Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn3g18312 Nelumbo nucifera HOM05D002619 ORTHO05D002804 2.8e-52 208.4 108 100.0
Nn2g15083 Nelumbo nucifera HOM05D002619 ORTHO05D002804 1.4e-48 196.1 102 98.0
Nn2g10492 Nelumbo nucifera HOM05D002619 ORTHO05D002804 2.5e-32 142.1 110 64.5
TAR623G0548 Trochodendron aralioides HOM05D002619 ORTHO05D002804 1.1e-27 126.7 110 61.8
TAR369G0856 Trochodendron aralioides HOM05D002619 ORTHO05D002804 3.4e-26 121.7 109 61.5
TAR633G1544 Trochodendron aralioides HOM05D002619 ORTHO05D002804 1.1e-24 116.7 112 60.7
Dinv32845 Davidia involucrata HOM05D002619 ORTHO05D002804 1.4e-24 116.3 106 58.5
Nn5g30962 Nelumbo nucifera HOM05D001927 ORTHO05D001972 1.4e-24 116.3 107 66.4
Thecc.09G328300 Theobroma cacao HOM05D002619 ORTHO05D002804 7.2e-24 114.0 106 56.6
Duzib168G0755 Durio zibethinus HOM05D002619 ORTHO05D002804 2.3e-22 109.0 107 55.1
CSS0041199 Camellia sinensis var. sinensis HOM05D002619 ORTHO05D002804 6.7e-22 107.5 106 52.8
QL01p033488 Quercus lobata HOM05D002619 ORTHO05D002804 6.7e-22 107.5 106 53.8
Duzib150G0531 Durio zibethinus HOM05D002619 ORTHO05D002804 1.1e-21 106.7 106 51.9
Duzib170G0200 Durio zibethinus HOM05D002619 ORTHO05D002804 5.7e-21 104.4 106 51.9
Actinidia37246 Actinidia chinensis HOM05D002619 ORTHO05D002804 2.2e-20 102.4 106 50.0
CiPaw.14G072600 Carya illinoinensis HOM05D002619 ORTHO05D002804 2.2e-20 102.4 106 55.7
Prupe.6G085300 Prunus persica HOM05D002619 ORTHO05D002804 2.2e-20 102.4 111 54.1
Eucgr.B02404 Eucalyptus grandis HOM05D002619 ORTHO05D002804 4.8e-20 101.3 107 53.3
Potri.001G235200 Populus trichocarpa HOM05D002619 ORTHO05D002804 4.8e-20 101.3 106 50.0
Actinidia07071 Actinidia chinensis HOM05D002619 ORTHO05D002804 1.4e-19 99.8 106 50.0
CiPaw.13G099700 Carya illinoinensis HOM05D002619 ORTHO05D002804 2.4e-19 99.0 108 50.9
Cfa011444 Carpinus fangiana HOM05D002619 ORTHO05D002804 3.1e-19 98.6 107 53.3
MBI14_g29800_MAGBIO Magnolia biondii HOM05D002619 ORTHO05D002804 5.3e-19 97.8 108 50.0
MBI14_g44426_MAGBIO Magnolia biondii HOM05D002619 ORTHO05D002804 5.3e-19 97.8 108 50.0
Aqoxy4G03023 Aquilegia oxysepala HOM05D002619 ORTHO05D002804 9.1e-19 97.1 107 50.5
Ciclev10029033m.g Citrus clementina HOM05D002619 ORTHO05D002804 9.1e-19 97.1 107 51.4
Potri.009G027100 Populus trichocarpa HOM05D002619 ORTHO05D002804 1.2e-18 96.7 106 49.1
Potri.018G024900 Populus trichocarpa HOM05D002619 ORTHO05D002804 1.2e-18 96.7 107 50.5
Sabra09G0018200 Salix brachista HOM05D002619 ORTHO05D002804 1.2e-18 96.7 106 47.2
ClCG02G020460 Citrullus lanatus HOM05D002619 ORTHO05D002804 2.0e-18 95.9 106 50.9
Sed0011374 Sechium edule HOM05D002619 ORTHO05D002804 2.6e-18 95.5 107 51.4
MELO3C013675.2 Cucumis melo HOM05D002619 ORTHO05D002804 3.4e-18 95.1 106 50.0
Manes.04G030300 Manihot esculenta HOM05D002619 ORTHO05D002804 3.4e-18 95.1 107 48.6
TWI79G1700 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 5.9e-18 94.4 107 50.5
CsaV3_6G022160 Cucumis sativus L. HOM05D002619 ORTHO05D002804 7.7e-18 94.0 106 50.0
Sabra16G0141400 Salix brachista HOM05D002619 ORTHO05D002804 1.0e-17 93.6 105 46.7
Haze_24026 Corylus avellana HOM05D002619 ORTHO05D002804 1.3e-17 93.2 107 52.3
Peaxi162Scf00406g00007 Petunia axillaris HOM05D002619 ORTHO05D002804 1.3e-17 93.2 106 50.9
RcHm_v2.0_Chr5g0062781 Rosa chinensis HOM05D002619 ORTHO05D002804 1.3e-17 93.2 109 52.3
Manes.11G134700 Manihot esculenta HOM05D002619 ORTHO05D002804 2.2e-17 92.4 105 46.7
FvH4_3g34910 Fragaria vesca HOM05D002619 ORTHO05D002804 2.9e-17 92.0 110 52.7
FAN16G1521 Fragaria x ananassa HOM05D002619 ORTHO05D002804 2.9e-17 92.0 110 53.6
FAN21G0578 Fragaria x ananassa HOM05D002619 ORTHO05D002804 2.9e-17 92.0 110 53.6
FAN25G3511 Fragaria x ananassa HOM05D002619 ORTHO05D002804 2.9e-17 92.0 110 53.6
FAN11G0006 Fragaria x ananassa HOM05D002619 ORTHO05D002804 5.0e-17 91.3 110 52.7
Nitab4.5_0000610g0280 Nicotiana tabacum HOM05D002619 ORTHO05D002804 5.0e-17 91.3 108 50.9
MD03G1100400 Malus domestica HOM05D002619 ORTHO05D002804 8.5e-17 90.5 108 51.9
CAN.G820.11 Capsicum annuum HOM05D002619 ORTHO05D002804 1.1e-16 90.1 106 49.1
Nitab4.5_0003179g0010 Nicotiana tabacum HOM05D002619 ORTHO05D002804 1.4e-16 89.7 106 50.0
TWI31G0042 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 1.4e-16 89.7 108 49.1
Nitab4.5_0000070g0090 Nicotiana tabacum HOM05D002619 ORTHO05D002804 1.9e-16 89.4 106 45.3
Nitab4.5_0011620g0010 Nicotiana tabacum HOM05D002619 ORTHO05D002804 5.5e-16 87.8 106 45.3
GSVIVG01025039001 Vitis vinifera HOM05D002619 ORTHO05D002804 5.5e-16 87.8 106 48.1
Cpa.g.sc252.23 Carica papaya HOM05D002619 ORTHO05D002804 7.2e-16 87.4 106 49.1
Cc01_g04170 Coffea canephora HOM05D002619 ORTHO05D002804 7.2e-16 87.4 106 45.3
MBI05_g38495_MAGBIO Magnolia biondii HOM05D002619 ORTHO05D002804 9.4e-16 87.0 107 49.5
PSO206G0036 Papaver somniferum HOM05D002619 ORTHO05D002804 9.4e-16 87.0 105 48.6
Potri.006G256801 Populus trichocarpa HOM05D002619 ORTHO05D002804 9.4e-16 87.0 105 46.7
Sed0024909 Sechium edule HOM05D002619 ORTHO05D002804 1.2e-15 86.7 108 51.9
Nitab4.5_0003179g0040 Nicotiana tabacum HOM05D002619 ORTHO05D002804 1.6e-15 86.3 106 50.9
CANSAT54G2555 Cannabis sativa HOM05D002619 ORTHO05D002804 2.7e-15 85.5 108 50.0
Nitab4.5_0000610g0270 Nicotiana tabacum HOM05D002619 ORTHO05D002804 3.6e-15 85.1 108 48.1
Nitab4.5_0000610g0250 Nicotiana tabacum HOM05D002619 ORTHO05D002804 6.1e-15 84.3 106 47.2
PSO339G4672 Papaver somniferum HOM05D002619 ORTHO05D002804 8.0e-15 84.0 105 47.6
Sabra18G0027500 Salix brachista HOM05D002619 ORTHO05D002804 1.4e-14 83.2 108 47.2
Peaxi162Scf00406g00012 Petunia axillaris HOM05D002619 ORTHO05D002804 1.8e-14 82.8 106 47.2
Sabra06G0201000 Salix brachista HOM05D002619 ORTHO05D002804 2.3e-14 82.4 106 46.2
DCAR_005304 Daucus carota HOM05D002619 ORTHO05D002804 1.1e-13 80.1 110 47.3
MD11G1114400 Malus domestica HOM05D002619 ORTHO05D002804 1.1e-13 80.1 108 50.9
Oeu041011.1 Olea europaea HOM05D002619 ORTHO05D002804 1.5e-13 79.7 106 48.1
COL.COLO4_18442 Corchorus olitorius HOM05D002619 ORTHO05D002804 2.0e-13 79.3 108 45.4
Potri.008G010100 Populus trichocarpa HOM05D002619 ORTHO05D002804 2.6e-13 79.0 108 49.1
Nitab4.5_0003179g0060 Nicotiana tabacum HOM05D002619 ORTHO05D002804 4.4e-13 78.2 106 43.4
Sabra06G0200800 Salix brachista HOM05D002619 ORTHO05D002804 4.4e-13 78.2 106 44.3
Oeu062318.1 Olea europaea HOM05D002619 ORTHO05D002804 9.7e-13 77.0 106 45.3
MSTRG.21180 Avicennia marina HOM05D002619 ORTHO05D002804 3.7e-12 75.1 107 41.1
Cc01_g12250 Coffea canephora HOM05D002619 ORTHO05D002804 4.8e-12 74.7 106 44.3
ECA248G0080 Erigeron canadensis HOM05D002619 ORTHO05D002804 8.2e-12 73.9 106 45.3
Dinv26273 Davidia involucrata HOM05D002619 ORTHO05D002804 2.4e-11 72.4 106 44.3
PGSC0003DMG400015561 Solanum tuberosum HOM05D002619 ORTHO05D002804 3.1e-11 72.0 109 45.0
Sabra08G0006000 Salix brachista HOM05D002619 ORTHO05D002804 1.2e-10 70.1 108 48.1
TWI75G1695 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 3.5e-10 68.6 107 39.3
Lj2P1052T44 Lonicera japonica HOM05D002619 ORTHO05D002804 4.5e-10 68.2 110 42.7
Lsat_1_v5_gn_5_166460 Lactuca sativa HOM05D002619 ORTHO05D002804 5.9e-10 67.8 106 41.5
Eucgr.B00641 Eucalyptus grandis HOM05D002619 ORTHO05D002804 1.0e-09 67.0 107 42.1
Lj1A161T60 Lonicera japonica HOM05D002619 ORTHO05D002804 1.0e-09 67.0 88 45.5
Hma1.2p1_0846F.1_g227640 Hydrangea macrophylla HOM05D002619 ORTHO05D002804 1.3e-09 66.6 106 39.6
CAN.G241.40 Capsicum annuum HOM05D002619 ORTHO05D002804 1.7e-09 66.2 108 44.4
Peaxi162Scf00356g00031 Petunia axillaris HOM05D002619 ORTHO05D002804 1.7e-09 66.2 106 39.6
HanXRQChr11g0340291 Helianthus annuus HOM05D002619 ORTHO05D002804 2.2e-09 65.9 106 42.5
ECA247G1124 Erigeron canadensis HOM05D002619 ORTHO05D002804 2.9e-09 65.5 106 40.6
THA.LOC104800642 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 3.8e-09 65.1 108 39.8
Hma1.2p1_0035F.1_g022040 Hydrangea macrophylla HOM05D002619 ORTHO05D002804 6.5e-09 64.3 108 42.6
GSVIVG01025607001 Vitis vinifera HOM05D000001 ORTHO05D009784 8.5e-09 63.9 107 41.1
DCAR_006005 Daucus carota HOM05D002619 ORTHO05D002804 1.5e-08 63.2 112 42.9
Gohir.A07G095600 Gossypium hirsutum HOM05D002619 ORTHO05D002804 1.5e-08 63.2 109 41.3
Gohir.D03G130000 Gossypium hirsutum HOM05D002619 ORTHO05D002804 1.5e-08 63.2 107 42.1
Gorai.003G136700 Gossypium raimondii HOM05D002619 ORTHO05D002804 1.5e-08 63.2 107 42.1
ClCG03G001850 Citrullus lanatus HOM05D002619 ORTHO05D002804 2.5e-08 62.4 109 39.4
Glyma.11G143300 Glycine max HOM05D002619 ORTHO05D002804 4.2e-08 61.6 108 40.7
HanXRQChr01g0009911 Helianthus annuus HOM05D002619 ORTHO05D002804 5.5e-08 61.2 108 40.7
CARHR121800 Cardamine hirsuta HOM05D002619 ORTHO05D002804 9.4e-08 60.5 106 34.9
Glyma.12G066500 Glycine max HOM05D002619 ORTHO05D002804 9.4e-08 60.5 108 40.7
Gorai.001G107800 Gossypium raimondii HOM05D002619 ORTHO05D002804 1.2e-07 60.1 107 39.3
MSTRG.12631 Avicennia marina HOM05D002619 ORTHO05D002804 2.1e-07 59.3 106 35.8
MSTRG.18597 Avicennia marina HOM05D002619 ORTHO05D002804 2.1e-07 59.3 106 38.7
Rhsim01G0224500 Rhododendron simsii HOM05D002619 ORTHO05D002804 2.1e-07 59.3 106 39.6
Gohir.D07G099900 Gossypium hirsutum HOM05D002619 ORTHO05D002804 2.7e-07 58.9 107 39.3
AT2G28690 Arabidopsis thaliana HOM05D002619 ORTHO05D002804 1.4e-06 56.6 106 34.9
Ca_01347_v3 Cicer arietinum L. HOM05D002619 ORTHO05D002804 1.4e-06 56.6 106 45.3
Ca_27691_v3 Cicer arietinum L. HOM05D002619 ORTHO05D002804 1.4e-06 56.6 106 45.3
QL07p046673 Quercus lobata HOM05D002619 ORTHO05D002804 1.4e-06 56.6 107 35.5
Medtr2g096360 Medicago truncatula HOM05D002619 ORTHO05D002804 1.8e-06 56.2 106 40.6
Sed0021945 Sechium edule HOM05D002619 ORTHO05D002804 1.8e-06 56.2 108 39.8
DCAR_015599 Daucus carota HOM05D002619 ORTHO05D002804 2.3e-06 55.8 104 38.5
TPR.G1014 Trifolium pratense HOM05D002619 ORTHO05D002804 2.3e-06 55.8 106 38.7
AL4G23230 Arabidopsis lyrata HOM05D002619 ORTHO05D002804 4.0e-06 55.1 105 33.3
Lj3g0007491 Lotus japonicus HOM05D002619 ORTHO05D002804 4.0e-06 55.1 109 41.3
Thhalv10017181m.g Eutrema salsugineum HOM05D002619 ORTHO05D002804 5.2e-06 54.7 107 35.5
Prupe.6G248900 Prunus persica HOM05D000001 ORTHO05D009784 6.7e-06 54.3 105 33.3
Atru.chr3.3814 Acer truncatum HOM05D002619 ORTHO05D002804 8.8e-06 53.9 118 39.0
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 8.8e-06 53.9 106 39.6
HanXRQChr08g0228281 Helianthus annuus HOM05D002619 ORTHO05D002804 8.8e-06 53.9 106 36.8


User provided reference genes

Program Settings