Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 3280.3 1704 100.0
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2729.9 1705 82.3
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2572.7 1704 76.7
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2569.3 1705 76.5
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2553.5 1701 76.1
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2524.2 1702 75.0
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2511.1 1706 75.2
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2503.4 1696 74.6
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2491.5 1702 74.8
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2489.5 1704 74.3
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2486.4 1701 74.7
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2484.1 1713 74.7
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2482.6 1711 74.9
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2474.1 1702 75.0
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2473.7 1701 74.6
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2473.4 1703 73.6
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2464.1 1703 74.5
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2454.9 1702 73.1
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2445.6 1705 72.9
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2432.5 1704 72.5
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2429.8 1705 72.3
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2421.4 1705 72.4
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2411.7 1704 72.8
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2409.8 1705 72.0
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2409.0 1713 72.5
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2407.9 1705 72.0
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2406.7 1709 72.2
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2406.3 1720 71.5
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2400.2 1718 71.4
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2394.0 1705 71.8
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2390.1 1723 72.4
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2380.1 1703 71.7
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2376.3 1704 71.1
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2371.7 1684 71.6
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2371.7 1705 71.2
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2370.1 1705 71.4
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2355.1 1704 70.8
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2347.4 1706 70.5
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2342.4 1705 69.9
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2342.0 1705 69.5
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2334.3 1708 70.4
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2329.7 1704 69.1
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2322.4 1714 69.8
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2319.3 1712 69.6
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2312.7 1711 69.7
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2309.3 1711 69.5
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2306.9 1696 68.9
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2301.9 1702 69.7
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2298.9 1703 69.7
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2285.4 1761 67.7
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2281.1 1757 67.8
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2278.8 1711 67.3
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2274.6 1674 69.1
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2264.2 1720 68.4
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2253.0 1695 68.4
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 2236.1 1745 68.3
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 2230.3 1724 66.7
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 2229.9 1704 67.5
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2226.1 1707 67.7
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2211.8 1790 65.7
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 2210.6 1852 63.9
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2204.5 1712 67.1
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 2201.8 1709 66.8
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 2199.5 1710 66.4
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2197.5 1709 66.2
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 2194.5 1718 66.4
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 2189.5 2126 58.1
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 2183.3 1721 65.8
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2180.6 1712 65.8
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 2178.3 1721 65.9
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 2176.0 1414 75.0
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2175.6 1710 65.7
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 2171.7 1715 65.4
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2166.3 1673 66.9
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2164.0 1720 65.8
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2164.0 1732 65.6
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2162.5 1688 66.2
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 2149.8 1712 65.1
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2146.3 1712 64.8
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 2105.5 1642 66.1
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 2104.3 1758 63.4
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 2073.5 1707 63.2
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 2041.2 1292 74.9
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 2038.1 1680 63.2
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 2031.9 1297 74.2
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 2013.0 1706 61.6
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 2001.9 1717 60.0
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 2000.3 1682 62.8
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1954.1 1159 80.3
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1937.2 1794 59.8
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1902.1 1457 66.4
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1806.6 1433 66.5
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1776.9 1620 57.7
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1757.7 1724 54.5
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1741.9 1693 54.1
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1738.4 1717 58.6
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1731.1 1693 55.4
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1685.6 1711 53.2
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1654.4 1045 76.2
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1592.4 1084 69.5
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1547.7 935 78.8
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1481.8 1370 58.5
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1458.4 1127 68.9
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1372.5 1112 66.8
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1356.7 918 79.7
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1322.0 1157 61.9
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1249.6 910 68.7
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 1.3e-300 1037.3 742 68.6
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 1.7e-300 1036.9 616 80.2
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 8.9e-278 961.4 681 66.5
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 4.4e-269 932.6 828 63.8
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 3.7e-268 929.5 601 73.5
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 5.8e-261 905.6 552 79.2
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 1.8e-246 857.4 1565 36.6
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 2.0e-213 747.7 847 43.1
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 4.4e-192 676.8 429 76.5
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 7.5e-160 569.7 376 74.7
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 2.9e-159 567.8 329 83.3
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 6.8e-153 546.6 589 60.1
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 3.3e-147 527.7 620 56.5
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 1.9e-126 458.8 698 40.0
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 8.7e-124 449.9 906 33.1
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 3.4e-112 411.4 530 54.0
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 1.1e-110 406.4 336 65.2
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 1.4e-110 406.0 429 46.2
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 1.5e-107 396.0 241 79.7
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 1.3e-106 392.9 246 71.5
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.0e-100 373.2 213 77.0
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 3.3e-83 315.1 190 82.1
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 2.3e-76 292.4 368 54.9
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 3.8e-71 275.0 177 70.1
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 2.0e-64 252.7 176 66.5
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 1.6e-61 243.0 153 75.2
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 2.1e-53 216.1 203 49.8
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 7.5e-51 207.6 115 89.6
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 3.9e-47 195.3 423 40.2
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 4.7e-45 188.3 129 65.1
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 8.9e-44 184.1 98 92.9
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 3.9e-39 168.7 169 53.3
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 4.0e-36 158.7 130 55.4
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 1.2e-35 157.1 268 47.8
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 4.9e-34 151.8 226 50.0
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 9.2e-33 147.5 205 45.4
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 1.2e-32 147.1 123 56.9
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 5.8e-27 128.3 266 40.2
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 2.9e-26 125.9 111 57.7
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 8.4e-26 124.4 73 80.8
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 4.2e-25 122.1 88 65.9
CSS0034048 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 9.3e-25 120.9 268 45.5
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.7e-24 119.4 62 87.1
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 6.0e-24 118.2 93 66.7
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 1.0e-23 117.5 63 90.5
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 1.3e-23 117.1 83 68.7
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 1.5e-22 113.6 227 37.0
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 1.6e-21 110.2 75 74.7
Actinidia36003 Actinidia chinensis HOM05D004072 ORTHO05D021063 1.2e-19 104.0 114 60.5
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 2.6e-19 102.8 76 64.5
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 1.3e-18 100.5 53 88.7
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 8.4e-18 97.8 57 82.5
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 2.7e-16 92.8 98 43.9
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 2.3e-15 89.7 58 69.0
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 2.5e-14 86.3 50 90.0
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 1.6e-13 83.6 94 50.0
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 2.1e-13 83.2 52 82.7
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 1.3e-10 73.9 44 70.5
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 8.4e-10 71.2 61 60.7
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.4e-09 70.5 95 38.9
CBR_g34927 Chara braunii HOM05D000019 ORTHO05D000002 5.5e-09 68.6 124 30.6
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 9.3e-09 67.8 165 29.7
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 1.6e-08 67.0 35 85.7
SEGI_36323 Sequoiadendron giganteum HOM05D004072 ORTHO05D385563 1.6e-08 67.0 69 49.3
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 2.1e-08 66.6 57 56.1
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 6.0e-08 65.1 44 70.5
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 3.0e-07 62.8 41 68.3
Actinidia04622 Actinidia chinensis HOM05D004072 ORTHO05D019491 3.9e-07 62.4 44 63.6
CSS0009233 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D019491 1.9e-06 60.1 29 89.7
Rhsim12G0022600 Rhododendron simsii HOM05D004072 ORTHO05D005933 4.3e-06 58.9 49 65.3
Lsat_1_v5_gn_7_40200 Lactuca sativa HOM05D000062 ORTHO05D013119 9.6e-06 57.8 31 83.9


User provided reference genes

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