Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 2152.9 1135 100.0
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1812.7 1122 84.0
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1798.9 1130 82.1
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1762.7 1123 80.5
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1722.2 1130 78.6
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1705.6 1130 77.5
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1702.6 1138 76.9
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1699.5 1124 77.7
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1699.1 1126 77.5
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1693.7 1126 77.5
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1679.1 1127 76.1
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1677.5 1127 76.4
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1670.6 1135 75.0
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1667.5 1136 75.4
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1667.1 1136 75.0
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1666.7 1127 75.8
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1665.2 1127 77.2
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1662.9 1127 76.8
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1662.9 1137 74.8
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1661.7 1127 76.0
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1661.7 1130 77.1
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1659.4 1136 75.4
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1656.0 1125 76.6
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1655.6 1124 75.8
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1655.2 1132 76.3
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1654.0 1131 75.9
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1653.6 1130 75.8
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1653.3 1136 75.3
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1651.3 1130 76.7
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1649.8 1125 75.3
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1649.0 1129 75.4
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1647.9 1126 74.5
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1645.6 1126 74.5
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1642.1 1126 74.3
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1641.3 1124 73.9
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1640.2 1124 73.8
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1639.4 1129 74.3
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1637.1 1130 74.1
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1634.8 1124 73.7
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1632.1 1124 73.3
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1632.1 1123 74.4
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1627.5 1134 74.0
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1627.1 1129 74.3
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1626.7 1133 74.3
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1625.9 1127 74.5
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1625.9 1131 74.6
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1624.4 1179 72.0
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1621.3 1124 75.3
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1620.1 1132 72.4
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1620.1 1134 74.9
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1615.5 1135 73.0
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1614.4 1130 72.6
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1607.8 1099 75.2
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1606.3 1125 72.6
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1604.3 1133 72.6
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1586.6 1127 71.4
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1586.6 1144 71.6
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1566.2 1134 70.9
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1557.7 1125 71.8
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1556.6 1124 72.3
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1548.5 1127 70.7
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1539.6 1127 69.7
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1536.9 1128 69.6
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1535.0 1127 69.3
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1533.1 1129 70.9
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1527.7 1137 68.8
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1526.5 1128 69.1
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1526.1 1130 70.2
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1523.1 1127 68.8
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1519.2 1126 68.4
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1517.7 1129 68.8
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1517.3 1129 68.5
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1516.9 1129 68.6
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1516.9 1129 68.5
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1514.2 1067 72.1
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1512.3 1138 69.5
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1512.3 1024 74.9
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1507.3 1124 69.8
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1505.3 1147 68.4
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1505.3 1147 68.4
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1504.6 1125 69.2
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1504.2 1095 70.8
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1502.6 1125 68.3
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1500.7 1129 70.1
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1500.3 1009 77.3
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1490.7 1126 67.0
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1487.6 1127 67.1
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1487.6 1127 67.1
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1476.1 1126 66.7
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1468.8 1126 66.2
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1466.4 1116 68.2
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1457.2 1089 70.7
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1444.1 1070 70.3
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1435.2 1076 68.7
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1416.7 1032 70.0
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1414.1 1114 65.0
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1397.5 921 77.5
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1387.9 1127 65.5
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1372.8 1086 65.0
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1371.3 914 77.7
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1370.5 922 75.7
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1369.0 1145 63.7
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1345.9 1109 62.6
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1344.3 1125 63.3
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1246.9 887 71.0
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1212.2 821 76.2
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1202.2 928 68.1
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1112.8 791 73.5
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 0.0e+00 1094.7 1088 51.9
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 0.0e+00 1082.8 1101 51.3
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 1.1e-300 1036.9 1073 49.4
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 1.2e-291 1006.9 1082 49.4
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 1.8e-287 993.0 760 67.0
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 7.0e-287 991.1 669 75.5
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 1.4e-263 913.7 926 56.4
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 6.8e-250 868.2 602 73.8
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 1.1e-220 771.2 625 64.0
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 1.6e-219 767.3 1102 41.4
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 1.8e-157 561.2 421 72.0
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 7.3e-151 539.3 376 70.2
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 1.5e-143 515.0 435 66.0
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 1.5e-127 461.8 350 65.1
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 1.2e-97 362.5 1228 27.9
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 1.3e-96 359.0 323 62.5
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 5.0e-91 340.5 1132 27.8
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 7.4e-87 326.6 311 60.8
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 2.2e-86 325.1 342 60.5
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 5.3e-85 320.5 360 50.3
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 5.0e-67 260.8 326 46.3
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 4.0e-64 251.1 319 49.2
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 5.7e-39 167.5 151 68.9
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 2.8e-33 148.7 111 72.1
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 4.4e-31 141.4 639 22.7
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 1.7e-30 139.4 110 74.5
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 1.0e-27 130.2 86 79.1
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 7.3e-26 124.0 86 75.6
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 1.4e-21 109.8 69 68.1
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 7.1e-21 107.5 64 71.9
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 4.4e-07 61.6 87 54.0
Lj2g0025677 Lotus japonicus HOM05D005483 ORTHO05D007091 2.2e-06 59.3 79 46.8


User provided reference genes

Program Settings