Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn3g20669 Nelumbo nucifera HOM05D006911 ORTHO05D006663 2.1e-45 185.3 90 100.0
Nn4g26517 Nelumbo nucifera HOM05D006911 ORTHO05D006663 1.3e-26 122.9 69 82.6
COL.COLO4_38300 Corchorus olitorius HOM05D006911 ORTHO05D006663 1.9e-17 92.4 72 65.3
Manes.07G101802 Manihot esculenta HOM05D006911 ORTHO05D006663 2.4e-17 92.0 72 61.1
Cfa023065 Carpinus fangiana HOM05D006911 ORTHO05D006663 4.2e-17 91.3 69 62.3
Haze_13522 Corylus avellana HOM05D006911 ORTHO05D006663 4.2e-17 91.3 69 62.3
QL05p059038 Quercus lobata HOM05D006911 ORTHO05D006663 4.2e-17 91.3 71 62.0
Thecc.06G153400 Theobroma cacao HOM05D006911 ORTHO05D006663 7.1e-17 90.5 70 67.1
Potri.004G131200 Populus trichocarpa HOM05D006911 ORTHO05D006663 2.7e-16 88.6 74 64.9
COL.COLO4_07174 Corchorus olitorius HOM05D006911 ORTHO05D006663 4.6e-16 87.8 70 60.0
Gohir.D10G040100 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.3e-15 86.3 71 66.2
Gorai.011G042200 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.3e-15 86.3 71 66.2
Potri.011G079900 Populus trichocarpa HOM05D006911 ORTHO05D006663 3.9e-15 84.7 69 62.3
FvH4_6g38520 Fragaria vesca HOM05D006911 ORTHO05D006663 1.1e-14 83.2 68 61.8
FAN02G1638 Fragaria x ananassa HOM05D006911 ORTHO05D006663 1.1e-14 83.2 68 61.8
FAN14G5866 Fragaria x ananassa HOM05D006911 ORTHO05D006663 1.1e-14 83.2 68 61.8
LjContig00049g0014504 Lotus japonicus HOM05D006911 ORTHO05D006663 1.1e-14 83.2 71 62.0
MBI10_g27413_MAGBIO Magnolia biondii HOM05D006911 ORTHO05D006663 1.1e-14 83.2 68 63.2
CSS0014266 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 1.5e-14 82.8 72 59.7
CSS0033096 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 1.5e-14 82.8 72 59.7
COL.COLO4_24713 Corchorus olitorius HOM05D006911 ORTHO05D006663 1.9e-14 82.4 57 66.7
Thecc.01G170800 Theobroma cacao HOM05D006911 ORTHO05D006663 1.9e-14 82.4 72 56.9
Duzib133G0070 Durio zibethinus HOM05D006911 ORTHO05D006663 3.3e-14 81.6 71 57.7
Gohir.A10G039300 Gossypium hirsutum HOM05D006911 ORTHO05D006663 5.6e-14 80.9 71 63.4
Gohir.D05G152400 Gossypium hirsutum HOM05D006911 ORTHO05D006663 5.6e-14 80.9 70 58.6
RcHm_v2.0_Chr2g0151771 Rosa chinensis HOM05D006911 ORTHO05D006663 5.6e-14 80.9 75 57.3
Gohir.A06G197500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 9.6e-14 80.1 74 64.9
Gohir.A05G149800 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.2e-13 79.7 70 58.6
MD09G1150000 Malus domestica HOM05D006911 ORTHO05D006663 1.6e-13 79.3 65 60.0
CiPaw.09G126200 Carya illinoinensis HOM05D006911 ORTHO05D006663 2.1e-13 79.0 68 60.3
Phvul.006G031600 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 2.8e-13 78.6 64 59.4
TWI09G0032 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 2.8e-13 78.6 69 58.0
Migut.M00927 Erythranthe guttata HOM05D006911 ORTHO05D006663 3.6e-13 78.2 57 63.2
Gohir.D06G205000 Gossypium hirsutum HOM05D006911 ORTHO05D006663 6.2e-13 77.4 74 62.2
MD05G1287000 Malus domestica HOM05D006911 ORTHO05D006663 6.2e-13 77.4 74 52.7
Manes.15G119700 Manihot esculenta HOM05D006911 ORTHO05D006663 6.2e-13 77.4 50 68.0
CSS0032663 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 1.1e-12 76.6 66 59.1
Gorai.010G239100 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.4e-12 76.3 74 62.2
Prupe.3G175200 Prunus persica HOM05D006911 ORTHO05D006663 1.4e-12 76.3 65 56.9
Medtr5g091310 Medicago truncatula HOM05D006911 ORTHO05D006663 1.8e-12 75.9 73 57.5
Oeu052383.1 Olea europaea HOM05D006911 ORTHO05D006663 1.8e-12 75.9 69 56.5
MD17G1137200 Malus domestica HOM05D006911 ORTHO05D006663 3.1e-12 75.1 65 58.5
Prupe.4G077900 Prunus persica HOM05D006911 ORTHO05D006663 3.1e-12 75.1 72 54.2
QL08p044828 Quercus lobata HOM05D006911 ORTHO05D006663 3.1e-12 75.1 68 55.9
FAN21G0769 Fragaria x ananassa HOM05D006911 ORTHO05D006663 6.9e-12 73.9 73 52.1
RcHm_v2.0_Chr5g0013541 Rosa chinensis HOM05D006911 ORTHO05D006663 6.9e-12 73.9 73 52.1
CiPaw.04G139200 Carya illinoinensis HOM05D006911 ORTHO05D006663 1.2e-11 73.2 72 58.3
Manes.17G067900 Manihot esculenta HOM05D006911 ORTHO05D006663 1.2e-11 73.2 47 70.2
TPR.G4919 Trifolium pratense HOM05D006911 ORTHO05D006663 1.2e-11 73.2 76 48.7
Gorai.009G156500 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.5e-11 72.8 66 56.1
Ciclev10017350m.g Citrus clementina HOM05D006911 ORTHO05D006663 2.6e-11 72.0 68 57.4
Potri.005G203800 Populus trichocarpa HOM05D006911 ORTHO05D006663 3.4e-11 71.6 73 50.7
Hma1.2p1_0137F.1_g062460 Hydrangea macrophylla HOM05D006911 ORTHO05D006663 4.4e-11 71.2 52 67.3
Glyma.08G308500 Glycine max HOM05D006911 ORTHO05D006663 5.8e-11 70.9 66 57.6
Gohir.D11G163600 Gossypium hirsutum HOM05D006911 ORTHO05D006663 5.8e-11 70.9 70 48.6
Gorai.007G174300 Gossypium raimondii HOM05D006911 ORTHO05D006663 5.8e-11 70.9 70 48.6
Gohir.A11G156500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 9.9e-11 70.1 67 49.3
Potri.002G058400 Populus trichocarpa HOM05D006911 ORTHO05D006663 9.9e-11 70.1 73 53.4
RcHm_v2.0_Chr7g0229651 Rosa chinensis HOM05D006911 ORTHO05D006663 9.9e-11 70.1 73 49.3
Glyma.14G029400 Glycine max HOM05D006911 ORTHO05D006663 1.7e-10 69.3 69 55.1
arahy.Tifrunner.gnm1.ann1.A53T08 Arachis hypogaea HOM05D006911 ORTHO05D006663 2.9e-10 68.6 74 50.0
Medtr4g094630 Medicago truncatula HOM05D006911 ORTHO05D006663 2.9e-10 68.6 70 51.4
Sed0027001 Sechium edule HOM05D006911 ORTHO05D006663 2.9e-10 68.6 69 52.2
arahy.Tifrunner.gnm1.ann1.M9VZ51 Arachis hypogaea HOM05D006911 ORTHO05D006663 3.8e-10 68.2 74 50.0
Medtr4g094635 Medicago truncatula HOM05D006911 ORTHO05D006663 3.8e-10 68.2 71 49.3
Cc09_g08880 Coffea canephora HOM05D006911 ORTHO05D006663 4.9e-10 67.8 55 58.2
FvH4_3g05900 Fragaria vesca HOM05D006911 ORTHO05D006663 4.9e-10 67.8 69 49.3
Manes.10G042300 Manihot esculenta HOM05D006911 ORTHO05D006663 4.9e-10 67.8 72 48.6
THA.LOC104800829 Tarenaya hassleriana HOM05D006911 ORTHO05D006663 4.9e-10 67.8 60 58.3
Ciclev10033778m.g Citrus clementina HOM05D006911 ORTHO05D006663 6.4e-10 67.4 60 51.7
SalBow7G2931 Salvia bowleyana HOM05D006911 ORTHO05D006663 6.4e-10 67.4 52 57.7
Cpa.g.sc50.102 Carica papaya HOM05D006911 ORTHO05D006663 8.4e-10 67.0 69 47.8
Phvul.008G193200 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 1.1e-09 66.6 69 55.1
SalBow6G3836 Salvia bowleyana HOM05D006911 ORTHO05D006663 1.9e-09 65.9 96 41.7
Nitab4.5_0001040g0170 Nicotiana tabacum HOM05D024954 ORTHO05D006663 3.2e-09 65.1 68 54.4
PSO541G4839 Papaver somniferum HOM05D006911 ORTHO05D006663 3.2e-09 65.1 55 60.0
PGR083G1670 Punica granatum HOM05D006911 ORTHO05D006663 5.4e-09 64.3 74 55.4
ClCG03G007000 Citrullus lanatus HOM05D006911 ORTHO05D006663 7.1e-09 63.9 77 45.5
Migut.H01374 Erythranthe guttata HOM05D006911 ORTHO05D006663 7.1e-09 63.9 49 59.2
Aqoxy6G00602 Aquilegia oxysepala HOM05D006911 ORTHO05D006663 9.3e-09 63.5 66 51.5
C05p04730 Brassica napus HOM05D006911 ORTHO05D006663 1.2e-08 63.2 88 40.9
BolC5t29245H Brassica oleracea HOM05D006911 ORTHO05D006663 1.2e-08 63.2 88 40.9
Lj6g0027673 Lotus japonicus HOM05D006911 ORTHO05D006663 1.2e-08 63.2 69 46.4
Oeu040961.1 Olea europaea HOM05D006911 ORTHO05D006663 1.2e-08 63.2 41 68.3
ATR0585G110 Amborella trichopoda HOM05D006911 ORTHO05D006663 2.1e-08 62.4 77 45.5
Glyma.08G083800 Glycine max HOM05D006911 ORTHO05D006663 2.1e-08 62.4 68 47.1
BraA10t42779Z Brassica rapa HOM05D006911 ORTHO05D006663 2.7e-08 62.0 88 40.9
Sp1g05240 Schrenkiella parvula HOM05D006911 ORTHO05D006663 2.7e-08 62.0 88 39.8
THA.LOC104806122 Tarenaya hassleriana HOM05D010376 ORTHO05D006663 2.7e-08 62.0 50 58.0
Lsat_1_v5_gn_1_96620 Lactuca sativa HOM05D006911 ORTHO05D006663 4.6e-08 61.2 83 38.6
TWI14G1424 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 6.0e-08 60.8 67 49.3
Carub.0001s0584 Capsella rubella HOM05D006911 ORTHO05D006663 1.7e-07 59.3 64 50.0
BcaB02g06798 Brassica carinata HOM05D006911 ORTHO05D006663 2.3e-07 58.9 89 38.2
AL1G16490 Arabidopsis lyrata HOM05D006911 ORTHO05D006663 3.0e-07 58.5 51 54.9
Thhalv10009210m.g Eutrema salsugineum HOM05D006911 ORTHO05D006663 3.9e-07 58.2 90 37.8
ClCG01G024470 Citrullus lanatus HOM05D006911 ORTHO05D006663 5.1e-07 57.8 68 47.1
Eucgr.A02012 Eucalyptus grandis HOM05D006911 ORTHO05D006663 5.1e-07 57.8 60 45.0
Glyma.05G129200 Glycine max HOM05D006911 ORTHO05D006663 6.6e-07 57.4 69 47.8
Lj4g0007682 Lotus japonicus HOM05D006911 ORTHO05D006663 6.6e-07 57.4 77 46.8
Lalb_Chr04g0248851 Lupinus albus HOM05D006911 ORTHO05D006663 6.6e-07 57.4 70 47.1
Lalb_Chr10g0106611 Lupinus albus HOM05D006911 ORTHO05D006663 6.6e-07 57.4 72 44.4
Medtr1g018130 Medicago truncatula HOM05D004894 ORTHO05D005689 6.6e-07 57.4 66 48.5
Phvul.002G194700 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 6.6e-07 57.4 69 43.5
Sed0015743 Sechium edule HOM05D006911 ORTHO05D006663 6.6e-07 57.4 77 44.2
MELO3C007147.2 Cucumis melo HOM05D006911 ORTHO05D006663 8.7e-07 57.0 68 47.1
Lsat_1_v5_gn_7_7541 Lactuca sativa HOM05D006911 ORTHO05D006663 8.7e-07 57.0 74 44.6
CsaV3_6G051600 Cucumis sativus L. HOM05D006911 ORTHO05D006663 1.1e-06 56.6 70 42.9
PGSC0003DMG400008315 Solanum tuberosum HOM05D024954 ORTHO05D018132 1.5e-06 56.2 68 51.5
DCAR_007899 Daucus carota HOM05D006911 ORTHO05D006663 1.9e-06 55.8 38 65.8
Solyc02g070820.1 Solanum lycopersicum HOM05D024954 ORTHO05D006663 1.9e-06 55.8 68 51.5
Sopen02g019930 Solanum pennellii HOM05D024954 ORTHO05D018132 1.9e-06 55.8 68 51.5
CARHR006090 Cardamine hirsuta HOM05D006911 ORTHO05D006663 2.5e-06 55.5 54 55.6
Sed0023541 Sechium edule HOM05D006911 ORTHO05D006663 2.5e-06 55.5 52 48.1
Aa31LG1G7540 Aethionema arabicum HOM05D006911 ORTHO05D006663 5.6e-06 54.3 47 61.7
Sed0011251 Sechium edule HOM05D006911 ORTHO05D006663 5.6e-06 54.3 68 44.1
Sed0000672 Sechium edule HOM05D006911 ORTHO05D006663 7.3e-06 53.9 77 40.3


User provided reference genes

Program Settings