Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22124 Nelumbo nucifera HOM05D002468 ORTHO05D009172 9.9e-115 416.8 206 100.0
TAR622G1298 Trochodendron aralioides HOM05D002468 ORTHO05D009172 3.1e-76 288.9 201 69.7
Aqoxy5G03072 Aquilegia oxysepala HOM05D002468 ORTHO05D009172 4.1e-68 261.9 203 66.0
GSVIVG01001099001 Vitis vinifera HOM05D002468 ORTHO05D009172 5.9e-67 258.1 203 65.5
Ca_07032_v3 Cicer arietinum L. HOM05D002468 ORTHO05D009172 4.2e-65 251.9 157 77.1
Dinv17538 Davidia involucrata HOM05D002468 ORTHO05D009172 7.2e-65 251.1 205 64.4
Prupe.1G214100 Prunus persica HOM05D002468 ORTHO05D009172 2.1e-64 249.6 210 61.0
TWI36G1656 Tripterygium wilfordii HOM05D002468 ORTHO05D009172 3.6e-64 248.8 204 63.2
TWI75G1838 Tripterygium wilfordii HOM05D002468 ORTHO05D009172 1.4e-63 246.9 205 62.9
Cfa009456 Carpinus fangiana HOM05D002468 ORTHO05D009172 3.9e-63 245.4 206 62.1
Aa31LG3G14280 Aethionema arabicum HOM05D002468 ORTHO05D009172 4.4e-62 241.9 211 60.2
Hma1.2p1_1436F.1_g283230 Hydrangea macrophylla HOM05D002468 ORTHO05D009172 4.4e-62 241.9 202 62.9
Actinidia30582 Actinidia chinensis HOM05D002468 ORTHO05D009172 5.7e-62 241.5 206 64.1
ClCG07G011930 Citrullus lanatus HOM05D002468 ORTHO05D009172 5.7e-62 241.5 141 80.1
Nitab4.5_0002569g0030 Nicotiana tabacum HOM05D002468 ORTHO05D009172 5.7e-62 241.5 201 64.2
Thecc.02G191300 Theobroma cacao HOM05D002468 ORTHO05D009172 7.4e-62 241.1 206 63.1
Atru.chr12.1429 Acer truncatum HOM05D002468 ORTHO05D009172 1.7e-61 240.0 205 61.0
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.7e-61 240.0 143 81.1
CAN.G624.2 Capsicum annuum HOM05D002468 ORTHO05D009172 1.7e-61 240.0 204 61.3
A02p01900 Brassica napus HOM05D002468 ORTHO05D009172 2.2e-61 239.6 201 63.7
BraA02t05163Z Brassica rapa HOM05D002468 ORTHO05D009172 2.2e-61 239.6 201 63.7
Lalb_Chr04g0257311 Lupinus albus HOM05D002468 ORTHO05D009172 3.7e-61 238.8 162 72.2
Manes.08G100500 Manihot esculenta HOM05D002468 ORTHO05D009172 3.7e-61 238.8 204 61.3
Nitab4.5_0004349g0030 Nicotiana tabacum HOM05D002468 ORTHO05D009172 3.7e-61 238.8 203 63.5
Sed0016874 Sechium edule HOM05D002468 ORTHO05D009172 4.8e-61 238.4 203 62.6
TPR.G9727 Trifolium pratense HOM05D002468 ORTHO05D009172 4.8e-61 238.4 152 75.7
Aqoxy5G03073 Aquilegia oxysepala HOM05D002468 ORTHO05D009172 6.3e-61 238.0 204 61.8
Rhsim12G0017000 Rhododendron simsii HOM05D002468 ORTHO05D009172 6.3e-61 238.0 205 60.5
CiPaw.05G100600 Carya illinoinensis HOM05D002468 ORTHO05D009172 8.2e-61 237.7 206 60.7
Ciclev10005642m.g Citrus clementina HOM05D002468 ORTHO05D009172 1.1e-60 237.3 209 59.8
Phvul.008G009400 Phaseolus vulgaris HOM05D002468 ORTHO05D009172 1.4e-60 236.9 152 73.7
Sopen11g017130 Solanum pennellii HOM05D002468 ORTHO05D009172 1.4e-60 236.9 159 71.7
Solyc11g033284.1 Solanum lycopersicum HOM05D002468 ORTHO05D009172 1.8e-60 236.5 164 70.1
MD16G1141800 Malus domestica HOM05D002468 ORTHO05D009172 2.4e-60 236.1 205 57.6
vmacro01016 Vaccinium macrocarpon HOM05D002468 ORTHO05D009172 4.1e-60 235.3 142 79.6
MSTRG.8059 Avicennia marina HOM05D002468 ORTHO05D009172 6.9e-60 234.6 149 75.2
Lsat_1_v5_gn_3_32621 Lactuca sativa HOM05D002468 ORTHO05D009172 6.9e-60 234.6 201 59.7
QL03p049029 Quercus lobata HOM05D002468 ORTHO05D009172 6.9e-60 234.6 141 78.7
VMungo1383G2635 Vigna mungo HOM05D002468 ORTHO05D009172 6.9e-60 234.6 152 73.0
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 9.1e-60 234.2 145 77.2
Carub.0006s1157 Capsella rubella HOM05D002468 ORTHO05D009172 1.2e-59 233.8 202 59.9
AT5G13410 Arabidopsis thaliana HOM05D002468 ORTHO05D009172 1.5e-59 233.4 202 59.9
THA.LOC104825606 Tarenaya hassleriana HOM05D002468 ORTHO05D009172 1.5e-59 233.4 202 59.4
AL6G24030 Arabidopsis lyrata HOM05D002468 ORTHO05D009172 2.0e-59 233.0 202 60.4
Potri.001G068300 Populus trichocarpa HOM05D002468 ORTHO05D009172 2.0e-59 233.0 142 77.5
PGSC0003DMG401028027 Solanum tuberosum HOM05D002468 ORTHO05D009172 2.0e-59 233.0 159 70.4
RcHm_v2.0_Chr4g0428781 Rosa chinensis HOM05D002468 ORTHO05D009172 2.6e-59 232.6 201 57.7
Sabra01G0047500 Salix brachista HOM05D002468 ORTHO05D009172 2.6e-59 232.6 146 76.0
Sp6g30610 Schrenkiella parvula HOM05D002468 ORTHO05D009172 2.6e-59 232.6 202 59.9
Medtr7g006570 Medicago truncatula HOM05D002468 ORTHO05D009172 4.5e-59 231.9 152 73.0
BcaNung01157 Brassica carinata HOM05D002468 ORTHO05D009172 7.7e-59 231.1 201 61.7
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 7.7e-59 231.1 145 77.9
CARHR200020 Cardamine hirsuta HOM05D002468 ORTHO05D009172 7.7e-59 231.1 202 60.9
Migut.K01048 Erythranthe guttata HOM05D002468 ORTHO05D009172 7.7e-59 231.1 139 79.1
BcaNung01882 Brassica carinata HOM05D002468 ORTHO05D009172 1.0e-58 230.7 201 61.2
Eucgr.G01979 Eucalyptus grandis HOM05D002468 ORTHO05D009172 1.7e-58 229.9 146 74.7
Lj1g0015804 Lotus japonicus HOM05D002468 ORTHO05D009172 1.7e-58 229.9 141 77.3
MELO3C017816.2 Cucumis melo HOM05D002468 ORTHO05D009172 2.2e-58 229.6 140 77.1
Peaxi162Scf00842g00418 Petunia axillaris HOM05D002468 ORTHO05D009172 2.2e-58 229.6 204 58.8
CsaV3_4G002230 Cucumis sativus L. HOM05D002468 ORTHO05D009172 2.9e-58 229.2 140 77.1
FvH4_4g22550 Fragaria vesca HOM05D002468 ORTHO05D009172 2.9e-58 229.2 201 60.7
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 2.9e-58 229.2 201 61.2
Gohir.D04G141000 Gossypium hirsutum HOM05D002468 ORTHO05D009172 5.0e-58 228.4 205 59.0
FAN07G2873 Fragaria x ananassa HOM05D002468 ORTHO05D009172 6.5e-58 228.0 203 58.6
Gorai.012G126000 Gossypium raimondii HOM05D002468 ORTHO05D009172 6.5e-58 228.0 205 59.0
MBI11_g34559_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D009172 6.5e-58 228.0 196 62.2
Cc11_g14950 Coffea canephora HOM05D002468 ORTHO05D009172 1.4e-57 226.9 151 71.5
Sc11g0000070 Simmondsia chinensis HOM05D002468 ORTHO05D009172 1.4e-57 226.9 172 65.7
Glyma.18G292600 Glycine max HOM05D002468 ORTHO05D009172 1.9e-57 226.5 128 82.8
CANSAT80G1997 Cannabis sativa HOM05D002468 ORTHO05D009172 4.2e-57 225.3 139 75.5
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 1.2e-56 223.8 139 74.8
PSO017G2800 Papaver somniferum HOM05D002468 ORTHO05D009172 2.1e-56 223.0 172 62.8
HPP92_024421 Vanilla planifolia HOM05D002468 ORTHO05D009172 4.7e-56 221.9 208 59.1
DCAR_026442 Daucus carota HOM05D002468 ORTHO05D009172 1.8e-55 219.9 139 75.5
PGR119G1456 Punica granatum HOM05D002468 ORTHO05D009172 3.0e-55 219.2 214 57.0
ATR0582G095 Amborella trichopoda HOM05D002468 ORTHO05D009172 5.2e-55 218.4 129 79.8
CDE06G1087 Ceratophyllum demersum HOM05D002468 ORTHO05D009172 6.7e-55 218.0 168 65.5
Zm00001eb040970 Zea mays HOM05D002468 ORTHO05D009172 6.7e-55 218.0 140 77.9
BolC2t06553H Brassica oleracea HOM05D002468 ORTHO05D009172 3.3e-54 215.7 203 58.1
Thhalv10014743m.g Eutrema salsugineum HOM05D002468 ORTHO05D009172 3.3e-54 215.7 136 75.0
Os07g0133700 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D009172 7.4e-54 214.5 138 77.5
Oeu010258.1 Olea europaea HOM05D002468 ORTHO05D009172 1.3e-53 213.8 233 52.8
AUR62041001 Chenopodium quinoa HOM05D002468 ORTHO05D009172 6.3e-53 211.5 163 66.9
SEGI_23050 Sequoiadendron giganteum HOM05D002468 ORTHO05D009172 1.1e-52 210.7 142 69.7
C02p06120 Brassica napus HOM05D002468 ORTHO05D009172 1.4e-52 210.3 217 53.5
EL10Ac7g17009 Beta vulgaris HOM05D002468 ORTHO05D009172 5.3e-52 208.4 115 83.5
Pp3c16_12110 Physcomitrium patens HOM05D002468 ORTHO05D009172 3.8e-50 202.2 212 51.9
Lj6A840G36 Lonicera japonica HOM05D002468 ORTHO05D009172 6.5e-50 201.4 106 86.8
Psat3g206960 Pisum sativum HOM05D002468 ORTHO05D009172 4.2e-49 198.7 178 56.7
Glyma.02G090600 Glycine max HOM05D002468 ORTHO05D009172 1.2e-48 197.2 141 67.4
AagrBONN_evm.TU.Sc2ySwM_344.1577 Anthoceros agrestis HOM05D002468 ORTHO05D009172 4.7e-48 195.3 160 61.9
Ah.06g186920 Amaranthus hybridus HOM05D002468 ORTHO05D009172 1.4e-47 193.7 143 68.5
SGA_v2.0_scaffold258G45770 Striga asiatica HOM05D002468 ORTHO05D009172 4.0e-47 192.2 195 54.4
Mapoly0061s0100 Marchantia polymorpha HOM05D002468 ORTHO05D009172 1.1e-44 184.1 151 59.6
Pp3c5_13790 Physcomitrium patens HOM05D002468 ORTHO05D009172 1.4e-44 183.7 114 73.7
Cpa.g.sc38.65 Carica papaya HOM05D002468 ORTHO05D009172 2.4e-44 183.0 93 91.4
SMO137G0309 Selaginella moellendorffii HOM05D002468 ORTHO05D009172 7.7e-43 177.9 106 74.5
CBR_g38077 Chara braunii HOM05D002468 ORTHO05D009172 3.2e-41 172.6 126 64.3
Cre12.g534700 Chlamydomonas reinhardtii HOM05D002468 ORTHO05D009172 3.7e-37 159.1 141 56.0
arahy.Tifrunner.gnm1.ann1.PEQR69 Arachis hypogaea HOM05D002468 ORTHO05D009172 1.8e-36 156.8 132 60.6
arahy.Tifrunner.gnm1.ann1.QPD63Z Arachis hypogaea HOM05D002468 ORTHO05D009172 1.8e-36 156.8 132 60.6
Gohir.A04G101800 Gossypium hirsutum HOM05D002468 ORTHO05D009172 3.5e-35 152.5 205 45.4
PRCOL_00000716 Prasinoderma coloniale HOM05D002468 ORTHO05D009172 5.7e-30 135.2 107 60.7
Hma1.2p1_1436F.1_g283220 Hydrangea macrophylla HOM05D002468 ORTHO05D009172 1.4e-28 130.6 147 49.7
THA.LOC104816706 Tarenaya hassleriana HOM05D002468 ORTHO05D009172 4.3e-25 119.0 63 85.7
MCO06G148 Micromonas commoda HOM05D002468 ORTHO05D009172 1.3e-18 97.4 94 53.2
QL02p011811 Quercus lobata HOM05D002468 ORTHO05D009172 3.3e-17 92.8 47 89.4
MD13G1131500 Malus domestica HOM05D002468 ORTHO05D009172 3.6e-16 89.4 56 73.2
MCO11G048 Micromonas commoda HOM05D002468 ORTHO05D009172 5.8e-14 82.0 88 45.5
PRCOL_00003949 Prasinoderma coloniale HOM05D002468 ORTHO05D009172 4.9e-13 79.0 87 47.1
Cre02.g095122 Chlamydomonas reinhardtii HOM05D002468 ORTHO05D009172 5.6e-09 65.5 94 38.3
Eucgr.C02176 Eucalyptus grandis HOM05D005939 ORTHO05D007412 5.2e-07 58.9 166 30.1
TWI38G2333 Tripterygium wilfordii HOM05D005939 ORTHO05D007412 1.2e-06 57.8 140 30.7
Ca_20809_v3 Cicer arietinum L. HOM05D005939 ORTHO05D007412 2.6e-06 56.6 157 31.8
Peaxi162Scf00811g00112 Petunia axillaris HOM05D005939 ORTHO05D007412 2.6e-06 56.6 166 30.7
GSVIVG01038097001 Vitis vinifera HOM05D005939 ORTHO05D007412 2.6e-06 56.6 164 31.1
AT2G43560 Arabidopsis thaliana HOM05D005939 ORTHO05D007412 3.4e-06 56.2 138 32.6
Carub.0004s2605 Capsella rubella HOM05D005939 ORTHO05D007412 3.4e-06 56.2 158 30.4
ECA240G4247 Erigeron canadensis HOM05D007218 ORTHO05D008812 3.4e-06 56.2 107 30.8
AL4G42360 Arabidopsis lyrata HOM05D005939 ORTHO05D007412 4.4e-06 55.8 138 32.6
VMungo1127G1625 Vigna mungo HOM05D005939 ORTHO05D007412 4.4e-06 55.8 177 28.8
Eucgr.E01894 Eucalyptus grandis HOM05D007400 ORTHO05D009351 5.8e-06 55.5 97 35.1
Thhalv10001621m.g Eutrema salsugineum HOM05D005939 ORTHO05D007412 5.8e-06 55.5 140 32.9
Glyma.12G049500 Glycine max HOM05D005939 ORTHO05D007412 5.8e-06 55.5 178 29.2
Prupe.1G203000 Prunus persica HOM05D005939 ORTHO05D007412 5.8e-06 55.5 163 30.7
EL10Ac1g00779 Beta vulgaris HOM05D007218 ORTHO05D008812 7.5e-06 55.1 107 29.0
Cc06_g20200 Coffea canephora HOM05D005939 ORTHO05D007412 7.5e-06 55.1 163 30.1
COL.COLO4_12426 Corchorus olitorius HOM05D001866 ORTHO05D001915 7.5e-06 55.1 89 33.7
CsaV3_4G002650 Cucumis sativus L. HOM05D005939 ORTHO05D007412 7.5e-06 55.1 140 32.9
Duzib133G0872 Durio zibethinus HOM05D007218 ORTHO05D008812 7.5e-06 55.1 89 33.7
Aa31LG1G25290 Aethionema arabicum HOM05D005939 ORTHO05D007412 9.9e-06 54.7 143 33.6
MSTRG.22020 Avicennia marina HOM05D005939 ORTHO05D007412 9.9e-06 54.7 138 29.7
ClCG07G015100 Citrullus lanatus HOM05D005939 ORTHO05D007412 9.9e-06 54.7 140 32.1


User provided reference genes

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