Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 2743.0 1406 100.0
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1660.6 1414 62.1
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1649.0 1400 62.7
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1596.3 1415 60.1
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1589.3 1388 61.7
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1583.2 1387 60.6
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1565.8 1374 60.7
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1560.4 1386 59.5
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1556.6 1399 60.5
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1552.3 1386 59.3
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1548.1 1386 59.4
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1544.6 1386 59.2
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1543.1 1441 57.7
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1531.9 1336 60.1
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1525.0 1369 59.6
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1519.6 1379 59.2
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1516.1 1369 59.5
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1510.0 1398 58.7
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1510.0 1405 57.6
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1506.9 1374 59.0
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1492.2 1345 59.3
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1477.2 1408 57.2
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1468.8 1410 57.3
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1466.8 1392 56.0
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1453.3 1398 58.3
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1450.6 1386 57.6
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1445.6 1380 57.0
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1444.5 1374 56.9
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1435.2 1401 55.9
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1407.9 1380 55.2
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1407.1 1373 56.0
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1406.7 1334 57.9
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1402.9 1470 53.6
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 0.0e+00 1401.7 1379 53.7
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1397.1 1374 55.2
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1394.8 1429 54.0
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1392.5 1220 60.2
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1391.7 1395 54.9
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1390.6 1389 54.2
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1387.5 1385 54.7
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1385.2 1372 55.2
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1380.9 1423 53.7
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 1379.8 1392 53.9
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 1378.6 1384 54.5
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 1376.7 1393 54.0
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1374.8 1401 54.2
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1371.3 1412 52.8
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1369.4 1378 55.3
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 1368.2 1391 54.0
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1366.7 1479 51.9
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1364.0 1378 54.4
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1358.2 1376 54.5
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 1357.8 1379 54.2
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 1357.8 1405 53.3
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1348.2 1389 52.7
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1345.9 1374 53.9
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1340.5 1399 52.7
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1338.2 1386 53.5
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1334.7 1432 51.1
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 1331.6 1385 53.3
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1330.1 1411 53.8
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1328.2 1376 54.2
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1325.8 1391 52.6
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1325.1 1401 52.7
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1321.6 1376 52.3
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1315.8 1390 53.0
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1304.3 1399 52.9
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1302.7 1399 52.9
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 1299.6 1400 52.5
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 1297.7 1401 52.8
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1287.3 1399 52.4
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1282.7 1140 60.4
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1258.8 1401 50.4
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1251.9 1556 47.4
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1247.6 1376 51.6
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 1200.3 1381 50.5
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1187.9 1604 45.2
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 0.0e+00 1157.5 1387 48.0
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 0.0e+00 1114.8 1142 54.2
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 0.0e+00 1100.1 1167 52.5
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 0.0e+00 1082.0 848 67.7
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 0.0e+00 1078.2 989 59.0
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 3.1e-300 1035.8 1012 55.9
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 5.2e-300 1035.0 1059 53.1
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.9e-281 973.4 1048 53.0
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 2.5e-257 893.3 1377 40.2
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 3.8e-250 869.4 847 55.7
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 3.6e-240 836.3 758 57.8
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 3.3e-238 829.7 729 59.7
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 4.2e-225 786.2 1385 39.5
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 1.2e-224 784.6 844 52.4
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 6.4e-189 666.0 1435 33.3
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 7.1e-172 609.4 1424 32.2
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 3.3e-169 600.5 452 69.5
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 2.2e-165 587.8 520 59.6
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 1.5e-158 565.1 606 54.3
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 2.4e-151 541.2 450 63.3
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 3.9e-146 523.9 544 53.5
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.3e-145 520.4 669 43.5
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 3.8e-141 507.3 529 54.1
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 7.9e-131 473.0 1021 33.9
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 2.5e-129 468.0 336 68.8
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 4.1e-127 460.7 409 59.4
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 5.7e-105 387.1 481 44.1
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 7.2e-92 343.6 274 63.1
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.4e-89 334.3 475 45.7
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 5.9e-86 323.9 585 38.3
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 1.5e-84 319.3 759 33.2
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 2.0e-81 308.9 356 51.4
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 7.0e-79 300.4 400 45.2
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 9.5e-76 290.0 451 41.5
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.6e-62 246.1 163 72.4
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.3e-61 242.3 381 44.4
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.9e-55 222.6 138 76.8
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 9.3e-55 220.3 255 50.2
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 3.0e-53 215.3 230 53.0
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 3.9e-53 214.9 232 51.7
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 8.7e-53 213.8 407 40.5
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 1.5e-52 213.0 142 74.6
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 4.8e-51 208.0 177 65.5
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 1.8e-50 206.1 151 66.9
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 3.8e-48 198.4 245 44.1
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 1.1e-44 186.8 173 60.1
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 2.5e-44 185.7 1049 24.4
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 7.6e-41 174.1 257 40.1
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 6.4e-40 171.0 162 60.5
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 8.4e-40 170.6 141 62.4
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 6.9e-34 151.0 583 24.4
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 2.9e-32 145.6 204 47.1
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 1.1e-31 143.7 138 56.5
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 1.1e-26 127.1 136 47.8
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 3.1e-26 125.6 169 45.6
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 5.3e-26 124.8 502 28.7
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 5.3e-26 124.8 1201 22.9
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 3.4e-25 122.1 97 66.0
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 7.2e-23 114.4 77 68.8
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 2.5e-20 105.9 100 49.0
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 4.3e-20 105.1 282 32.6
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.6e-19 103.2 127 49.6
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 4.8e-19 101.7 86 53.5
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 6.3e-19 101.3 93 57.0
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 8.2e-19 100.9 150 40.7
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 1.5e-17 96.7 160 36.9
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 2.0e-17 96.3 111 53.2
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 7.7e-17 94.4 120 45.0
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 7.7e-17 94.4 99 54.5
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 2.2e-16 92.8 98 48.0
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 6.5e-16 91.3 69 66.7
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 7.2e-15 87.8 61 68.9
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 3.6e-14 85.5 61 67.2
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 1.4e-13 83.6 89 49.4
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.8e-13 83.2 159 40.3
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 3.9e-13 82.0 159 40.3
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 4.1e-10 72.0 73 56.2
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 3.4e-09 68.9 112 44.6
FAN06G4064 Fragaria x ananassa HOM05D016453 ORTHO05D017011 7.7e-09 67.8 112 43.8
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 7.7e-09 67.8 51 64.7
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 3.8e-08 65.5 95 43.2
Actinidia07374 Actinidia chinensis HOM05D004277 ORTHO05D005148 5.0e-08 65.1 134 34.3
Actinidia07381 Actinidia chinensis HOM05D004277 ORTHO05D005148 6.5e-08 64.7 137 34.3
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 8.5e-08 64.3 62 59.7
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.4e-07 63.5 143 29.4
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 1.4e-07 63.5 98 38.8
Zm00001eb086610 Zea mays HOM05D004277 ORTHO05D005148 2.5e-07 62.8 100 39.0
QL12p004446 Quercus lobata HOM05D004277 ORTHO05D050645 4.2e-07 62.0 66 50.0
QL04p080502 Quercus lobata HOM05D004277 ORTHO05D005148 2.7e-06 59.3 60 53.3


User provided reference genes

Program Settings