Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22123 Nelumbo nucifera HOM05D006396 ORTHO05D008172 6.3e-146 520.8 268 100.0
TAR622G0848 Trochodendron aralioides HOM05D006396 ORTHO05D008172 1.7e-106 389.8 267 80.9
Dinv33276 Davidia involucrata HOM05D006396 ORTHO05D008172 2.3e-103 379.4 276 75.4
GSVIVG01032980001 Vitis vinifera HOM05D006396 ORTHO05D008172 8.6e-103 377.5 270 77.0
Thecc.04G048300 Theobroma cacao HOM05D006396 ORTHO05D008172 3.1e-100 369.0 276 72.8
Manes.11G076200 Manihot esculenta HOM05D006396 ORTHO05D008172 2.0e-99 366.3 279 72.0
Cpa.g.sc70.60 Carica papaya HOM05D006396 ORTHO05D008172 5.8e-99 364.8 246 78.0
Cfa007142 Carpinus fangiana HOM05D006396 ORTHO05D008172 1.3e-98 363.6 271 72.7
QL02p069325 Quercus lobata HOM05D006396 ORTHO05D008172 1.4e-97 360.1 275 72.7
Haze_14981 Corylus avellana HOM05D006396 ORTHO05D008172 7.1e-97 357.8 247 76.9
COL.COLO4_13379 Corchorus olitorius HOM05D006396 ORTHO05D008172 2.1e-96 356.3 246 76.4
Lalb_Chr14g0364101 Lupinus albus HOM05D006396 ORTHO05D008172 2.7e-96 355.9 248 75.8
Oeu041974.1 Olea europaea HOM05D006396 ORTHO05D008172 7.8e-96 354.4 239 77.0
SalBow1G8636 Salvia bowleyana HOM05D006396 ORTHO05D008172 7.8e-96 354.4 252 75.0
MSTRG.15316 Avicennia marina HOM05D006396 ORTHO05D008172 3.9e-95 352.1 260 73.8
Gohir.D11G068100 Gossypium hirsutum HOM05D006396 ORTHO05D008172 1.1e-94 350.5 273 70.7
Gorai.007G072900 Gossypium raimondii HOM05D006396 ORTHO05D008172 1.1e-94 350.5 273 70.7
vmacro18382 Vaccinium macrocarpon HOM05D006396 ORTHO05D008172 1.5e-94 350.1 280 68.6
CiPaw.04G001100 Carya illinoinensis HOM05D006396 ORTHO05D008172 4.3e-94 348.6 272 71.3
AUR62037820 Chenopodium quinoa HOM05D006396 ORTHO05D008172 9.6e-94 347.4 269 69.1
Ciclev10016116m.g Citrus clementina HOM05D006396 ORTHO05D008172 9.6e-94 347.4 285 68.8
Gohir.A11G063800 Gossypium hirsutum HOM05D006396 ORTHO05D008172 1.2e-93 347.1 264 70.8
Sabra16G0314900 Salix brachista HOM05D006396 ORTHO05D008172 2.8e-93 345.9 281 70.1
VMungo0464G1242 Vigna mungo HOM05D006396 ORTHO05D008172 3.6e-93 345.5 272 71.7
Phvul.004G069700 Phaseolus vulgaris HOM05D006396 ORTHO05D008172 4.7e-93 345.1 267 71.9
SGA_v2.0_scaffold174G39282 Striga asiatica HOM05D006396 ORTHO05D008172 8.1e-93 344.4 203 86.7
Rhsim08G0038900 Rhododendron simsii HOM05D006396 ORTHO05D008172 1.4e-92 343.6 272 71.0
Lj1g0009632 Lotus japonicus HOM05D006396 ORTHO05D008172 1.8e-92 343.2 272 71.7
Ah.03g136630 Amaranthus hybridus HOM05D006396 ORTHO05D008172 2.4e-92 342.8 271 70.1
Eucgr.I01598 Eucalyptus grandis HOM05D006396 ORTHO05D008172 5.3e-92 341.7 272 69.9
Sabra16G0313400 Salix brachista HOM05D006396 ORTHO05D008172 6.9e-92 341.3 281 69.4
Glyma.16G147700 Glycine max HOM05D006396 ORTHO05D008172 9.0e-92 340.9 229 78.2
Potri.001G463200 Populus trichocarpa HOM05D006396 ORTHO05D008172 2.6e-91 339.3 285 69.1
Atru.chr6.2699 Acer truncatum HOM05D006396 ORTHO05D008172 3.4e-91 339.0 270 68.1
PGR142G1470 Punica granatum HOM05D006396 ORTHO05D008172 7.6e-91 337.8 271 69.0
Hund12907 Selenicereus undatus HOM05D006396 ORTHO05D008172 7.6e-91 337.8 270 70.7
AUR62017434 Chenopodium quinoa HOM05D006396 ORTHO05D008172 2.2e-90 336.3 271 67.9
FAN05G4097 Fragaria x ananassa HOM05D006396 ORTHO05D008172 6.4e-90 334.7 246 74.4
RcHm_v2.0_Chr2g0176531 Rosa chinensis HOM05D006396 ORTHO05D008172 1.9e-89 333.2 250 72.0
Aqoxy5G03069 Aquilegia oxysepala HOM05D006396 ORTHO05D008172 3.2e-89 332.4 279 70.6
Actinidia37717 Actinidia chinensis HOM05D006396 ORTHO05D008172 5.4e-89 331.6 258 71.7
Medtr7g084160 Medicago truncatula HOM05D006396 ORTHO05D008172 5.4e-89 331.6 270 68.5
TWI39G0493 Tripterygium wilfordii HOM05D006396 ORTHO05D008172 5.4e-89 331.6 278 69.4
Solyc02g005210.3 Solanum lycopersicum HOM05D006396 ORTHO05D008172 7.1e-89 331.3 233 76.4
FAN14G4577 Fragaria x ananassa HOM05D006396 ORTHO05D008172 9.3e-89 330.9 248 72.2
arahy.Tifrunner.gnm1.ann1.P0PZ58 Arachis hypogaea HOM05D006396 ORTHO05D008172 1.2e-88 330.5 268 68.7
arahy.Tifrunner.gnm1.ann1.Q1FZEB Arachis hypogaea HOM05D006396 ORTHO05D008172 1.2e-88 330.5 276 68.1
FAN09G2227 Fragaria x ananassa HOM05D006396 ORTHO05D008172 2.7e-88 329.3 248 71.8
Lj7A617G76 Lonicera japonica HOM05D006396 ORTHO05D008172 3.5e-88 328.9 187 87.7
ClCG01G007850 Citrullus lanatus HOM05D006396 ORTHO05D008172 4.6e-88 328.6 199 82.4
unitig_32.g11883 Utricularia gibba HOM05D006396 ORTHO05D008172 4.6e-88 328.6 229 74.7
PGSC0003DMG400014532 Solanum tuberosum HOM05D006396 ORTHO05D008172 6.0e-88 328.2 222 78.4
MD17G1006700 Malus domestica HOM05D006396 ORTHO05D008172 7.8e-88 327.8 189 88.9
Prupe.3G313700 Prunus persica HOM05D006396 ORTHO05D008172 7.8e-88 327.8 226 77.9
Sopen02g001100 Solanum pennellii HOM05D006396 ORTHO05D008172 7.8e-88 327.8 233 75.5
Hma1.2p1_1389F.1_g279970 Hydrangea macrophylla HOM05D006396 ORTHO05D008172 1.0e-87 327.4 188 87.8
Glyma.02G066600 Glycine max HOM05D006396 ORTHO05D008172 1.3e-87 327.0 222 78.8
CANSAT21G0889 Cannabis sativa HOM05D006396 ORTHO05D008172 2.3e-87 326.2 198 83.3
DCAR_014466 Daucus carota HOM05D006396 ORTHO05D008172 5.1e-87 325.1 274 67.2
Nitab4.5_0005452g0030 Nicotiana tabacum HOM05D006396 ORTHO05D008172 5.1e-87 325.1 272 68.8
PSO017G3463 Papaver somniferum HOM05D006396 ORTHO05D008172 5.1e-87 325.1 276 67.4
Ca_08202_v3 Cicer arietinum L. HOM05D006396 ORTHO05D008172 6.6e-87 324.7 273 69.6
CSS0007606 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 8.7e-87 324.3 196 85.7
Nitab4.5_0000139g0180 Nicotiana tabacum HOM05D006396 ORTHO05D008172 1.5e-86 323.6 271 66.8
Sed0011277 Sechium edule HOM05D006396 ORTHO05D008172 1.5e-86 323.6 267 69.7
CsaV3_5G024930 Cucumis sativus L. HOM05D006396 ORTHO05D008172 2.5e-86 322.8 266 67.7
PSO478G0237 Papaver somniferum HOM05D006396 ORTHO05D008172 3.3e-86 322.4 276 67.0
Psat0s4148g0040 Pisum sativum HOM05D006396 ORTHO05D008172 3.3e-86 322.4 274 67.2
CAN.G1108.4 Capsicum annuum HOM05D006396 ORTHO05D008172 5.6e-86 321.6 261 69.3
HanXRQChr17g0550901 Helianthus annuus HOM05D006396 ORTHO05D008172 1.3e-85 320.5 274 69.0
ATR0582G370 Amborella trichopoda HOM05D006396 ORTHO05D008172 1.6e-85 320.1 196 83.7
Cc07_g01330 Coffea canephora HOM05D006396 ORTHO05D008172 1.6e-85 320.1 264 67.8
ECA246G0184 Erigeron canadensis HOM05D006396 ORTHO05D008172 4.8e-85 318.5 192 87.0
THA.LOC104825656 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 4.8e-85 318.5 268 65.7
TPR.G15411 Trifolium pratense HOM05D006396 ORTHO05D008172 6.2e-85 318.2 270 67.8
MD09G1002500 Malus domestica HOM05D006396 ORTHO05D008172 1.4e-84 317.0 274 67.5
Aa31LG2G5850 Aethionema arabicum HOM05D006396 ORTHO05D008172 3.1e-84 315.8 225 74.2
Lsat_1_v5_gn_3_104821 Lactuca sativa HOM05D006396 ORTHO05D008172 5.3e-84 315.1 271 66.8
Sc03g0005260 Simmondsia chinensis HOM05D006396 ORTHO05D008172 1.2e-83 313.9 258 65.1
THA.LOC104805299 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 1.3e-82 310.5 201 79.1
CDE05G2379 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 8.4e-82 307.8 229 71.6
A06p41790 Brassica napus HOM05D006396 ORTHO05D008172 2.7e-80 302.8 263 65.8
BcaNung07107 Brassica carinata HOM05D006396 ORTHO05D008172 3.5e-80 302.4 263 65.8
C07p35740 Brassica napus HOM05D006396 ORTHO05D008172 3.5e-80 302.4 263 65.8
BolC7t44094H Brassica oleracea HOM05D006396 ORTHO05D008172 3.5e-80 302.4 225 72.4
Os11g0526200 Oryza sativa ssp. japonica HOM05D006396 ORTHO05D008172 4.6e-80 302.0 191 78.0
CARHR147730 Cardamine hirsuta HOM05D006396 ORTHO05D008172 7.9e-80 301.2 230 70.4
C02p53250 Brassica napus HOM05D006396 ORTHO05D008172 1.0e-79 300.8 259 65.6
Carub.0005s0471 Capsella rubella HOM05D006396 ORTHO05D008172 1.0e-79 300.8 223 71.7
Thhalv10004768m.g Eutrema salsugineum HOM05D006396 ORTHO05D008172 3.9e-79 298.9 264 64.4
BcaC06g31047 Brassica carinata HOM05D006396 ORTHO05D008172 8.7e-79 297.7 263 65.4
Sp2g15830 Schrenkiella parvula HOM05D006396 ORTHO05D008172 8.7e-79 297.7 226 70.8
HPP92_009800 Vanilla planifolia HOM05D006396 ORTHO05D008172 8.7e-79 297.7 185 81.6
AT3G26710 Arabidopsis thaliana HOM05D006396 ORTHO05D008172 1.1e-78 297.4 262 64.1
Zm00001eb198120 Zea mays HOM05D006396 ORTHO05D008172 1.1e-78 297.4 185 78.4
BolC2t11397H Brassica oleracea HOM05D006396 ORTHO05D008172 1.9e-78 296.6 259 64.5
AL5G15550 Arabidopsis lyrata HOM05D006396 ORTHO05D008172 2.5e-78 296.2 262 64.9
BraA02t08477Z Brassica rapa HOM05D006396 ORTHO05D008172 2.8e-77 292.7 263 64.3
Migut.L00475 Erythranthe guttata HOM05D006396 ORTHO05D008172 8.1e-77 291.2 255 64.3
Mapoly0054s0013 Marchantia polymorpha HOM05D006396 ORTHO05D008172 9.9e-75 284.3 196 70.9
EL10Ac6g13409 Beta vulgaris HOM05D006396 ORTHO05D008172 3.2e-73 279.3 273 59.3
CSS0000498 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 5.5e-73 278.5 242 66.9
SMO146G0400 Selaginella moellendorffii HOM05D006396 ORTHO05D008172 9.6e-70 267.7 188 69.7
CBR_g29738 Chara braunii HOM05D006396 ORTHO05D008172 7.6e-67 258.1 237 60.3
Pp3c2_10260 Physcomitrium patens HOM05D006396 ORTHO05D008172 1.5e-62 243.8 191 63.4
BcaC03g17380 Brassica carinata HOM05D006396 ORTHO05D008172 7.4e-62 241.5 223 62.3
Duzib147G0670 Durio zibethinus HOM05D006396 ORTHO05D008172 5.9e-59 231.9 269 53.9
FvH4_6g54310 Fragaria vesca HOM05D006396 ORTHO05D008172 2.5e-57 226.5 186 68.8
MELO3C005101.2 Cucumis melo HOM05D006396 ORTHO05D008172 3.6e-56 222.6 206 64.1
CDE05G2841 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 9.7e-54 214.5 167 70.1
PRCOL_00002489 Prasinoderma coloniale HOM05D006396 ORTHO05D008172 1.3e-50 204.1 217 50.7
SGA_v2.0_scaffold174G39277 Striga asiatica HOM05D006396 ORTHO05D008172 7.2e-49 198.4 196 57.7
Peaxi162Scf00818g00123 Petunia axillaris HOM05D006396 ORTHO05D008172 1.8e-47 193.7 110 84.5
MCO04G060 Micromonas commoda HOM05D006396 ORTHO05D008172 3.3e-46 189.5 199 50.3
SEGI_35956 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 6.3e-45 185.3 110 80.0
AagrBONN_evm.TU.Sc2ySwM_368.425 Anthoceros agrestis HOM05D006396 ORTHO05D008172 1.4e-44 184.1 133 71.4
Cre16.g662150 Chlamydomonas reinhardtii HOM05D006396 ORTHO05D008172 1.4e-36 157.5 188 46.3
FAN02G1480 Fragaria x ananassa HOM05D006396 ORTHO05D008172 5.2e-31 139.0 132 65.2
SEGI_37491 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 3.8e-26 122.9 82 73.2
BolC2t09342H Brassica oleracea HOM05D006396 ORTHO05D000401 1.4e-15 87.8 105 51.4
MD04G1090800 Malus domestica HOM05D006396 ORTHO05D008172 2.2e-13 80.5 49 77.6
BolC1t02127H Brassica oleracea HOM05D000589 ORTHO05D000401 4.9e-13 79.3 93 54.8
Psat7g159680 Pisum sativum HOM05D006396 ORTHO05D008172 8.6e-10 68.6 44 68.2
A02p34690 Brassica napus HOM05D006396 ORTHO05D008172 4.3e-09 66.2 44 70.5
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 4.0e-07 59.7 65 55.4


User provided reference genes

Program Settings