Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22031 Nelumbo nucifera HOM05D000294 ORTHO05D000177 4.0e-21 103.6 44 100.0
Nn2g13896 Nelumbo nucifera HOM05D000294 ORTHO05D000177 1.0e-13 79.0 34 88.2
Lj2E123T2 Lonicera japonica HOM05D000294 ORTHO05D000177 1.7e-11 71.6 33 78.8
Dinv37356 Davidia involucrata HOM05D000294 ORTHO05D000177 3.7e-11 70.5 34 73.5
MSTRG.26666 Avicennia marina HOM05D000294 ORTHO05D000177 4.8e-11 70.1 34 76.5
Nn6g35174 Nelumbo nucifera HOM05D000294 ORTHO05D000177 4.8e-11 70.1 34 79.4
ECA238G0833 Erigeron canadensis HOM05D000294 ORTHO05D000177 1.1e-10 68.9 33 78.8
MD14G1097400 Malus domestica HOM05D000294 ORTHO05D000177 1.1e-10 68.9 37 67.6
HanXRQChr14g0433541 Helianthus annuus HOM05D000294 ORTHO05D000177 1.4e-10 68.6 33 75.8
SalBow3G2388 Salvia bowleyana HOM05D000294 ORTHO05D000177 2.4e-10 67.8 34 73.5
SalBow3G3844 Salvia bowleyana HOM05D000294 ORTHO05D000177 2.4e-10 67.8 34 73.5
GSVIVG01033703001 Vitis vinifera HOM05D000294 ORTHO05D000177 3.1e-10 67.4 33 78.8
Cc06_g04770 Coffea canephora HOM05D000294 ORTHO05D000177 4.1e-10 67.0 34 73.5
Prupe.7G123100 Prunus persica HOM05D000294 ORTHO05D000177 4.1e-10 67.0 34 73.5
Manes.08G016000 Manihot esculenta HOM05D000294 ORTHO05D000177 5.4e-10 66.6 33 78.8
AUR62042708 Chenopodium quinoa HOM05D000294 ORTHO05D000177 7.0e-10 66.2 34 70.6
QL07p041425 Quercus lobata HOM05D000294 ORTHO05D000177 7.0e-10 66.2 34 73.5
MSTRG.10337 Avicennia marina HOM05D000294 ORTHO05D000177 9.1e-10 65.9 33 72.7
Lalb_Chr21g0315261 Lupinus albus HOM05D000294 ORTHO05D000177 9.1e-10 65.9 34 67.6
CAN.G729.3 Capsicum annuum HOM05D000294 ORTHO05D000177 1.2e-09 65.5 33 75.8
Nitab4.5_0000725g0030 Nicotiana tabacum HOM05D000294 ORTHO05D000177 1.2e-09 65.5 33 75.8
Nitab4.5_0009839g0020 Nicotiana tabacum HOM05D000294 ORTHO05D000177 1.2e-09 65.5 33 75.8
Solyc10g085800.2 Solanum lycopersicum HOM05D000294 ORTHO05D000177 1.2e-09 65.5 33 75.8
Sopen10g035200 Solanum pennellii HOM05D000294 ORTHO05D000177 1.2e-09 65.5 33 75.8
PGSC0003DMG400008598 Solanum tuberosum HOM05D000294 ORTHO05D000177 1.2e-09 65.5 33 75.8
TAR633G2787 Trochodendron aralioides HOM05D000294 ORTHO05D000177 1.2e-09 65.5 33 72.7
Duzib168G0299 Durio zibethinus HOM05D000294 ORTHO05D000177 1.6e-09 65.1 34 73.5
Sed0020623 Sechium edule HOM05D000294 ORTHO05D000177 1.6e-09 65.1 33 75.8
unitig_27.g25389 Utricularia gibba HOM05D000294 ORTHO05D000177 1.6e-09 65.1 34 64.7
Dinv35832 Davidia involucrata HOM05D000294 ORTHO05D000177 2.0e-09 64.7 34 67.6
FvH4_6g17200 Fragaria vesca HOM05D000294 ORTHO05D000177 2.0e-09 64.7 34 70.6
FAN02G4378 Fragaria x ananassa HOM05D000294 ORTHO05D000177 2.0e-09 64.7 34 70.6
FAN05G2336 Fragaria x ananassa HOM05D000294 ORTHO05D000177 2.0e-09 64.7 34 70.6
FAN05G4086 Fragaria x ananassa HOM05D000294 ORTHO05D000177 2.0e-09 64.7 34 70.6
FAN14G3824 Fragaria x ananassa HOM05D000294 ORTHO05D000177 2.0e-09 64.7 34 70.6
HanXRQChr06g0183441 Helianthus annuus HOM05D000294 ORTHO05D000177 2.0e-09 64.7 33 72.7
Peaxi162Scf00500g00115 Petunia axillaris HOM05D000294 ORTHO05D000177 2.0e-09 64.7 33 75.8
RcHm_v2.0_Chr3g0471281 Rosa chinensis HOM05D000294 ORTHO05D000177 2.0e-09 64.7 34 70.6
Sed0003999 Sechium edule HOM05D000294 ORTHO05D000177 2.0e-09 64.7 33 75.8
Cpa.g.sc30.61 Carica papaya HOM05D000294 ORTHO05D000177 2.7e-09 64.3 34 67.6
Cpa.g.sc5.128 Carica papaya HOM05D000294 ORTHO05D000177 2.7e-09 64.3 34 67.6
Sabra06G0094000 Salix brachista HOM05D000294 ORTHO05D000177 2.7e-09 64.3 34 67.6
Duzib128G0452 Durio zibethinus HOM05D000294 ORTHO05D000177 3.5e-09 63.9 33 69.7
Lsat_1_v5_gn_2_20681 Lactuca sativa HOM05D000294 ORTHO05D000177 3.5e-09 63.9 33 72.7
Lalb_Chr02g0155441 Lupinus albus HOM05D000294 ORTHO05D000177 3.5e-09 63.9 34 64.7
Peaxi162Scf00146g00112 Petunia axillaris HOM05D000294 ORTHO05D000177 3.5e-09 63.9 33 72.7
SalBow5G4103 Salvia bowleyana HOM05D000294 ORTHO05D000177 3.5e-09 63.9 33 72.7
MSTRG.19208 Avicennia marina HOM05D000294 ORTHO05D000177 4.5e-09 63.5 33 69.7
COL.COLO4_22253 Corchorus olitorius HOM05D000294 ORTHO05D000177 4.5e-09 63.5 33 69.7
Haze_19476 Corylus avellana HOM05D000294 ORTHO05D000177 4.5e-09 63.5 34 67.6
Gohir.A07G105700 Gossypium hirsutum HOM05D000294 ORTHO05D000177 4.5e-09 63.5 33 72.7
Hma1.2p1_0547F.1_g176310 Hydrangea macrophylla HOM05D000294 ORTHO05D000177 4.5e-09 63.5 33 69.7
QL01p014706 Quercus lobata HOM05D000294 ORTHO05D000177 4.5e-09 63.5 33 69.7
vmacro08804 Vaccinium macrocarpon HOM05D000294 ORTHO05D000177 4.5e-09 63.5 33 69.7
Ciclev10012756m.g Citrus clementina HOM05D000294 ORTHO05D000177 5.9e-09 63.2 33 69.7
Duzib106G1414 Durio zibethinus HOM05D000294 ORTHO05D000177 5.9e-09 63.2 33 66.7
Migut.L01731 Erythranthe guttata HOM05D000294 ORTHO05D000177 5.9e-09 63.2 34 64.7
Gohir.A09G143200 Gossypium hirsutum HOM05D000294 ORTHO05D000177 5.9e-09 63.2 33 69.7
Gohir.D07G109700 Gossypium hirsutum HOM05D000294 ORTHO05D000177 5.9e-09 63.2 33 72.7
Gohir.D09G139400 Gossypium hirsutum HOM05D000294 ORTHO05D000177 5.9e-09 63.2 33 69.7
Gorai.001G117900 Gossypium raimondii HOM05D000294 ORTHO05D000177 5.9e-09 63.2 33 72.7
Gorai.006G159900 Gossypium raimondii HOM05D000294 ORTHO05D000177 5.9e-09 63.2 33 69.7
Thecc.09G296100 Theobroma cacao HOM05D000294 ORTHO05D000177 5.9e-09 63.2 33 72.7
TPR.G9894 Trifolium pratense HOM05D000294 ORTHO05D000177 5.9e-09 63.2 34 64.7
CsaV3_3G036480 Cucumis sativus L. HOM05D000294 ORTHO05D000177 7.7e-09 62.8 33 75.8
Oeu045243.1 Olea europaea HOM05D000294 ORTHO05D000177 7.7e-09 62.8 33 69.7
PSO017G5418 Papaver somniferum HOM05D000294 ORTHO05D000177 7.7e-09 62.8 33 66.7
PSO063G5032 Papaver somniferum HOM05D000294 ORTHO05D000177 7.7e-09 62.8 33 66.7
PSO339G1731 Papaver somniferum HOM05D000294 ORTHO05D000177 7.7e-09 62.8 33 66.7
Thecc.05G075400 Theobroma cacao HOM05D000294 ORTHO05D000177 7.7e-09 62.8 33 66.7
EL10Ac7g16704 Beta vulgaris HOM05D000294 ORTHO05D000177 1.0e-08 62.4 34 67.6
ClCG10G019660 Citrullus lanatus HOM05D000294 ORTHO05D000177 1.0e-08 62.4 33 75.8
MELO3C009406.2 Cucumis melo HOM05D000294 ORTHO05D000177 1.0e-08 62.4 33 75.8
FvH4_3g30410 Fragaria vesca HOM05D000294 ORTHO05D000177 1.0e-08 62.4 35 74.3
FAN11G1202 Fragaria x ananassa HOM05D000294 ORTHO05D000177 1.0e-08 62.4 35 74.3
Gohir.A04G068500 Gossypium hirsutum HOM05D000294 ORTHO05D000177 1.0e-08 62.4 33 66.7
Gohir.D04G107000 Gossypium hirsutum HOM05D000294 ORTHO05D000177 1.0e-08 62.4 33 66.7
Gorai.009G411100 Gossypium raimondii HOM05D000294 ORTHO05D000177 1.0e-08 62.4 33 66.7
Phvul.007G226200 Phaseolus vulgaris HOM05D000294 ORTHO05D000177 1.0e-08 62.4 34 64.7
Potri.006G119400 Populus trichocarpa HOM05D000294 ORTHO05D000177 1.0e-08 62.4 33 69.7
Prupe.6G114500 Prunus persica HOM05D000294 ORTHO05D000177 1.0e-08 62.4 33 72.7
Eucgr.B03915 Eucalyptus grandis HOM05D000294 ORTHO05D000177 1.3e-08 62.0 34 67.6
Lj5g0005401 Lotus japonicus HOM05D000294 ORTHO05D000177 1.3e-08 62.0 33 66.7
Oeu023987.1 Olea europaea HOM05D000294 ORTHO05D000177 1.3e-08 62.0 33 66.7
Potri.016G097100 Populus trichocarpa HOM05D000294 ORTHO05D000177 1.3e-08 62.0 34 64.7
SGA_v2.0_scaffold40G15449 Striga asiatica HOM05D000294 ORTHO05D000177 1.3e-08 62.0 33 69.7
CDE06G1405 Ceratophyllum demersum HOM05D000294 ORTHO05D000177 1.7e-08 61.6 34 64.7
PGR004G0796 Punica granatum HOM05D000294 ORTHO05D000177 1.7e-08 61.6 33 69.7
TWI74G0192 Tripterygium wilfordii HOM05D000294 ORTHO05D000177 1.7e-08 61.6 33 66.7
Duzib170G0442 Durio zibethinus HOM05D000294 ORTHO05D000177 2.2e-08 61.2 33 69.7
Migut.J00475 Erythranthe guttata HOM05D000294 ORTHO05D000177 2.2e-08 61.2 33 66.7
HanXRQChr01g0028221 Helianthus annuus HOM05D000294 ORTHO05D000177 2.2e-08 61.2 33 66.7
MD12G1103000 Malus domestica HOM05D000294 ORTHO05D000177 2.2e-08 61.2 34 67.6
RcHm_v2.0_Chr5g0056371 Rosa chinensis HOM05D000294 ORTHO05D000177 2.2e-08 61.2 33 72.7
VMungo1127G1917 Vigna mungo HOM05D000294 ORTHO05D000177 2.2e-08 61.2 34 64.7
Actinidia32471 Actinidia chinensis HOM05D000294 ORTHO05D000177 2.9e-08 60.8 33 66.7
CiPaw.09G005000 Carya illinoinensis HOM05D000294 ORTHO05D000177 2.9e-08 60.8 34 64.7
Ciclev10030107m.g Citrus clementina HOM05D000294 ORTHO05D000177 2.9e-08 60.8 34 64.7
FAN09G0898 Fragaria x ananassa HOM05D000294 ORTHO05D000177 2.9e-08 60.8 34 67.6
Manes.11G153600 Manihot esculenta HOM05D000294 ORTHO05D000177 2.9e-08 60.8 34 64.7
Aqoxy2G01601 Aquilegia oxysepala HOM05D000294 ORTHO05D000177 3.8e-08 60.5 35 68.6
CiPaw.10G002400 Carya illinoinensis HOM05D000294 ORTHO05D000177 3.8e-08 60.5 35 65.7
DCAR_015017 Daucus carota HOM05D000294 ORTHO05D000177 3.8e-08 60.5 34 64.7
PSO063G3440 Papaver somniferum HOM05D000294 ORTHO05D000177 3.8e-08 60.5 33 63.6
Psat6g077040 Pisum sativum HOM05D000294 ORTHO05D000177 3.8e-08 60.5 33 63.6
Potri.001G212400 Populus trichocarpa HOM05D000294 ORTHO05D000177 3.8e-08 60.5 33 63.6
Glyma.10G063200 Glycine max HOM05D000294 ORTHO05D000177 5.0e-08 60.1 34 61.8
Actinidia31309 Actinidia chinensis HOM05D000294 ORTHO05D000177 6.5e-08 59.7 33 66.7
FAN21G3905 Fragaria x ananassa HOM05D000294 ORTHO05D000177 6.5e-08 59.7 35 71.4
Glyma.13G147800 Glycine max HOM05D000294 ORTHO05D000177 6.5e-08 59.7 34 61.8
Manes.09G048606 Manihot esculenta HOM05D000294 ORTHO05D000177 6.5e-08 59.7 33 69.7
Phvul.011G087600 Phaseolus vulgaris HOM05D000294 ORTHO05D000177 6.5e-08 59.7 34 61.8
Potri.009G003200 Populus trichocarpa HOM05D000294 ORTHO05D000177 6.5e-08 59.7 33 63.6
Sabra04G0148400 Salix brachista HOM05D000294 ORTHO05D000177 6.5e-08 59.7 34 64.7
Hund13609 Selenicereus undatus HOM05D000294 ORTHO05D000177 6.5e-08 59.7 34 64.7
CARHR120640 Cardamine hirsuta HOM05D000294 ORTHO05D000177 8.5e-08 59.3 33 66.7
Lsat_1_v5_gn_1_52700 Lactuca sativa HOM05D000294 ORTHO05D000177 8.5e-08 59.3 33 66.7
Glyma.03G188000 Glycine max HOM05D000294 ORTHO05D000177 1.1e-07 58.9 33 60.6
Lj1g0003860 Lotus japonicus HOM05D000294 ORTHO05D000177 1.1e-07 58.9 35 62.9
Sc20g0005770 Simmondsia chinensis HOM05D000294 ORTHO05D000177 1.1e-07 58.9 33 66.7
CSS0010353 Camellia sinensis var. sinensis HOM05D000294 ORTHO05D000177 1.5e-07 58.5 34 67.6
Ca_11601_v3 Cicer arietinum L. HOM05D000294 ORTHO05D000177 1.9e-07 58.2 31 64.5
Lalb_Chr03g0027801 Lupinus albus HOM05D000294 ORTHO05D000177 1.9e-07 58.2 34 58.8
MBI18_g14885_MAGBIO Magnolia biondii HOM05D000294 ORTHO05D000177 1.9e-07 58.2 33 66.7
MBI18_g19689_MAGBIO Magnolia biondii HOM05D000294 ORTHO05D000177 1.9e-07 58.2 33 66.7
Medtr1g062160 Medicago truncatula HOM05D000294 ORTHO05D000177 1.9e-07 58.2 33 63.6
VMungo0720G1924 Vigna mungo HOM05D000294 ORTHO05D000177 1.9e-07 58.2 35 62.9
VMungo1383G1530 Vigna mungo HOM05D000294 ORTHO05D000177 1.9e-07 58.2 33 60.6
CSS0032945 Camellia sinensis var. sinensis HOM05D000294 ORTHO05D000177 2.5e-07 57.8 34 67.6
CSS0039810 Camellia sinensis var. sinensis HOM05D000294 ORTHO05D000177 3.2e-07 57.4 34 64.7
CANSAT11G1335 Cannabis sativa HOM05D000294 ORTHO05D000177 3.2e-07 57.4 42 54.8
Haze_23517 Corylus avellana HOM05D000294 ORTHO05D000177 4.2e-07 57.0 32 62.5
Sp4g10750 Schrenkiella parvula HOM05D000294 ORTHO05D000177 4.2e-07 57.0 33 63.6
arahy.Tifrunner.gnm1.ann1.ZTQN5A Arachis hypogaea HOM05D000294 ORTHO05D000177 5.5e-07 56.6 35 57.1
Eucgr.A01594 Eucalyptus grandis HOM05D000294 ORTHO05D000177 5.5e-07 56.6 34 67.6
AL4G22310 Arabidopsis lyrata HOM05D000294 ORTHO05D000177 7.2e-07 56.2 33 63.6
AT2G27930 Arabidopsis thaliana HOM05D000294 ORTHO05D000177 7.2e-07 56.2 33 63.6
THA.LOC104815737 Tarenaya hassleriana HOM05D000294 ORTHO05D000177 9.4e-07 55.8 33 60.6
arahy.Tifrunner.gnm1.ann1.728DYV Arachis hypogaea HOM05D000294 ORTHO05D000177 1.2e-06 55.5 34 58.8
MD11G1151300 Malus domestica HOM05D000294 ORTHO05D000177 1.2e-06 55.5 33 63.6
PSO339G3540 Papaver somniferum HOM05D000294 ORTHO05D000177 1.2e-06 55.5 34 67.6
PSO801G0793 Papaver somniferum HOM05D000294 ORTHO05D000177 1.2e-06 55.5 34 67.6
SEGI_04986 Sequoiadendron giganteum HOM05D000294 ORTHO05D000177 1.2e-06 55.5 35 57.1
TWI79G0098 Tripterygium wilfordii HOM05D000294 ORTHO05D000177 1.6e-06 55.1 34 55.9
arahy.Tifrunner.gnm1.ann1.ASKZ5D Arachis hypogaea HOM05D000294 ORTHO05D000177 2.1e-06 54.7 41 53.7
arahy.Tifrunner.gnm1.ann1.ES7II1 Arachis hypogaea HOM05D000294 ORTHO05D000177 2.1e-06 54.7 41 53.7
CDE08G0286 Ceratophyllum demersum HOM05D000294 ORTHO05D000177 2.1e-06 54.7 33 54.5
ClCG01G013970 Citrullus lanatus HOM05D000294 ORTHO05D000177 2.1e-06 54.7 34 58.8
Thhalv10017279m.g Eutrema salsugineum HOM05D000294 ORTHO05D000177 2.1e-06 54.7 33 60.6
THA.LOC104826397 Tarenaya hassleriana HOM05D000294 ORTHO05D000177 2.1e-06 54.7 33 57.6
SGA_v2.0_scaffold224G42917 Striga asiatica HOM05D000294 ORTHO05D000177 2.7e-06 54.3 34 55.9
CsaV3_1G014280 Cucumis sativus L. HOM05D000294 ORTHO05D000177 3.6e-06 53.9 35 60.0
Carub.0008s0121 Capsella rubella HOM05D000294 ORTHO05D000177 4.7e-06 53.5 32 62.5
CiPaw.14G105900 Carya illinoinensis HOM05D000294 ORTHO05D000177 4.7e-06 53.5 35 62.9
Lj3g0004199 Lotus japonicus HOM05D000294 ORTHO05D000177 4.7e-06 53.5 35 62.9
unitig_578.g15780 Utricularia gibba HOM05D000294 ORTHO05D000177 4.7e-06 53.5 33 51.5
unitig_8.g4370 Utricularia gibba HOM05D000294 ORTHO05D000177 6.1e-06 53.1 33 54.5
Aqoxy6G03056 Aquilegia oxysepala HOM05D000294 ORTHO05D000177 8.0e-06 52.8 32 62.5
Carub.0004s0866 Capsella rubella HOM05D000294 ORTHO05D000177 8.0e-06 52.8 33 57.6


User provided reference genes

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