Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 1.5e-170 602.8 323 100.0
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 1.4e-120 436.8 301 77.7
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 2.4e-115 419.5 333 69.1
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 1.5e-114 416.8 321 72.3
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 2.9e-113 412.5 262 79.8
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 2.9e-113 412.5 277 78.3
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 1.9e-112 409.8 260 81.5
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 3.2e-112 409.1 314 72.0
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 7.2e-112 407.9 257 81.3
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 2.1e-111 406.4 262 78.6
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 3.6e-111 405.6 268 78.4
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 3.6e-111 405.6 322 70.8
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 7.9e-111 404.4 258 82.2
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 1.0e-110 404.1 306 71.6
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 1.4e-110 403.7 322 68.9
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 1.8e-110 403.3 295 73.6
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 3.0e-110 402.5 314 70.4
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 3.0e-110 402.5 317 70.3
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 6.7e-110 401.4 320 68.8
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 8.8e-110 401.0 296 72.0
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 1.1e-109 400.6 315 69.2
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 1.5e-109 400.2 313 70.3
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 1.5e-109 400.2 261 81.2
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 2.0e-109 399.8 261 81.6
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 2.6e-109 399.4 259 81.9
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 2.6e-109 399.4 263 79.5
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 3.3e-109 399.1 304 72.4
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 3.3e-109 399.1 304 72.4
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 3.3e-109 399.1 282 74.1
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 4.4e-109 398.7 297 71.7
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 4.4e-109 398.7 262 78.6
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 5.7e-109 398.3 317 68.5
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 5.7e-109 398.3 268 77.2
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 5.7e-109 398.3 260 81.2
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 9.7e-109 397.5 318 69.5
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 1.3e-108 397.1 261 79.7
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.8e-108 396.0 307 70.4
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 2.8e-108 396.0 294 71.4
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 3.7e-108 395.6 260 79.6
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 4.8e-108 395.2 303 70.6
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 4.8e-108 395.2 319 68.0
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 4.8e-108 395.2 263 76.4
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 4.8e-108 395.2 343 65.0
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 6.3e-108 394.8 259 79.5
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 6.3e-108 394.8 323 69.3
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 8.2e-108 394.4 260 78.1
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 1.1e-107 394.0 315 68.6
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 1.4e-107 393.7 259 78.8
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 1.8e-107 393.3 304 71.4
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 1.8e-107 393.3 325 68.0
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 3.1e-107 392.5 279 74.6
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 3.1e-107 392.5 259 79.2
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 5.3e-107 391.7 259 78.8
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 5.3e-107 391.7 320 67.2
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 5.3e-107 391.7 310 70.6
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 7.0e-107 391.3 288 72.6
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 7.0e-107 391.3 311 68.8
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 9.1e-107 391.0 321 67.6
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 1.2e-106 390.6 266 74.8
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 1.6e-106 390.2 259 78.0
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 2.0e-106 389.8 288 70.5
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 2.0e-106 389.8 258 79.8
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 2.6e-106 389.4 317 67.2
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 3.5e-106 389.0 269 76.2
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 5.9e-106 388.3 262 76.7
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 5.9e-106 388.3 303 68.6
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 7.7e-106 387.9 266 74.8
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 7.7e-106 387.9 311 67.5
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 7.7e-106 387.9 315 67.0
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 1.0e-105 387.5 288 70.1
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 1.0e-105 387.5 257 79.0
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 1.7e-105 386.7 260 77.7
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 1.7e-105 386.7 322 66.8
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 2.2e-105 386.3 266 74.1
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 2.9e-105 386.0 309 70.2
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 2.9e-105 386.0 257 80.2
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 6.5e-105 384.8 312 66.3
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 8.5e-105 384.4 263 75.3
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 1.5e-104 383.6 316 66.5
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 2.5e-104 382.9 263 76.8
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 7.2e-104 381.3 291 70.1
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 9.4e-104 380.9 260 76.2
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 9.4e-104 380.9 260 76.5
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 2.1e-103 379.8 276 71.7
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 3.6e-103 379.0 368 60.9
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 4.7e-103 378.6 269 73.2
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.5e-101 373.6 298 69.5
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 3.5e-98 362.5 386 57.5
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 7.7e-98 361.3 383 56.4
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 1.0e-97 360.9 273 68.5
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 1.3e-97 360.5 236 79.7
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 2.7e-95 352.8 258 72.5
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 4.7e-95 352.1 250 72.0
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 8.0e-95 351.3 305 64.3
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 6.3e-92 341.7 253 70.8
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 7.0e-91 338.2 256 66.4
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 1.6e-90 337.0 225 77.3
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 1.6e-90 337.0 225 77.3
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 2.7e-90 336.3 298 62.8
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 1.7e-89 333.6 419 49.6
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 9.8e-85 317.8 236 74.2
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 2.3e-81 306.6 252 60.3
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 2.3e-81 306.6 249 70.3
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 4.3e-80 302.4 198 80.3
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 2.1e-79 300.1 248 68.1
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 1.0e-78 297.7 259 67.2
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 3.4e-77 292.7 199 77.9
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 2.2e-76 290.0 285 57.9
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 1.8e-75 287.0 266 56.4
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 4.6e-74 282.3 255 58.0
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 1.9e-72 276.9 247 55.9
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 1.2e-71 274.2 180 80.0
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 2.1e-71 273.5 256 56.6
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 3.6e-71 272.7 303 53.1
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 2.0e-66 256.9 255 53.7
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 1.4e-62 244.2 198 69.2
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 5.6e-56 222.2 240 61.7
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 1.8e-54 217.2 303 44.2
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 2.6e-53 213.4 279 46.6
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 4.4e-53 212.6 207 60.4
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 5.4e-51 205.7 217 56.2
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 1.2e-50 204.5 240 49.6
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 4.4e-45 186.0 302 41.4
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 1.3e-44 184.5 208 53.4
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 1.1e-24 118.2 90 74.4
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 2.4e-22 110.5 73 78.1
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 8.4e-20 102.1 143 48.3
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 3.2e-19 100.1 72 72.2
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 1.8e-14 84.3 52 86.5
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 2.4e-14 84.0 57 77.2
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 1.5e-13 81.3 63 57.1
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 2.5e-08 63.9 42 71.4
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 9.7e-08 62.0 48 58.3
BcaB02g07173 Brassica carinata HOM05D005699 ORTHO05D091938 2.8e-07 60.5 87 46.0
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 4.8e-07 59.7 48 56.2
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 4.8e-07 59.7 208 30.8
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 1.4e-06 58.2 40 65.0


User provided reference genes

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