Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn3g20453 Nelumbo nucifera HOM05D006325 ORTHO05D007878 4.8e-36 154.1 82 100.0
PGSC0003DMG403011204 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.3e-14 82.8 85 63.5
CAN.G160.11 Capsicum annuum HOM05D006325 ORTHO05D007878 2.3e-14 82.0 86 61.6
Nitab4.5_0002611g0130 Nicotiana tabacum HOM05D006325 ORTHO05D007878 2.3e-14 82.0 77 64.9
Nitab4.5_0003551g0100 Nicotiana tabacum HOM05D006325 ORTHO05D007878 5.1e-14 80.9 83 61.4
PGSC0003DMG402022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 6.7e-14 80.5 83 63.9
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.1e-13 79.7 79 62.0
CSS0005985 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 1.9e-13 79.0 86 61.6
CSS0005499 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 3.3e-13 78.2 86 61.6
PGSC0003DMG400011149 Solanum tuberosum HOM05D006325 ORTHO05D007878 4.3e-13 77.8 81 59.3
CiPaw.10G089300 Carya illinoinensis HOM05D006325 ORTHO05D007878 7.4e-13 77.0 85 55.3
Hma1.2p1_0594F.1_g185940 Hydrangea macrophylla HOM05D006325 ORTHO05D007878 2.1e-12 75.5 88 56.8
Nn4g26622 Nelumbo nucifera HOM05D006325 ORTHO05D007878 2.1e-12 75.5 54 74.1
Phvul.002G178300 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 3.7e-12 74.7 84 54.8
Phvul.002G179400 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 3.7e-12 74.7 84 54.8
CiPaw.09G120800 Carya illinoinensis HOM05D006325 ORTHO05D007878 4.8e-12 74.3 83 53.0
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 4.8e-12 74.3 98 48.0
CAN.G160.12 Capsicum annuum HOM05D006325 ORTHO05D007878 6.2e-12 73.9 109 46.8
MD10G1258900 Malus domestica HOM05D006325 ORTHO05D007878 6.2e-12 73.9 101 51.5
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 6.2e-12 73.9 83 56.6
Ciclev10026747m.g Citrus clementina HOM05D006325 ORTHO05D007878 1.1e-11 73.2 83 55.4
Ciclev10026858m.g Citrus clementina HOM05D006325 ORTHO05D007878 4.0e-11 71.2 85 55.3
PSO541G2396 Papaver somniferum HOM05D006325 ORTHO05D007878 4.0e-11 71.2 96 52.1
QL05p055432 Quercus lobata HOM05D006325 ORTHO05D007878 4.0e-11 71.2 89 48.3
CAN.G160.10 Capsicum annuum HOM05D006325 ORTHO05D007878 5.3e-11 70.9 106 46.2
CAN.G2122.1 Capsicum annuum HOM05D006325 ORTHO05D007878 5.3e-11 70.9 105 47.6
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 5.3e-11 70.9 91 51.6
PGSC0003DMG401022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 6.9e-11 70.5 81 53.1
CsaV3_6G051960 Cucumis sativus L. HOM05D006325 ORTHO05D007878 9.0e-11 70.1 81 51.9
FAN21G1261 Fragaria x ananassa HOM05D006325 ORTHO05D007878 9.0e-11 70.1 89 49.4
Potri.011G081001 Populus trichocarpa HOM05D006325 ORTHO05D007878 9.0e-11 70.1 85 47.1
Sed0008419 Sechium edule HOM05D006325 ORTHO05D007878 9.0e-11 70.1 81 54.3
Solyc11g020860.1 Solanum lycopersicum HOM05D006325 ORTHO05D007878 9.0e-11 70.1 78 52.6
MELO3C007112.2 Cucumis melo HOM05D006325 ORTHO05D007878 1.2e-10 69.7 81 51.9
Sopen11g011030 Solanum pennellii HOM05D006325 ORTHO05D007878 1.2e-10 69.7 78 52.6
BcaB03g13839 Brassica carinata HOM05D006325 ORTHO05D007878 2.0e-10 68.9 71 59.2
Ciclev10017179m.g Citrus clementina HOM05D006325 ORTHO05D007878 2.0e-10 68.9 89 51.7
FvH4_3g05130 Fragaria vesca HOM05D006325 ORTHO05D007878 2.0e-10 68.9 89 49.4
FAN25G3009 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.0e-10 68.9 89 48.3
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 2.6e-10 68.6 93 50.5
BcaC06g35496 Brassica carinata HOM05D006325 ORTHO05D007878 2.6e-10 68.6 71 59.2
A07p10030 Brassica napus HOM05D006325 ORTHO05D007878 2.6e-10 68.6 71 59.2
BolC7t42032H Brassica oleracea HOM05D006325 ORTHO05D007878 2.6e-10 68.6 71 59.2
BraA07t28796Z Brassica rapa HOM05D006325 ORTHO05D007878 2.6e-10 68.6 71 59.2
Haze_05647 Corylus avellana HOM05D006325 ORTHO05D007878 2.6e-10 68.6 85 49.4
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 2.6e-10 68.6 65 61.5
FAN11G2857 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.6e-10 68.6 89 48.3
Lsat_1_v5_gn_0_34220 Lactuca sativa HOM05D006325 ORTHO05D007878 2.6e-10 68.6 78 51.3
Sabra11G0064500 Salix brachista HOM05D006325 ORTHO05D007878 2.6e-10 68.6 85 44.7
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 3.4e-10 68.2 94 50.0
Ca_18164_v3 Cicer arietinum L. HOM05D006325 ORTHO05D007878 3.4e-10 68.2 85 45.9
Lalb_Chr13g0293971 Lupinus albus HOM05D006325 ORTHO05D007878 4.5e-10 67.8 93 48.4
Potri.004G133180 Populus trichocarpa HOM05D006325 ORTHO05D007878 4.5e-10 67.8 81 46.9
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 5.8e-10 67.4 60 63.3
MBI18_g11235_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 5.8e-10 67.4 78 52.6
TWI09G0296 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 5.8e-10 67.4 98 45.9
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 7.6e-10 67.0 66 59.1
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 7.6e-10 67.0 69 60.9
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 7.6e-10 67.0 69 60.9
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 7.6e-10 67.0 69 60.9
Glyma.08G099000 Glycine max HOM05D006325 ORTHO05D007878 7.6e-10 67.0 92 48.9
RcHm_v2.0_Chr5g0014631 Rosa chinensis HOM05D006325 ORTHO05D007878 7.6e-10 67.0 90 46.7
Thecc.06G145500 Theobroma cacao HOM05D006325 ORTHO05D007878 7.6e-10 67.0 67 56.7
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 1.0e-09 66.6 59 67.8
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 1.0e-09 66.6 93 48.4
COL.COLO4_31021 Corchorus olitorius HOM05D006325 ORTHO05D007878 1.0e-09 66.6 58 65.5
FAN16G1041 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.3e-09 66.2 89 47.2
FAN16G2667 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.3e-09 66.2 89 47.2
Gohir.A05G146600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 2.2e-09 65.5 67 53.7
Psat7g080360 Pisum sativum HOM05D006325 ORTHO05D007878 2.2e-09 65.5 94 50.0
Cc00_g01980 Coffea canephora HOM05D006325 ORTHO05D007878 2.9e-09 65.1 82 50.0
Sopen07g002000 Solanum pennellii HOM05D006325 ORTHO05D007878 2.9e-09 65.1 81 50.6
Gohir.D05G149100 Gossypium hirsutum HOM05D006325 ORTHO05D007878 3.8e-09 64.7 67 53.7
PGSC0003DMG400009263 Solanum tuberosum HOM05D006325 ORTHO05D007878 3.8e-09 64.7 83 49.4
CANSAT35G0285 Cannabis sativa HOM05D006325 ORTHO05D007878 5.0e-09 64.3 101 46.5
Nitab4.5_0008310g0030 Nicotiana tabacum HOM05D006325 ORTHO05D007878 5.0e-09 64.3 65 53.8
Psat7g080440 Pisum sativum HOM05D006325 ORTHO05D007878 5.0e-09 64.3 96 43.8
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 6.5e-09 63.9 41 73.2
Medtr4g083110 Medicago truncatula HOM05D006325 ORTHO05D007878 6.5e-09 63.9 86 44.2
ClCG01G024840 Citrullus lanatus HOM05D006325 ORTHO05D007878 8.4e-09 63.5 84 44.0
QL04p045948 Quercus lobata HOM05D006325 ORTHO05D007878 8.4e-09 63.5 68 55.9
Duzib192G0952 Durio zibethinus HOM05D006325 ORTHO05D007878 1.1e-08 63.2 94 44.7
Gorai.009G153100 Gossypium raimondii HOM05D006325 ORTHO05D007878 1.1e-08 63.2 66 53.0
Medtr5g077640 Medicago truncatula HOM05D006325 ORTHO05D007878 1.4e-08 62.8 85 47.1
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 2.5e-08 62.0 40 75.0
DCAR_007876 Daucus carota HOM05D006325 ORTHO05D007878 2.5e-08 62.0 84 46.4
Glyma.05G143000 Glycine max HOM05D006325 ORTHO05D007878 2.5e-08 62.0 90 45.6
MBI02_g07020_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 2.5e-08 62.0 72 54.2
TPR.G34042 Trifolium pratense HOM05D006325 ORTHO05D007878 2.5e-08 62.0 88 44.3
TWI53G1846 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 2.5e-08 62.0 96 42.7
Aqoxy4G00063 Aquilegia oxysepala HOM05D006325 ORTHO05D007878 3.2e-08 61.6 79 49.4
QL04p045922 Quercus lobata HOM05D006325 ORTHO05D007878 4.2e-08 61.2 69 56.5
CAN.G2122.2 Capsicum annuum HOM05D006325 ORTHO05D007878 5.5e-08 60.8 81 49.4
Eucgr.D00273 Eucalyptus grandis HOM05D006325 ORTHO05D007878 5.5e-08 60.8 66 54.5
Peaxi162Scf00062g00009 Petunia axillaris HOM05D006325 ORTHO05D007878 5.5e-08 60.8 66 51.5
CAN.G160.9 Capsicum annuum HOM05D006325 ORTHO05D007878 7.1e-08 60.5 80 47.5
Lj4g0010729 Lotus japonicus HOM05D006325 ORTHO05D007878 7.1e-08 60.5 88 44.3
Cpa.g.sc17.42 Carica papaya HOM05D006325 ORTHO05D007878 9.3e-08 60.1 90 47.8
Gohir.A06G139600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 9.3e-08 60.1 65 55.4
Psat7g080320 Pisum sativum HOM05D006325 ORTHO05D007878 9.3e-08 60.1 88 48.9
Lsat_1_v5_gn_7_27621 Lactuca sativa HOM05D006325 ORTHO05D007878 1.2e-07 59.7 92 43.5
Lj4g0007216 Lotus japonicus HOM05D006325 ORTHO05D007878 3.5e-07 58.2 96 42.7
Gohir.D06G144350 Gossypium hirsutum HOM05D006325 ORTHO05D007878 4.6e-07 57.8 65 53.8
Gorai.010G168000 Gossypium raimondii HOM05D006325 ORTHO05D007878 4.6e-07 57.8 65 53.8
MELO3C002763.2 Cucumis melo HOM05D006325 ORTHO05D007878 6.1e-07 57.4 91 46.2
Medtr5g077680 Medicago truncatula HOM05D006325 ORTHO05D007878 6.1e-07 57.4 39 69.2
Medtr8g079458 Medicago truncatula HOM05D006325 ORTHO05D007878 6.1e-07 57.4 39 69.2
Manes.17G073700 Manihot esculenta HOM05D006325 ORTHO05D007878 1.0e-06 56.6 81 44.4
Medtr4g012020 Medicago truncatula HOM05D006325 ORTHO05D007878 1.0e-06 56.6 38 71.1
TPR.G13312 Trifolium pratense HOM05D006325 ORTHO05D007878 1.0e-06 56.6 91 44.0
Medtr1437s0010 Medicago truncatula HOM05D006325 ORTHO05D007878 1.8e-06 55.8 39 66.7
Duzib160G0583 Durio zibethinus HOM05D006325 ORTHO05D007878 2.3e-06 55.5 74 44.6
TPR.G21965 Trifolium pratense HOM05D006325 ORTHO05D007878 2.3e-06 55.5 89 42.7
ClCG03G006550 Citrullus lanatus HOM05D006325 ORTHO05D007878 3.0e-06 55.1 96 42.7
CsaV3_1G036810 Cucumis sativus L. HOM05D006325 ORTHO05D007878 3.9e-06 54.7 89 46.1
Gohir.A10G043400 Gossypium hirsutum HOM05D006325 ORTHO05D007878 5.1e-06 54.3 37 70.3
Gohir.D10G044600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 5.1e-06 54.3 37 70.3
Gorai.011G047600 Gossypium raimondii HOM05D006325 ORTHO05D007878 5.1e-06 54.3 37 70.3
Lalb_Chr07g0187521 Lupinus albus HOM05D006325 ORTHO05D007878 8.7e-06 53.5 105 38.1
Sed0022207 Sechium edule HOM05D006325 ORTHO05D007878 8.7e-06 53.5 90 40.0


User provided reference genes

Program Settings