Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22065 Nelumbo nucifera HOM05D007261 ORTHO05D009163 3.6e-141 505.0 269 100.0
TAR629G2200 Trochodendron aralioides HOM05D007261 ORTHO05D009163 3.4e-107 392.1 259 79.2
Dinv04437 Davidia involucrata HOM05D007261 ORTHO05D009163 2.4e-105 386.0 267 76.8
Hma1.2p1_0738F.1_g210990 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 1.7e-98 363.2 253 74.7
Manes.09G172600 Manihot esculenta HOM05D007261 ORTHO05D009163 1.4e-97 360.1 253 73.9
GSVIVG01001121001 Vitis vinifera HOM05D007261 ORTHO05D009163 4.2e-97 358.6 237 77.6
Aqoxy5G04229 Aquilegia oxysepala HOM05D007261 ORTHO05D009163 3.9e-95 352.1 244 73.4
Potri.001G070800 Populus trichocarpa HOM05D007261 ORTHO05D009163 6.7e-95 351.3 237 75.9
Rhsim12G0015700 Rhododendron simsii HOM05D007261 ORTHO05D009163 8.7e-95 350.9 248 73.4
Sabra01G0049700 Salix brachista HOM05D007261 ORTHO05D009163 1.1e-94 350.5 237 75.1
Cfa009475 Carpinus fangiana HOM05D007261 ORTHO05D009163 2.5e-94 349.4 266 69.5
CsaV3_3G043490 Cucumis sativus L. HOM05D007261 ORTHO05D009163 1.3e-93 347.1 257 73.2
Duzib264G0686 Durio zibethinus HOM05D007261 ORTHO05D009163 1.3e-93 347.1 273 68.9
PSO017G6922 Papaver somniferum HOM05D007261 ORTHO05D009163 1.3e-93 347.1 230 76.1
Prupe.1G211100 Prunus persica HOM05D007261 ORTHO05D009163 1.3e-93 347.1 244 73.0
vmacro01006 Vaccinium macrocarpon HOM05D007261 ORTHO05D009163 1.6e-93 346.7 252 72.6
Cc11_g14850 Coffea canephora HOM05D007261 ORTHO05D009163 3.6e-93 345.5 267 68.9
MELO3C026753.2 Cucumis melo HOM05D007261 ORTHO05D009163 5.3e-92 341.7 257 72.4
PSO478G2703 Papaver somniferum HOM05D007261 ORTHO05D009163 9.0e-92 340.9 230 75.2
PGR119G1620 Punica granatum HOM05D007261 ORTHO05D009163 9.0e-92 340.9 267 69.3
Cpa.g.sc38.54 Carica papaya HOM05D007261 ORTHO05D009163 2.6e-91 339.3 266 67.3
RcHm_v2.0_Chr4g0428371 Rosa chinensis HOM05D007261 ORTHO05D009163 2.6e-91 339.3 240 71.7
FvH4_4g22120 Fragaria vesca HOM05D007261 ORTHO05D009163 4.5e-91 338.6 239 72.0
FAN07G0598 Fragaria x ananassa HOM05D007261 ORTHO05D009163 5.8e-91 338.2 249 69.1
FAN12G3746 Fragaria x ananassa HOM05D007261 ORTHO05D009163 5.8e-91 338.2 239 71.1
Thecc.01G239300 Theobroma cacao HOM05D007261 ORTHO05D009163 5.8e-91 338.2 254 71.3
MD16G1145000 Malus domestica HOM05D007261 ORTHO05D009163 7.6e-91 337.8 255 69.4
CSS0010700 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 2.9e-90 335.9 252 71.8
FAN17G2458 Fragaria x ananassa HOM05D007261 ORTHO05D009163 2.9e-90 335.9 250 69.6
Hund12712 Selenicereus undatus HOM05D007261 ORTHO05D009163 2.9e-90 335.9 251 70.9
CSS0041929 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 3.8e-90 335.5 252 71.8
MD13G1134400 Malus domestica HOM05D007261 ORTHO05D009163 8.4e-90 334.3 255 68.2
Nitab4.5_0005286g0010 Nicotiana tabacum HOM05D007261 ORTHO05D009163 8.4e-90 334.3 254 69.7
QL03p048277 Quercus lobata HOM05D007261 ORTHO05D009163 1.4e-89 333.6 256 68.0
Ciclev10029098m.g Citrus clementina HOM05D007261 ORTHO05D009163 2.4e-89 332.8 236 72.9
Sed0025955 Sechium edule HOM05D007261 ORTHO05D009163 3.2e-89 332.4 257 71.2
AUR62003485 Chenopodium quinoa HOM05D007261 ORTHO05D009163 9.3e-89 330.9 263 66.2
Eucgr.J01661 Eucalyptus grandis HOM05D007261 ORTHO05D009163 9.3e-89 330.9 265 64.5
CDE05G0176 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 2.1e-88 329.7 243 68.7
Atru.chr12.1480 Acer truncatum HOM05D007261 ORTHO05D009163 7.9e-88 327.8 247 67.6
ClCG10G013090 Citrullus lanatus HOM05D007261 ORTHO05D009163 1.0e-87 327.4 257 70.8
AUR62017794 Chenopodium quinoa HOM05D007261 ORTHO05D009163 3.9e-87 325.5 258 65.5
TWI18G1332 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 3.9e-87 325.5 250 69.2
arahy.Tifrunner.gnm1.ann1.EWZS38 Arachis hypogaea HOM05D007261 ORTHO05D009163 1.5e-86 323.6 224 72.3
arahy.Tifrunner.gnm1.ann1.X3R9N8 Arachis hypogaea HOM05D007261 ORTHO05D009163 1.5e-86 323.6 224 72.3
CAN.G624.13 Capsicum annuum HOM05D007261 ORTHO05D009163 5.6e-86 321.6 261 67.0
Peaxi162Scf01167g00120 Petunia axillaris HOM05D007261 ORTHO05D009163 1.6e-85 320.1 231 71.9
Gorai.007G068700 Gossypium raimondii HOM05D007261 ORTHO05D009163 2.1e-85 319.7 236 69.5
Gohir.D11G063500 Gossypium hirsutum HOM05D007261 ORTHO05D009163 2.8e-85 319.3 236 69.5
EL10Ac6g15388 Beta vulgaris HOM05D007261 ORTHO05D009163 3.7e-85 318.9 256 66.4
PGSC0003DMG400002189 Solanum tuberosum HOM05D007261 ORTHO05D009163 4.8e-85 318.5 241 69.7
TWI36G0866 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 4.8e-85 318.5 264 65.9
Gohir.A11G059400 Gossypium hirsutum HOM05D007261 ORTHO05D009163 6.2e-85 318.2 236 69.1
HPP92_020118 Vanilla planifolia HOM05D007261 ORTHO05D009163 1.1e-84 317.4 226 71.2
Ah.03g147240 Amaranthus hybridus HOM05D007261 ORTHO05D009163 4.0e-84 315.5 258 64.3
Solyc11g040130.2 Solanum lycopersicum HOM05D007261 ORTHO05D009163 4.0e-84 315.5 240 68.8
CANSAT01G0240 Cannabis sativa HOM05D007261 ORTHO05D009163 6.9e-84 314.7 239 67.8
Oeu021934.1 Olea europaea HOM05D007261 ORTHO05D009163 1.5e-83 313.5 254 65.4
Sopen11g017340 Solanum pennellii HOM05D007261 ORTHO05D009163 2.0e-83 313.2 255 65.9
SalBow2G2703 Salvia bowleyana HOM05D007261 ORTHO05D009163 2.6e-83 312.8 289 61.2
ATR0582G128 Amborella trichopoda HOM05D007261 ORTHO05D009163 4.5e-83 312.0 263 62.4
Lj1g0023925 Lotus japonicus HOM05D007261 ORTHO05D009163 5.8e-83 311.6 224 70.5
Lalb_Chr04g0257321 Lupinus albus HOM05D007261 ORTHO05D009163 1.0e-82 310.8 228 68.9
HanXRQChr06g0175371 Helianthus annuus HOM05D007261 ORTHO05D009163 6.5e-82 308.1 229 70.3
Lsat_1_v5_gn_3_33201 Lactuca sativa HOM05D007261 ORTHO05D009163 8.4e-82 307.8 230 70.9
Phvul.008G004000 Phaseolus vulgaris HOM05D007261 ORTHO05D009163 1.1e-81 307.4 225 69.3
TPR.G9720 Trifolium pratense HOM05D007261 ORTHO05D009163 4.2e-81 305.4 225 68.9
Glyma.18G298600 Glycine max HOM05D007261 ORTHO05D009163 5.5e-81 305.1 225 70.7
ECA246G1741 Erigeron canadensis HOM05D007261 ORTHO05D009163 1.2e-80 303.9 234 67.5
Carub.0001s3543 Capsella rubella HOM05D007261 ORTHO05D009163 6.0e-80 301.6 258 61.2
Sc17g0001500 Simmondsia chinensis HOM05D007261 ORTHO05D009163 7.9e-80 301.2 193 76.7
AL1G52610 Arabidopsis lyrata HOM05D007261 ORTHO05D009163 1.8e-79 300.1 263 61.2
Migut.K01136 Erythranthe guttata HOM05D007261 ORTHO05D009163 1.8e-79 300.1 247 65.2
CARHR036160 Cardamine hirsuta HOM05D007261 ORTHO05D009163 2.3e-79 299.7 264 59.1
Ca_04086_v3 Cicer arietinum L. HOM05D007261 ORTHO05D009163 2.3e-79 299.7 246 63.8
Glyma.08G363400 Glycine max HOM05D007261 ORTHO05D009163 2.3e-79 299.7 233 67.8
Lj3A1078G18 Lonicera japonica HOM05D007261 ORTHO05D009163 2.3e-79 299.7 224 67.9
AT1G44960 Arabidopsis thaliana HOM05D007261 ORTHO05D009163 3.0e-79 299.3 263 61.2
Os11g0537300 Oryza sativa ssp. japonica HOM05D007261 ORTHO05D009163 6.7e-79 298.1 259 62.2
Psat3g206640 Pisum sativum HOM05D007261 ORTHO05D009163 6.7e-79 298.1 239 66.9
Aa31LG7G10040 Aethionema arabicum HOM05D007261 ORTHO05D009163 1.1e-78 297.4 235 63.8
Zm00001eb197910 Zea mays HOM05D007261 ORTHO05D009163 1.5e-78 297.0 259 61.0
THA.LOC104801410 Tarenaya hassleriana HOM05D007261 ORTHO05D009163 1.9e-78 296.6 254 60.2
Thhalv10011722m.g Eutrema salsugineum HOM05D007261 ORTHO05D009163 3.3e-78 295.8 260 60.0
Medtr7g006790 Medicago truncatula HOM05D007261 ORTHO05D009163 4.3e-78 295.4 254 63.0
Medtr7g006800 Medicago truncatula HOM05D007261 ORTHO05D009163 4.3e-78 295.4 254 63.0
BcaB07g33898 Brassica carinata HOM05D007261 ORTHO05D009163 2.1e-77 293.1 231 62.8
BraA10t42964Z Brassica rapa HOM05D007261 ORTHO05D009163 4.8e-77 292.0 252 59.9
Haze_12532 Corylus avellana HOM05D007261 ORTHO05D009163 4.8e-77 292.0 408 44.6
A10p07140 Brassica napus HOM05D007261 ORTHO05D009163 6.3e-77 291.6 252 59.9
C06p01120 Brassica napus HOM05D007261 ORTHO05D009163 1.4e-76 290.4 232 62.5
BolC6t35245H Brassica oleracea HOM05D007261 ORTHO05D009163 5.3e-76 288.5 243 60.9
Sp1g33800 Schrenkiella parvula HOM05D007261 ORTHO05D009163 5.9e-75 285.0 259 57.5
VMungo1383G1401 Vigna mungo HOM05D007261 ORTHO05D009163 3.2e-73 279.3 215 67.4
unitig_26.g10437 Utricularia gibba HOM05D000361 ORTHO05D007482 1.6e-72 276.9 253 60.1
CiPaw.05G097700 Carya illinoinensis HOM05D007261 ORTHO05D009163 2.5e-70 269.6 255 60.8
SEGI_21849 Sequoiadendron giganteum HOM05D007261 ORTHO05D009163 3.8e-66 255.8 194 63.9
AagrBONN_evm.TU.Sc2ySwM_228.5286 Anthoceros agrestis HOM05D007261 ORTHO05D009163 8.5e-58 228.0 238 53.4
Pp3c19_21680 Physcomitrium patens HOM05D007261 ORTHO05D009163 8.5e-58 228.0 230 52.6
SMO351G0136 Selaginella moellendorffii HOM05D007261 ORTHO05D009163 1.1e-57 227.6 202 58.9
HPP92_020128 Vanilla planifolia HOM05D007261 ORTHO05D009163 1.6e-56 223.8 191 63.4
Mapoly0073s0041 Marchantia polymorpha HOM05D007261 ORTHO05D009163 5.7e-54 215.3 269 46.5
Nitab4.5_0002113g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007482 1.5e-49 200.7 155 70.3
BcaC08g42890 Brassica carinata HOM05D007261 ORTHO05D009163 3.8e-42 176.0 132 62.9
CBR_g44525 Chara braunii HOM05D007261 ORTHO05D009163 6.5e-42 175.3 237 43.9
CDE05G1764 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 1.9e-41 173.7 127 68.5
Potri.003G159901 Populus trichocarpa HOM05D007261 ORTHO05D009163 4.1e-36 156.0 98 76.5
Actinidia30573 Actinidia chinensis HOM05D007261 ORTHO05D009163 2.9e-34 149.8 101 71.3
Hma1.2p1_0738F.1_g211000 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 1.3e-26 124.4 98 70.4
PRCOL_00004129 Prasinoderma coloniale HOM05D007261 ORTHO05D009163 5.0e-18 95.9 267 32.6
PRCOL_00001953 Prasinoderma coloniale HOM05D005243 ORTHO05D006670 6.6e-10 68.9 195 32.3
Cre06.g262000 Chlamydomonas reinhardtii HOM05D001530 ORTHO05D003676 5.6e-09 65.9 166 28.3
HanXRQChr13g0417201 Helianthus annuus HOM05D001082 ORTHO05D001538 3.4e-06 56.6 171 28.7


User provided reference genes

Program Settings