Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 5.0e-54 214.2 106 100.0
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 3.7e-25 118.2 99 62.6
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 8.3e-25 117.1 97 66.0
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 1.2e-23 113.2 99 60.6
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 6.0e-23 110.9 99 62.6
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 3.0e-22 108.6 78 74.4
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 6.6e-22 107.5 97 58.8
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 4.3e-21 104.8 100 62.0
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 7.3e-21 104.0 95 58.9
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 7.3e-21 104.0 102 56.9
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 9.5e-21 103.6 97 57.7
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 1.6e-20 102.8 106 52.8
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 4.7e-20 101.3 106 58.5
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 4.7e-20 101.3 90 60.0
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 6.2e-20 100.9 91 62.6
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 1.8e-19 99.4 80 67.5
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 1.8e-19 99.4 101 53.5
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 4.0e-19 98.2 98 62.2
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 4.0e-19 98.2 90 57.8
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 4.0e-19 98.2 96 56.2
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 4.0e-19 98.2 89 58.4
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 5.2e-19 97.8 100 58.0
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 5.2e-19 97.8 98 62.2
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 6.8e-19 97.4 109 50.5
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 8.9e-19 97.1 102 54.9
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.2e-18 96.7 80 67.5
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 2.0e-18 95.9 107 51.4
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.0e-18 95.9 98 61.2
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 2.6e-18 95.5 94 61.7
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 2.6e-18 95.5 79 65.8
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 2.6e-18 95.5 80 66.2
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 3.4e-18 95.1 96 55.2
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 4.4e-18 94.7 81 69.1
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 4.4e-18 94.7 107 53.3
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.3e-17 93.2 99 56.6
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.3e-17 93.2 85 57.6
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 2.2e-17 92.4 81 56.8
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 2.9e-17 92.0 88 55.7
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 2.9e-17 92.0 103 49.5
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 3.7e-17 91.7 91 59.3
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 3.7e-17 91.7 80 60.0
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 3.7e-17 91.7 90 56.7
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 3.7e-17 91.7 105 52.4
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 3.7e-17 91.7 105 52.4
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 3.7e-17 91.7 105 52.4
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 4.9e-17 91.3 86 57.0
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 4.9e-17 91.3 106 49.1
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 4.9e-17 91.3 106 49.1
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 4.9e-17 91.3 103 52.4
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 4.9e-17 91.3 93 50.5
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 8.3e-17 90.5 88 54.5
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 8.3e-17 90.5 88 55.7
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 8.3e-17 90.5 110 51.8
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 1.1e-16 90.1 81 58.0
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.1e-16 90.1 102 53.9
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.1e-16 90.1 102 53.9
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 1.4e-16 89.7 99 50.5
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.4e-16 89.0 98 53.1
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 2.4e-16 89.0 90 51.1
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 3.2e-16 88.6 89 53.9
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 3.2e-16 88.6 106 50.9
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 3.2e-16 88.6 77 64.9
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 4.1e-16 88.2 74 62.2
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 4.1e-16 88.2 68 63.2
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 7.1e-16 87.4 99 50.5
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 7.1e-16 87.4 89 55.1
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 9.2e-16 87.0 102 52.9
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 9.2e-16 87.0 100 50.0
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 9.2e-16 87.0 110 50.0
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 1.2e-15 86.7 83 55.4
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 1.2e-15 86.7 92 54.3
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 1.2e-15 86.7 88 59.1
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 1.6e-15 86.3 109 45.0
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 2.1e-15 85.9 76 60.5
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 2.7e-15 85.5 102 46.1
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 3.5e-15 85.1 94 55.3
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 4.6e-15 84.7 91 53.8
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 4.6e-15 84.7 88 54.5
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 4.6e-15 84.7 92 55.4
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 4.6e-15 84.7 83 55.4
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 7.8e-15 84.0 92 53.3
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 7.8e-15 84.0 90 53.3
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 1.3e-14 83.2 112 47.3
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 1.7e-14 82.8 82 53.7
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.7e-14 82.8 101 50.5
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 2.3e-14 82.4 94 48.9
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 2.3e-14 82.4 79 51.9
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 2.3e-14 82.4 84 53.6
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 2.3e-14 82.4 90 53.3
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 5.1e-14 81.3 87 54.0
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 6.6e-14 80.9 108 48.1
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 8.6e-14 80.5 108 48.1
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 8.6e-14 80.5 66 57.6
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 1.1e-13 80.1 67 61.2
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 1.5e-13 79.7 83 56.6
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 1.9e-13 79.3 93 49.5
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 1.9e-13 79.3 75 53.3
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 1.9e-13 79.3 98 48.0
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 2.5e-13 79.0 93 51.6
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 2.5e-13 79.0 85 54.1
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 4.3e-13 78.2 92 47.8
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 4.3e-13 78.2 102 50.0
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 4.3e-13 78.2 91 48.4
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 4.3e-13 78.2 108 42.6
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 5.6e-13 77.8 95 47.4
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 5.6e-13 77.8 93 44.1
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 7.3e-13 77.4 109 48.6
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 9.5e-13 77.0 93 48.4
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 9.5e-13 77.0 98 56.1
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 2.8e-12 75.5 74 51.4
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.8e-12 75.5 101 48.5
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 2.8e-12 75.5 99 45.5
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 3.6e-12 75.1 81 54.3
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 4.7e-12 74.7 77 57.1
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 1.1e-11 73.6 84 53.6
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 2.3e-11 72.4 84 53.6
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 3.1e-11 72.0 104 48.1
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 5.2e-11 71.2 84 52.4
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 8.9e-11 70.5 77 55.8
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 8.9e-11 70.5 100 40.0
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.5e-10 69.7 84 53.6
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.0e-10 69.3 59 61.0
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 2.0e-10 69.3 87 47.1
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 2.6e-10 68.9 93 40.9
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 3.4e-10 68.6 58 56.9
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 5.8e-10 67.8 89 41.6
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 5.8e-10 67.8 95 42.1
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 5.8e-10 67.8 87 46.0
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 5.8e-10 67.8 97 47.4
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 7.6e-10 67.4 79 44.3
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 7.6e-10 67.4 78 47.4
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 7.6e-10 67.4 78 47.4
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.7e-09 66.2 83 49.4
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 2.9e-09 65.5 75 52.0
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 3.8e-09 65.1 80 41.2
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 3.8e-09 65.1 68 54.4
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 4.9e-09 64.7 77 45.5
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 4.9e-09 64.7 53 62.3
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 4.9e-09 64.7 80 42.5
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 6.4e-09 64.3 86 51.2
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 8.4e-09 63.9 85 44.7
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 8.4e-09 63.9 85 44.7
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 1.1e-08 63.5 91 42.9
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 1.1e-08 63.5 91 42.9
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 1.4e-08 63.2 64 48.4
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 1.6e-07 59.7 75 52.0
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 2.7e-07 58.9 76 43.4


User provided reference genes

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