Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 1.7e-128 462.6 218 100.0
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 3.0e-106 388.7 264 70.8
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 4.4e-105 384.8 262 71.4
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 1.1e-103 380.2 266 69.5
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 5.9e-102 374.4 266 68.4
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 1.3e-101 373.2 265 66.8
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 1.7e-101 372.9 265 66.4
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 2.3e-101 372.5 264 68.2
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 3.0e-101 372.1 266 68.4
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 8.6e-101 370.5 264 65.2
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 1.5e-100 369.8 267 68.2
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 2.5e-100 369.0 262 68.7
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 4.3e-100 368.2 266 65.4
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 5.6e-100 367.9 268 67.2
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 9.5e-100 367.1 264 68.6
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 1.2e-99 366.7 258 67.8
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 1.2e-99 366.7 268 67.5
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 1.6e-99 366.3 261 67.4
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 2.1e-99 365.9 264 69.3
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 3.6e-99 365.2 264 65.5
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 1.4e-98 363.2 257 68.5
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 1.8e-98 362.8 256 69.9
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 4.0e-98 361.7 252 70.2
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 4.0e-98 361.7 264 66.7
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 4.0e-98 361.7 264 66.7
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 6.8e-98 360.9 263 67.7
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 8.9e-98 360.5 262 64.1
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 8.9e-98 360.5 271 66.4
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 1.2e-97 360.1 264 64.8
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 1.2e-97 360.1 264 64.8
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.5e-97 359.8 254 68.5
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 2.0e-97 359.4 264 65.2
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 9.8e-97 357.1 265 63.8
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 9.8e-97 357.1 253 67.2
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 2.2e-96 355.9 254 68.5
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 4.9e-96 354.8 269 65.1
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 1.9e-95 352.8 271 65.7
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 7.0e-95 350.9 262 66.0
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 2.7e-94 349.0 256 66.8
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 3.5e-94 348.6 263 65.4
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 7.8e-94 347.4 263 63.5
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 1.7e-93 346.3 266 62.4
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 3.0e-93 345.5 266 64.3
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 3.9e-93 345.1 263 64.6
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 3.9e-93 345.1 263 63.5
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 5.0e-93 344.7 260 63.8
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 6.6e-93 344.4 266 62.0
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 6.6e-93 344.4 264 62.5
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 8.6e-93 344.0 263 63.1
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 8.6e-93 344.0 264 65.2
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.1e-92 343.6 268 64.6
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 1.9e-92 342.8 264 65.2
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 3.3e-92 342.0 262 63.4
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 5.6e-92 341.3 247 66.4
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 7.3e-92 340.9 267 63.7
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 1.2e-91 340.1 253 66.0
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 2.8e-91 339.0 274 63.5
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 4.7e-91 338.2 246 67.5
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 6.2e-91 337.8 265 63.8
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 8.1e-91 337.4 264 64.4
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 1.4e-90 336.7 263 63.9
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 2.3e-90 335.9 263 63.5
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 4.0e-90 335.1 263 62.4
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 4.0e-90 335.1 263 63.1
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 5.2e-90 334.7 262 62.2
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 8.9e-90 334.0 256 63.7
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.2e-89 333.6 268 62.3
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 1.2e-89 333.6 262 61.5
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 1.2e-89 333.6 263 62.0
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 2.0e-89 332.8 261 63.2
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 2.0e-89 332.8 258 62.8
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 2.0e-89 332.8 256 63.3
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.0e-89 332.8 257 63.4
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 2.6e-89 332.4 263 61.6
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 3.4e-89 332.0 261 62.8
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 7.5e-89 330.9 257 62.6
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 7.5e-89 330.9 277 59.9
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 9.8e-89 330.5 270 61.1
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 9.8e-89 330.5 272 60.7
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 9.8e-89 330.5 263 61.2
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 9.8e-89 330.5 256 62.9
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 1.3e-88 330.1 262 63.4
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 1.3e-88 330.1 275 60.4
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 1.7e-88 329.7 256 62.1
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.2e-88 329.3 236 68.2
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 2.9e-88 328.9 256 63.3
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 3.7e-88 328.6 265 60.4
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 4.9e-88 328.2 261 62.5
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 1.4e-87 326.6 261 62.1
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 2.4e-87 325.9 254 62.2
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 3.2e-87 325.5 261 62.1
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 3.5e-86 322.0 261 60.9
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.3e-85 320.1 282 55.7
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 3.9e-85 318.5 261 60.5
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 3.9e-85 318.5 280 56.1
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 8.6e-85 317.4 269 59.1
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 8.6e-85 317.4 264 58.7
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 7.3e-84 314.3 250 61.2
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 6.2e-83 311.2 263 58.9
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 2.3e-82 309.3 269 59.1
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 1.2e-81 307.0 269 58.4
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 1.5e-81 306.6 279 56.6
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 1.1e-79 300.4 294 53.7
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 2.4e-79 299.3 250 58.8
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 3.2e-79 298.9 233 60.5
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 6.0e-78 294.7 297 54.5
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 3.0e-77 292.4 231 58.9
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 4.3e-76 288.5 270 57.0
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 1.2e-75 287.0 231 57.6
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 2.4e-74 282.7 271 53.9
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 4.4e-73 278.5 218 62.4
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 9.3e-71 270.8 231 56.3
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.6e-70 270.0 235 57.9
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 3.5e-70 268.9 227 54.6
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 4.6e-70 268.5 210 61.9
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 2.3e-69 266.2 220 57.3
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 8.7e-69 264.2 286 50.3
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 1.5e-68 263.5 222 59.0
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 7.3e-68 261.2 222 54.5
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 9.6e-68 260.8 278 49.3
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 1.2e-65 253.8 193 61.1
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 2.2e-64 249.6 222 51.4
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.8e-61 240.0 329 41.6
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.8e-59 232.6 248 50.0
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 2.9e-56 222.6 218 45.9
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.3e-53 213.8 168 66.7
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 1.8e-53 213.4 114 82.5
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 1.3e-51 207.2 164 61.6
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 2.1e-51 206.5 113 80.5
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 1.4e-50 203.8 198 49.0
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 2.6e-49 199.5 181 58.0
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 2.5e-47 193.0 114 77.2
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 4.8e-43 178.7 122 67.2
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 3.1e-42 176.0 118 70.3
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 6.9e-42 174.9 129 65.9
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 3.3e-36 156.0 93 74.2
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 7.7e-33 144.8 214 41.6
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.0e-32 144.4 106 67.9
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 1.8e-26 123.6 81 71.6
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 4.5e-25 119.0 66 81.8
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 5.9e-25 118.6 68 69.1
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 1.0e-21 107.8 94 60.6
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 2.2e-19 100.1 61 80.3
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 2.0e-17 93.6 218 30.7
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 2.6e-17 93.2 127 40.9
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 8.5e-16 88.2 56 75.0
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 1.1e-15 87.8 214 30.4
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 4.2e-15 85.9 84 51.2
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 1.7e-11 73.9 67 56.7
BolC3t14316H Brassica oleracea HOM05D001551 ORTHO05D042173 3.7e-11 72.8 111 40.5
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 1.2e-09 67.8 87 43.7


User provided reference genes

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