Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn3g20293 Nelumbo nucifera HOM05D000406 ORTHO05D007930 7.5e-36 153.3 76 100.0
MD16G1069100 Malus domestica HOM05D000406 ORTHO05D007930 1.7e-27 125.6 76 76.3
Gorai.013G088000 Gossypium raimondii HOM05D000406 ORTHO05D007930 3.7e-27 124.4 76 77.6
QL03p068080 Quercus lobata HOM05D000406 ORTHO05D007930 3.7e-27 124.4 76 77.6
CSS0042722 Camellia sinensis var. sinensis HOM05D000406 ORTHO05D007930 8.3e-27 123.2 76 77.6
Cfa008952 Carpinus fangiana HOM05D000406 ORTHO05D007930 8.3e-27 123.2 76 77.6
Gohir.D13G077000 Gossypium hirsutum HOM05D000406 ORTHO05D007930 8.3e-27 123.2 76 76.3
Potri.010G165900 Populus trichocarpa HOM05D000406 ORTHO05D007930 8.3e-27 123.2 76 75.0
CiPaw.05G131700 Carya illinoinensis HOM05D000406 ORTHO05D007930 1.1e-26 122.9 76 76.3
Sabra10G0126200 Salix brachista HOM05D000406 ORTHO05D007930 1.1e-26 122.9 76 75.0
Haze_11981 Corylus avellana HOM05D000406 ORTHO05D007930 1.4e-26 122.5 76 77.6
Thecc.02G342200 Theobroma cacao HOM05D000406 ORTHO05D007930 1.4e-26 122.5 76 76.3
COL.COLO4_27997 Corchorus olitorius HOM05D000406 ORTHO05D007930 1.9e-26 122.1 76 73.7
Duzib268G1288 Durio zibethinus HOM05D000406 ORTHO05D007930 1.9e-26 122.1 76 75.0
Oeu021062.1 Olea europaea HOM05D000406 ORTHO05D007930 1.9e-26 122.1 76 77.6
EL10Ac6g13247 Beta vulgaris HOM05D000406 ORTHO05D007930 2.4e-26 121.7 76 73.7
GSVIVG01019946001 Vitis vinifera HOM05D000406 ORTHO05D007930 2.4e-26 121.7 76 75.0
Actinidia33216 Actinidia chinensis HOM05D000406 ORTHO05D007930 4.1e-26 120.9 76 75.0
SalBow2G0887 Salvia bowleyana HOM05D000406 ORTHO05D007930 4.1e-26 120.9 76 76.3
Lalb_Chr02g0150881 Lupinus albus HOM05D000406 ORTHO05D007930 5.4e-26 120.6 76 71.1
Prupe.1G278100 Prunus persica HOM05D000406 ORTHO05D007930 7.0e-26 120.2 76 72.4
Hma1.2p1_0357F.1_g134200 Hydrangea macrophylla HOM05D000406 ORTHO05D007930 9.2e-26 119.8 76 73.7
Ca_10371_v3 Cicer arietinum L. HOM05D000406 ORTHO05D007930 1.2e-25 119.4 76 71.1
Ca_10421_v3 Cicer arietinum L. HOM05D000406 ORTHO05D007930 1.2e-25 119.4 76 71.1
FvH4_4g31010 Fragaria vesca HOM05D000406 ORTHO05D007930 1.2e-25 119.4 76 72.4
FAN12G3284 Fragaria x ananassa HOM05D000406 ORTHO05D007930 1.2e-25 119.4 76 72.4
Psat0s1505g0080 Pisum sativum HOM05D000406 ORTHO05D007930 1.2e-25 119.4 76 71.1
RcHm_v2.0_Chr7g0223901 Rosa chinensis HOM05D000406 ORTHO05D007930 1.2e-25 119.4 76 72.4
FAN07G2704 Fragaria x ananassa HOM05D000406 ORTHO05D007930 1.6e-25 119.0 76 71.1
Gohir.A13G077800 Gossypium hirsutum HOM05D000406 ORTHO05D007930 1.6e-25 119.0 76 75.0
Manes.05G105100 Manihot esculenta HOM05D000406 ORTHO05D007930 1.6e-25 119.0 76 72.4
TPR.G13397 Trifolium pratense HOM05D000406 ORTHO05D007930 1.6e-25 119.0 76 72.4
Atru.BG.290.p Acer truncatum HOM05D000406 ORTHO05D007930 2.0e-25 118.6 76 73.7
Ah.02g129480 Amaranthus hybridus HOM05D000406 ORTHO05D007930 2.0e-25 118.6 76 71.1
Glyma.20G195300 Glycine max HOM05D000406 ORTHO05D007930 2.0e-25 118.6 76 69.7
Nitab4.5_0000040g0050 Nicotiana tabacum HOM05D000406 ORTHO05D007930 2.0e-25 118.6 76 72.4
VMungo0720G3006 Vigna mungo HOM05D000406 ORTHO05D007930 2.0e-25 118.6 76 69.7
Aqoxy3G03457 Aquilegia oxysepala HOM05D000406 ORTHO05D007930 2.7e-25 118.2 76 76.3
Cpa.g.sc1.52 Carica papaya HOM05D000406 ORTHO05D007930 2.7e-25 118.2 76 75.0
FAN22G1074 Fragaria x ananassa HOM05D000406 ORTHO05D007930 2.7e-25 118.2 76 69.7
Solyc05g007730.4 Solanum lycopersicum HOM05D000406 ORTHO05D007930 2.7e-25 118.2 76 71.1
AUR62005826 Chenopodium quinoa HOM05D000406 ORTHO05D007930 3.5e-25 117.9 76 71.1
Eucgr.B03206 Eucalyptus grandis HOM05D000406 ORTHO05D007930 3.5e-25 117.9 76 71.1
FAN17G2950 Fragaria x ananassa HOM05D000406 ORTHO05D007930 3.5e-25 117.9 76 71.1
Medtr1g090330 Medicago truncatula HOM05D000406 ORTHO05D007930 3.5e-25 117.9 76 68.4
Phvul.007G136400 Phaseolus vulgaris HOM05D000406 ORTHO05D007930 3.5e-25 117.9 76 69.7
Hund25217 Selenicereus undatus HOM05D000406 ORTHO05D007930 3.5e-25 117.9 76 69.7
TWI75G0270 Tripterygium wilfordii HOM05D000406 ORTHO05D007930 3.5e-25 117.9 76 71.1
ECA233G1684 Erigeron canadensis HOM05D000406 ORTHO05D007930 4.6e-25 117.5 76 73.7
Glyma.10G194600 Glycine max HOM05D000406 ORTHO05D007930 4.6e-25 117.5 76 68.4
Nitab4.5_0023368g0010 Nicotiana tabacum HOM05D000406 ORTHO05D007930 4.6e-25 117.5 76 71.1
CAN.G1335.12 Capsicum annuum HOM05D000406 ORTHO05D007930 6.0e-25 117.1 76 69.7
MBI05_g36410_MAGBIO Magnolia biondii HOM05D000406 ORTHO05D007930 6.0e-25 117.1 76 69.7
Lj5g0009570 Lotus japonicus HOM05D000406 ORTHO05D007930 7.8e-25 116.7 76 68.4
AUR62032820 Chenopodium quinoa HOM05D000406 ORTHO05D007930 1.0e-24 116.3 76 71.1
Sopen05g003590 Solanum pennellii HOM05D000406 ORTHO05D007930 1.0e-24 116.3 76 69.7
FAN17G2122 Fragaria x ananassa HOM05D000406 ORTHO05D007930 1.3e-24 115.9 75 70.7
FvH4_4g31020 Fragaria vesca HOM05D000406 ORTHO05D007930 1.7e-24 115.5 76 69.7
FAN12G1422 Fragaria x ananassa HOM05D000406 ORTHO05D007930 1.7e-24 115.5 76 69.7
PGSC0003DMG400018411 Solanum tuberosum HOM05D000406 ORTHO05D007930 1.7e-24 115.5 76 69.7
ATR0564G048 Amborella trichopoda HOM05D000406 ORTHO05D007930 2.3e-24 115.2 76 68.4
CANSAT25G0956 Cannabis sativa HOM05D000406 ORTHO05D007930 2.3e-24 115.2 76 75.0
CANSAT25G1801 Cannabis sativa HOM05D000406 ORTHO05D007930 2.3e-24 115.2 76 75.0
PSO063G3303 Papaver somniferum HOM05D000406 ORTHO05D007930 2.3e-24 115.2 77 74.0
Rhsim10G0115700 Rhododendron simsii HOM05D000406 ORTHO05D007930 2.3e-24 115.2 76 69.7
Lj5g0001007 Lotus japonicus HOM05D000406 ORTHO05D007930 3.0e-24 114.8 76 67.1
MSTRG.7785 Avicennia marina HOM05D000406 ORTHO05D007930 3.9e-24 114.4 76 71.1
DCAR_031000 Daucus carota HOM05D000406 ORTHO05D007930 3.9e-24 114.4 76 69.7
Lsat_1_v5_gn_8_50180 Lactuca sativa HOM05D000406 ORTHO05D007930 5.0e-24 114.0 76 68.4
Lj6A785G39 Lonicera japonica HOM05D000406 ORTHO05D007930 5.0e-24 114.0 76 71.1
Sed0021515 Sechium edule HOM05D000406 ORTHO05D007930 5.0e-24 114.0 76 69.7
vmacro05307 Vaccinium macrocarpon HOM05D000406 ORTHO05D007930 5.0e-24 114.0 76 72.4
Nitab4.5_0025712g0010 Nicotiana tabacum HOM05D000406 ORTHO05D007930 8.6e-24 113.2 76 69.7
arahy.Tifrunner.gnm1.ann1.QHL3N1 Arachis hypogaea HOM05D000406 ORTHO05D007930 1.5e-23 112.5 76 69.7
ClCG00G005130 Citrullus lanatus HOM05D000406 ORTHO05D007930 3.3e-23 111.3 76 68.4
ClCG05G024090 Citrullus lanatus HOM05D000406 ORTHO05D007930 3.3e-23 111.3 76 68.4
Cc11_g12700 Coffea canephora HOM05D000406 ORTHO05D007930 3.3e-23 111.3 76 68.4
MELO3C012116.2 Cucumis melo HOM05D000406 ORTHO05D007930 4.3e-23 110.9 76 69.7
CsaV3_5G032940 Cucumis sativus L. HOM05D000406 ORTHO05D007930 4.3e-23 110.9 76 69.7
Os04g0449000 Oryza sativa ssp. japonica HOM05D000406 ORTHO05D007930 4.3e-23 110.9 76 69.7
Peaxi162Scf00222g00714 Petunia axillaris HOM05D000406 ORTHO05D007930 4.3e-23 110.9 76 65.8
arahy.Tifrunner.gnm1.ann1.9U4JYE Arachis hypogaea HOM05D000406 ORTHO05D007930 5.6e-23 110.5 76 68.4
Ciclev10032205m.g Citrus clementina HOM05D000406 ORTHO05D007930 5.6e-23 110.5 76 72.4
HanXRQChr12g0362131 Helianthus annuus HOM05D000406 ORTHO05D007930 7.3e-23 110.2 76 65.8
SGA_v2.0_scaffold455G51893 Striga asiatica HOM05D000406 ORTHO05D007930 1.2e-22 109.4 76 68.4
RcHm_v2.0_Chr4g0439381 Rosa chinensis HOM05D000406 ORTHO05D007930 4.7e-22 107.5 74 68.9
PGR102G0212 Punica granatum HOM05D000406 ORTHO05D007930 6.2e-22 107.1 76 69.7
Zm00001eb081450 Zea mays HOM05D000406 ORTHO05D007930 6.2e-22 107.1 76 67.1
Thhalv10008242m.g Eutrema salsugineum HOM05D000406 ORTHO05D007930 8.1e-22 106.7 76 65.8
Sp1g12480 Schrenkiella parvula HOM05D000406 ORTHO05D007930 1.4e-21 105.9 76 65.8
AL1G26010 Arabidopsis lyrata HOM05D000406 ORTHO05D007930 1.8e-21 105.5 76 64.5
Migut.L01263 Erythranthe guttata HOM05D000406 ORTHO05D007930 1.8e-21 105.5 77 64.9
CARHR014530 Cardamine hirsuta HOM05D000406 ORTHO05D007930 2.3e-21 105.1 76 64.5
Carub.0001s1382 Capsella rubella HOM05D000406 ORTHO05D007930 3.1e-21 104.8 76 64.5
AT1G14140 Arabidopsis thaliana HOM05D000406 ORTHO05D007930 5.2e-21 104.0 76 63.2
MD13G1068800 Malus domestica HOM05D000406 ORTHO05D007930 6.8e-21 103.6 75 64.0
BcaB08g34370 Brassica carinata HOM05D000406 ORTHO05D007930 4.4e-20 100.9 76 63.2
BcaC07g41599 Brassica carinata HOM05D000406 ORTHO05D007930 4.4e-20 100.9 76 63.2
A09p62440 Brassica napus HOM05D000406 ORTHO05D007930 4.4e-20 100.9 76 63.2
C08p46000 Brassica napus HOM05D000406 ORTHO05D007930 4.4e-20 100.9 76 63.2
BolC8t52151H Brassica oleracea HOM05D000406 ORTHO05D007930 4.4e-20 100.9 76 63.2
BraA09t41608Z Brassica rapa HOM05D000406 ORTHO05D007930 4.4e-20 100.9 76 63.2
Pp3c9_6090 Physcomitrium patens HOM05D000406 ORTHO05D007930 7.5e-20 100.1 76 67.1
SEGI_01069 Sequoiadendron giganteum HOM05D000406 ORTHO05D007930 7.5e-20 100.1 76 64.5
CDE04G3169 Ceratophyllum demersum HOM05D000406 ORTHO05D007930 1.7e-19 99.0 73 64.4
Aqoxy301s001 Aquilegia oxysepala HOM05D000406 ORTHO05D007930 2.2e-19 98.6 63 74.6
Mapoly0004s0062 Marchantia polymorpha HOM05D000406 ORTHO05D007930 2.2e-19 98.6 83 60.2
AagrBONN_evm.TU.Sc2ySwM_228.1586 Anthoceros agrestis HOM05D000406 ORTHO05D007930 1.1e-18 96.3 82 58.5
CBR_g51827 Chara braunii HOM05D000406 ORTHO05D007930 5.4e-18 94.0 76 63.2
CBR_g19218 Chara braunii HOM05D000406 ORTHO05D007930 5.1e-16 87.4 94 51.1
PRCOL_00003605 Prasinoderma coloniale HOM05D000406 ORTHO05D007930 1.4e-13 79.3 76 50.0
Cre04.g218650 Chlamydomonas reinhardtii HOM05D000406 ORTHO05D007930 2.4e-13 78.6 78 55.1
CiPaw.05G131400 Carya illinoinensis HOM05D000406 ORTHO05D007930 4.0e-13 77.8 62 59.7
FAN22G1789 Fragaria x ananassa HOM05D000406 ORTHO05D007930 5.2e-13 77.4 76 50.0
FAN22G0782 Fragaria x ananassa HOM05D000406 ORTHO05D007930 1.5e-12 75.9 67 59.7
SMO143G0018 Selaginella moellendorffii HOM05D000406 ORTHO05D007930 1.9e-10 68.9 62 58.1
SMO347G0166 Selaginella moellendorffii HOM05D000406 ORTHO05D002216 1.5e-07 59.3 75 38.7
Ciclev10028916m.g Citrus clementina HOM05D000406 ORTHO05D002714 1.9e-07 58.9 76 39.5
FAN25G2210 Fragaria x ananassa HOM05D000406 ORTHO05D002714 3.3e-07 58.2 76 36.8
HPP92_010951 Vanilla planifolia HOM05D000406 ORTHO05D002216 4.3e-07 57.8 72 43.1
Dinv16675 Davidia involucrata HOM05D000406 ORTHO05D007930 5.6e-07 57.4 38 73.7
FAN11G1282 Fragaria x ananassa HOM05D000406 ORTHO05D002714 5.6e-07 57.4 76 36.8
FAN16G1720 Fragaria x ananassa HOM05D000406 ORTHO05D002714 5.6e-07 57.4 76 36.8
Prupe.6G063200 Prunus persica HOM05D000406 ORTHO05D002714 5.6e-07 57.4 76 36.8
Dinv14477 Davidia involucrata HOM05D000406 ORTHO05D002714 7.3e-07 57.0 76 36.8
SMO203G0261 Selaginella moellendorffii HOM05D000406 ORTHO05D002216 7.3e-07 57.0 75 40.0
Cpa.g.sc112.80 Carica papaya HOM05D000406 ORTHO05D002714 9.6e-07 56.6 76 38.2
Duzib041G0059 Durio zibethinus HOM05D000406 ORTHO05D002216 9.6e-07 56.6 75 40.0
Aa31LG6G15060 Aethionema arabicum HOM05D000406 ORTHO05D002216 1.2e-06 56.2 72 40.3
Duzib093G0751 Durio zibethinus HOM05D000406 ORTHO05D002216 1.2e-06 56.2 72 41.7
ECA247G3985 Erigeron canadensis HOM05D000406 ORTHO05D002714 1.2e-06 56.2 76 36.8
Lsat_1_v5_gn_9_25480 Lactuca sativa HOM05D000406 ORTHO05D002714 1.2e-06 56.2 76 36.8
MD03G1078200 Malus domestica HOM05D000406 ORTHO05D002714 1.2e-06 56.2 76 36.8
MD11G1082900 Malus domestica HOM05D000406 ORTHO05D002714 1.2e-06 56.2 76 36.8
QL01p027412 Quercus lobata HOM05D000406 ORTHO05D002714 1.2e-06 56.2 76 38.2
QL93p2004_0037 Quercus lobata HOM05D000406 ORTHO05D002714 1.2e-06 56.2 76 38.2
RcHm_v2.0_Chr5g0067991 Rosa chinensis HOM05D000406 ORTHO05D002714 1.2e-06 56.2 76 36.8
Cfa011631 Carpinus fangiana HOM05D000406 ORTHO05D002714 1.6e-06 55.8 76 36.8
COL.COLO4_35205 Corchorus olitorius HOM05D000406 ORTHO05D002216 1.6e-06 55.8 72 38.9
TWI31G0919 Tripterygium wilfordii HOM05D000406 ORTHO05D002714 1.6e-06 55.8 76 36.8
Aa31LG7G14320 Aethionema arabicum HOM05D000406 ORTHO05D002216 2.1e-06 55.5 72 37.5
C09p51170 Brassica napus HOM05D000406 ORTHO05D002714 2.1e-06 55.5 76 35.5
Migut.N00897 Erythranthe guttata HOM05D000406 ORTHO05D002714 2.1e-06 55.5 76 36.8
TWI56G0228 Tripterygium wilfordii HOM05D000406 ORTHO05D002216 2.1e-06 55.5 72 38.9
ATR0618G194 Amborella trichopoda HOM05D000406 ORTHO05D002714 2.8e-06 55.1 76 35.5
HanXRQChr13g0410591 Helianthus annuus HOM05D000406 ORTHO05D002714 2.8e-06 55.1 76 38.2
Manes.02G122900 Manihot esculenta HOM05D000406 ORTHO05D002714 2.8e-06 55.1 76 35.5
Thecc.08G069000 Theobroma cacao HOM05D000406 ORTHO05D002216 2.8e-06 55.1 72 40.3
Os09g0465400 Oryza sativa ssp. japonica HOM05D000406 ORTHO05D002216 3.6e-06 54.7 72 41.7
MSTRG.10234 Avicennia marina HOM05D000406 ORTHO05D002714 4.7e-06 54.3 76 35.5
Pp3c21_15870 Physcomitrium patens HOM05D000406 ORTHO05D008572 4.7e-06 54.3 76 36.8
Psat6g168040 Pisum sativum HOM05D000406 ORTHO05D008572 4.7e-06 54.3 73 38.4
unitig_0.g1462 Utricularia gibba HOM05D000406 ORTHO05D002714 4.7e-06 54.3 76 32.9
VMungo0251G0267 Vigna mungo HOM05D000406 ORTHO05D002216 4.7e-06 54.3 72 40.3
A10p16230 Brassica napus HOM05D000406 ORTHO05D002714 6.2e-06 53.9 76 34.2
BolC9t57979H Brassica oleracea HOM05D000406 ORTHO05D002714 6.2e-06 53.9 76 34.2
BraA10t43704Z Brassica rapa HOM05D000406 ORTHO05D002714 6.2e-06 53.9 76 34.2
CANSAT54G1992 Cannabis sativa HOM05D000406 ORTHO05D002714 6.2e-06 53.9 76 36.8
AUR62027176 Chenopodium quinoa HOM05D000406 ORTHO05D002216 6.2e-06 53.9 72 37.5
HanXRQChr08g0237091 Helianthus annuus HOM05D000406 ORTHO05D002714 6.2e-06 53.9 74 35.1
QL11p021742 Quercus lobata HOM05D000406 ORTHO05D002216 6.2e-06 53.9 75 38.7
QL11p023853 Quercus lobata HOM05D000406 ORTHO05D002216 6.2e-06 53.9 75 38.7
Sed0013400 Sechium edule HOM05D000406 ORTHO05D002714 6.2e-06 53.9 76 36.8
Aa31LG1G11680 Aethionema arabicum HOM05D000406 ORTHO05D002714 8.1e-06 53.5 76 34.2
AL4G12040 Arabidopsis lyrata HOM05D000406 ORTHO05D002216 8.1e-06 53.5 72 37.5
AL8G35350 Arabidopsis lyrata HOM05D000406 ORTHO05D002714 8.1e-06 53.5 76 34.2
AT5G58970 Arabidopsis thaliana HOM05D000406 ORTHO05D002714 8.1e-06 53.5 76 34.2
Carub.0008s1961 Capsella rubella HOM05D000406 ORTHO05D002714 8.1e-06 53.5 76 34.2
CARHR285200 Cardamine hirsuta HOM05D000406 ORTHO05D002714 8.1e-06 53.5 76 34.2
MELO3C025878.2 Cucumis melo HOM05D000406 ORTHO05D002714 8.1e-06 53.5 76 35.5
DCAR_012431 Daucus carota HOM05D000406 ORTHO05D008572 8.1e-06 53.5 75 38.7
Thhalv10014206m.g Eutrema salsugineum HOM05D000406 ORTHO05D002714 8.1e-06 53.5 76 34.2
Gohir.A07G102500 Gossypium hirsutum HOM05D000406 ORTHO05D002714 8.1e-06 53.5 76 36.8
Gohir.D07G106500 Gossypium hirsutum HOM05D000406 ORTHO05D002714 8.1e-06 53.5 76 36.8
Gorai.001G114600 Gossypium raimondii HOM05D000406 ORTHO05D002714 8.1e-06 53.5 76 36.8
QL11p021763 Quercus lobata HOM05D000406 ORTHO05D002216 8.1e-06 53.5 75 38.7
SalBow2G0092 Salvia bowleyana HOM05D000406 ORTHO05D002714 8.1e-06 53.5 76 35.5
TPR.G16945 Trifolium pratense HOM05D000406 ORTHO05D008572 8.1e-06 53.5 73 38.4


User provided reference genes

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