Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn3g20685 Nelumbo nucifera HOM05D000727 ORTHO05D000541 1.4e-27 125.6 62 100.0
TAR629G3183 Trochodendron aralioides HOM05D000727 ORTHO05D000541 2.7e-23 111.3 62 87.1
Nn4g26544 Nelumbo nucifera HOM05D000727 ORTHO05D000541 2.3e-22 108.2 62 88.7
TAR627G0220 Trochodendron aralioides HOM05D000727 ORTHO05D000541 3.0e-22 107.8 62 85.5
Duzib235G1433 Durio zibethinus HOM05D000727 ORTHO05D000541 1.5e-21 105.5 62 80.6
Thecc.06G153100 Theobroma cacao HOM05D000727 ORTHO05D000541 1.5e-21 105.5 62 79.0
Gohir.A10G039400 Gossypium hirsutum HOM05D000727 ORTHO05D000541 2.5e-21 104.8 62 79.0
Dinv32274 Davidia involucrata HOM05D000727 ORTHO05D000541 1.2e-20 102.4 62 82.3
Duzib160G0640 Durio zibethinus HOM05D000727 ORTHO05D000541 1.2e-20 102.4 62 77.4
Gohir.D10G040200 Gossypium hirsutum HOM05D000727 ORTHO05D000541 1.6e-20 102.1 62 77.4
Gorai.011G042300 Gossypium raimondii HOM05D000727 ORTHO05D000541 1.6e-20 102.1 62 77.4
Dinv30718 Davidia involucrata HOM05D000727 ORTHO05D000541 2.1e-20 101.7 62 80.6
Eucgr.D00306 Eucalyptus grandis HOM05D000727 ORTHO05D000541 2.8e-20 101.3 60 76.7
Haze_05566 Corylus avellana HOM05D000727 ORTHO05D000541 1.0e-19 99.4 63 77.8
Cc09_g08820 Coffea canephora HOM05D000727 ORTHO05D000541 1.4e-19 99.0 62 77.4
ClCG01G024500 Citrullus lanatus HOM05D000727 ORTHO05D000541 1.8e-19 98.6 60 80.0
Atru.chr1.2874 Acer truncatum HOM05D000727 ORTHO05D000541 2.3e-19 98.2 61 73.8
arahy.Tifrunner.gnm1.ann1.IQ8H38 Arachis hypogaea HOM05D000727 ORTHO05D000541 2.3e-19 98.2 62 77.4
arahy.Tifrunner.gnm1.ann1.JMJW5B Arachis hypogaea HOM05D000727 ORTHO05D000541 2.3e-19 98.2 62 77.4
COL.COLO4_38297 Corchorus olitorius HOM05D000727 ORTHO05D000541 2.3e-19 98.2 64 76.6
MBI07_g15282_MAGBIO Magnolia biondii HOM05D000727 ORTHO05D000541 2.3e-19 98.2 62 80.6
EL10As10g23972 Beta vulgaris HOM05D000727 ORTHO05D000541 3.1e-19 97.8 60 81.7
Manes.17G068300 Manihot esculenta HOM05D000727 ORTHO05D000541 3.1e-19 97.8 62 72.6
QL05p059002 Quercus lobata HOM05D000727 ORTHO05D000541 3.1e-19 97.8 62 75.8
Ca_30687_v3 Cicer arietinum L. HOM05D000727 ORTHO05D000541 5.2e-19 97.1 62 75.8
Ciclev10017037m.g Citrus clementina HOM05D000727 ORTHO05D000541 5.2e-19 97.1 60 76.7
Rhsim13G0194000 Rhododendron simsii HOM05D000727 ORTHO05D000541 5.2e-19 97.1 62 77.4
Manes.15G119950 Manihot esculenta HOM05D000727 ORTHO05D000541 6.8e-19 96.7 62 74.2
Peaxi162Scf01376g00015 Petunia axillaris HOM05D000727 ORTHO05D000541 6.8e-19 96.7 62 74.2
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 8.9e-19 96.3 62 71.0
CiPaw.10G093100 Carya illinoinensis HOM05D000727 ORTHO05D000541 1.5e-18 95.5 63 77.8
CiPaw.09G125900 Carya illinoinensis HOM05D000727 ORTHO05D000541 2.0e-18 95.1 58 81.0
GSVIVG01021424001 Vitis vinifera HOM05D000727 ORTHO05D000541 2.0e-18 95.1 60 73.3
Potri.004G131400 Populus trichocarpa HOM05D000727 ORTHO05D000541 2.6e-18 94.7 62 71.0
CsaV3_6G051620 Cucumis sativus L. HOM05D000727 ORTHO05D000541 3.4e-18 94.4 56 80.4
HanXRQChr15g0480191 Helianthus annuus HOM05D000727 ORTHO05D000541 4.4e-18 94.0 64 73.4
Sabra04G0086500 Salix brachista HOM05D000727 ORTHO05D000541 4.4e-18 94.0 62 71.0
Lalb_Chr07g0188681 Lupinus albus HOM05D000727 ORTHO05D000541 5.8e-18 93.6 62 69.4
TPR.G4879 Trifolium pratense HOM05D000727 ORTHO05D000541 5.8e-18 93.6 62 69.4
CAN.G588.23 Capsicum annuum HOM05D000727 ORTHO05D000541 7.5e-18 93.2 62 71.0
MD05G1286800 Malus domestica HOM05D000727 ORTHO05D000541 9.8e-18 92.8 50 86.0
Medtr4g094622 Medicago truncatula HOM05D000727 ORTHO05D000541 9.8e-18 92.8 62 71.0
Actinidia19515 Actinidia chinensis HOM05D000727 ORTHO05D000541 1.3e-17 92.4 62 75.8
Phvul.002G194900 Phaseolus vulgaris HOM05D000727 ORTHO05D000541 1.3e-17 92.4 62 71.0
Actinidia16722 Actinidia chinensis HOM05D000727 ORTHO05D000541 1.7e-17 92.0 62 72.6
MELO3C007145.2 Cucumis melo HOM05D000727 ORTHO05D000541 1.7e-17 92.0 60 75.0
Migut.M00925 Erythranthe guttata HOM05D000727 ORTHO05D000541 1.7e-17 92.0 61 72.1
PGR042G2182 Punica granatum HOM05D000727 ORTHO05D000541 1.7e-17 92.0 62 71.0
vmacro13907 Vaccinium macrocarpon HOM05D000727 ORTHO05D000541 1.7e-17 92.0 59 78.0
CDE09G0361 Ceratophyllum demersum HOM05D000727 ORTHO05D000541 2.2e-17 91.7 60 75.0
Lsat_1_v5_gn_7_30561 Lactuca sativa HOM05D000727 ORTHO05D000541 2.2e-17 91.7 62 71.0
RcHm_v2.0_Chr5g0013561 Rosa chinensis HOM05D000727 ORTHO05D000541 2.2e-17 91.7 59 67.8
TWI73G0278 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 2.2e-17 91.7 65 70.8
MD10G1264300 Malus domestica HOM05D000727 ORTHO05D000541 2.9e-17 91.3 60 73.3
Glyma.05G129000 Glycine max HOM05D000727 ORTHO05D000541 3.7e-17 90.9 62 69.4
Glyma.08G083600 Glycine max HOM05D000727 ORTHO05D000541 3.7e-17 90.9 62 69.4
Prupe.4G078100 Prunus persica HOM05D000727 ORTHO05D000541 4.9e-17 90.5 53 77.4
AUR62027603 Chenopodium quinoa HOM05D000727 ORTHO05D000541 8.3e-17 89.7 60 75.0
TWI09G1261 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 8.3e-17 89.7 63 69.8
FvH4_3g05880 Fragaria vesca HOM05D000727 ORTHO05D000541 1.1e-16 89.4 60 68.3
FAN11G3699 Fragaria x ananassa HOM05D000727 ORTHO05D000541 1.1e-16 89.4 60 68.3
Sed0017094 Sechium edule HOM05D000727 ORTHO05D000541 1.1e-16 89.4 57 75.4
Sopen02g009310 Solanum pennellii HOM05D000727 ORTHO05D000541 1.1e-16 89.4 62 71.0
FAN21G3414 Fragaria x ananassa HOM05D000727 ORTHO05D000541 1.4e-16 89.0 60 66.7
SalBow8G1768 Salvia bowleyana HOM05D000736 ORTHO05D002171 1.4e-16 89.0 64 70.3
Carub.0004s1612 Capsella rubella HOM05D000727 ORTHO05D000541 1.9e-16 88.6 62 69.4
AT2G34450 Arabidopsis thaliana HOM05D000727 ORTHO05D000541 2.4e-16 88.2 62 69.4
CANSAT35G1354 Cannabis sativa HOM05D000727 ORTHO05D000541 2.4e-16 88.2 61 70.5
FAN16G1096 Fragaria x ananassa HOM05D000727 ORTHO05D000541 2.4e-16 88.2 60 66.7
Aa31LG10G6930 Aethionema arabicum HOM05D000727 ORTHO05D000541 3.2e-16 87.8 62 67.7
THA.LOC104814287 Tarenaya hassleriana HOM05D000727 ORTHO05D000541 3.2e-16 87.8 62 71.0
Aqoxy1G01750 Aquilegia oxysepala HOM05D000727 ORTHO05D000541 4.1e-16 87.4 61 68.9
AUR62030237 Chenopodium quinoa HOM05D000727 ORTHO05D000541 4.1e-16 87.4 61 70.5
Lj4g0004315 Lotus japonicus HOM05D000727 ORTHO05D000541 4.1e-16 87.4 62 67.7
MSTRG.7474 Avicennia marina HOM05D000727 ORTHO05D000541 7.0e-16 86.7 61 70.5
C04p63780 Brassica napus HOM05D000727 ORTHO05D000541 9.2e-16 86.3 62 67.7
BolC4t27844H Brassica oleracea HOM05D000727 ORTHO05D000541 9.2e-16 86.3 62 67.7
BraA04t18141Z Brassica rapa HOM05D000727 ORTHO05D000541 9.2e-16 86.3 62 67.7
CARHR128540 Cardamine hirsuta HOM05D000727 ORTHO05D000541 9.2e-16 86.3 62 67.7
Sp4g16720 Schrenkiella parvula HOM05D000727 ORTHO05D000541 9.2e-16 86.3 62 67.7
AL4G30420 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 1.6e-15 85.5 62 67.7
SGA_v2.0_scaffold1G00155 Striga asiatica HOM05D000736 ORTHO05D002171 1.6e-15 85.5 54 75.9
BcaB06g28770 Brassica carinata HOM05D000727 ORTHO05D000541 2.0e-15 85.1 62 66.1
ATR0585G098 Amborella trichopoda HOM05D000727 ORTHO05D000541 2.7e-15 84.7 49 77.6
PSO675G7623 Papaver somniferum HOM05D000727 ORTHO05D000541 3.5e-15 84.3 57 73.7
Os01g0666200 Oryza sativa ssp. japonica HOM05D000727 ORTHO05D000541 4.6e-15 84.0 60 66.7
PSO541G1611 Papaver somniferum HOM05D000727 ORTHO05D000541 6.0e-15 83.6 62 71.0
Sabra19G0060100 Salix brachista HOM05D000727 ORTHO05D000541 6.0e-15 83.6 45 80.0
Sc05g0006400 Simmondsia chinensis HOM05D000727 ORTHO05D000541 6.0e-15 83.6 55 70.9
unitig_26.g10106 Utricularia gibba HOM05D000736 ORTHO05D002171 7.8e-15 83.2 49 75.5
Thhalv10017360m.g Eutrema salsugineum HOM05D000727 ORTHO05D000541 1.7e-14 82.0 59 67.8
Zm00001eb157450 Zea mays HOM05D000727 ORTHO05D000541 8.6e-14 79.7 47 76.6
HPP92_023289 Vanilla planifolia HOM05D000727 ORTHO05D000541 1.1e-13 79.3 45 80.0
A04p26370 Brassica napus HOM05D000727 ORTHO05D000541 2.5e-13 78.2 44 79.5
DCAR_027945 Daucus carota HOM05D000727 ORTHO05D000541 4.4e-10 67.4 132 36.4
Nitab4.5_0000165g0170 Nicotiana tabacum HOM05D000727 ORTHO05D000541 3.7e-09 64.3 59 57.6
Oeu042440.2 Olea europaea HOM05D000727 ORTHO05D000541 2.4e-08 61.6 102 37.3
Cfa000965 Carpinus fangiana HOM05D000727 ORTHO05D000541 7.1e-08 60.1 45 68.9
SGA_v2.0_scaffold333G49000 Striga asiatica HOM05D000736 ORTHO05D002171 5.1e-06 53.9 47 63.8


User provided reference genes

Program Settings