-44 182.2 426 35.9
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 9.6e-44 181.8 429 35.9
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 9.6e-44 181.8 424 37.5
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 1.3e-43 181.4 424 36.8
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 1.6e-43 181.0 353 39.7
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 1.6e-43 181.0 424 37.0
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 3.7e-43 179.9 443 34.1
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 3.7e-43 179.9 424 35.4
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 6.2e-43 179.1 431 37.1
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 1.4e-42 177.9 431 35.3
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 1.4e-42 177.9 430 35.3
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 1.8e-42 177.6 453 33.8
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 1.8e-42 177.6 424 36.8
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 6.9e-42 175.6 447 34.0
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 6.9e-42 175.6 406 37.2
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 2.0e-41 174.1 400 36.0
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 2.0e-41 174.1 397 33.8
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.4e-41 173.3 424 36.8
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 5.8e-41 172.6 443 34.1
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 7.6e-41 172.2 424 36.1
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 1.0e-40 171.8 430 34.9
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 1.3e-40 171.4 469 32.0
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.8e-40 169.9 424 35.8
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 3.8e-40 169.9 425 34.6
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 6.5e-40 169.1 474 33.8
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.9e-39 167.5 432 34.3
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 3.2e-39 166.8 435 33.1
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 1.2e-38 164.9 434 33.6
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 2.7e-38 163.7 432 35.4
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 7.9e-38 162.2 435 36.1
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 1.3e-37 161.4 377 35.3
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 3.0e-37 160.2 427 35.4
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 5.1e-37 159.5 382 35.1
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 6.7e-37 159.1 433 32.8
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 8.7e-37 158.7 420 34.8
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 1.1e-36 158.3 379 35.6
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 2.5e-36 157.1 368 35.6
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 3.3e-36 156.8 382 35.3
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 3.3e-36 156.8 443 31.8
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 1.3e-35 154.8 431 34.3
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.3e-35 154.8 361 34.9
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 3.7e-35 153.3 415 33.5
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 1.8e-34 151.0 411 33.6
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 2.4e-34 150.6 434 34.1
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 4.5e-33 146.4 439 32.8
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 5.9e-33 146.0 408 32.1
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 5.9e-33 146.0 407 33.9
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 1.7e-32 144.4 411 33.6
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 2.9e-32 143.7 411 34.8
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 2.9e-32 143.7 435 32.4
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 2.9e-32 143.7 349 38.1
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 3.8e-32 143.3 441 32.7
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 1.4e-31 141.4 393 32.3
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 2.5e-31 140.6 392 34.2
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 2.7e-30 137.1 441 33.8
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 1.0e-29 135.2 407 32.7
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 5.1e-29 132.9 425 32.7
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 1.5e-28 131.3 335 34.0
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 1.3e-27 128.3 251 43.8
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 1.3e-27 128.3 445 29.7
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 2.2e-27 127.5 443 28.7
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 3.7e-27 126.7 399 34.1
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 1.4e-26 124.8 363 32.5
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 2.4e-26 124.0 404 29.5
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 1.7e-24 117.9 190 43.2
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 1.4e-23 114.8 311 32.2
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 9.4e-23 112.1 418 28.5
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.2e-22 111.7 302 35.1
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 2.8e-19 100.5 186 39.8
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 9.1e-18 95.5 283 33.2
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 1.4e-15 88.2 265 34.0
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 2.1e-14 84.3 237 34.6
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.7e-14 84.0 201 32.8
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 2.7e-14 84.0 279 33.0
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 4.7e-14 83.2 272 32.4
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 6.1e-14 82.8 173 37.0
C07p23110 Brassica napus HOM05D003379 ORTHO05D003862 1.8e-13 81.3 240 32.1
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 3.9e-13 80.1 415 27.0
BolC7t42848H Brassica oleracea HOM05D003379 ORTHO05D003862 1.5e-12 78.2 196 34.2
FAN05G4320 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.0e-12 77.8 168 34.5
C01p04570 Brassica napus HOM05D003379 ORTHO05D003862 2.6e-12 77.4 213 32.4
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 4.4e-12 76.6 370 25.9
CARHR199410 Cardamine hirsuta HOM05D003379 ORTHO05D003862 2.2e-11 74.3 123 41.5
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 2.2e-11 74.3 309 29.1
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 6.3e-11 72.8 381 24.9
C09p44800 Brassica napus HOM05D003379 ORTHO05D003862 1.1e-10 72.0 247 29.1
RcHm_v2.0_Chr2g0176501 Rosa chinensis HOM05D003379 ORTHO05D003862 1.2e-09 68.6 148 34.5
BcaC09g48308 Brassica carinata HOM05D003379 ORTHO05D003862 1.0e-08 65.5 74 51.4
C08p33300 Brassica napus HOM05D003379 ORTHO05D003862 1.3e-08 65.1 130 36.9
C09p09610 Brassica napus HOM05D003379 ORTHO05D003862 2.2e-08 64.3 132 36.4
C09p11640 Brassica napus HOM05D003379 ORTHO05D003862 2.7e-06 57.4 196 30.1
BolC9t57591H Brassica oleracea HOM05D013459 ORTHO05D018689 2.7e-06 57.4 193 29.5
Ah.14g088790 Amaranthus hybridus HOM05D003379 ORTHO05D003862 3.6e-06 57.0 123 37.4
SalBow6G4465 Salvia bowleyana HOM05D003379 ORTHO05D003862 3.6e-06 57.0 142 34.5


User provided reference genes

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