Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn3g16362 Nelumbo nucifera HOM05D004052 ORTHO05D004694 2.0e-56 222.2 118 100.0
Nn3g20784 Nelumbo nucifera HOM05D004052 ORTHO05D004694 3.8e-26 121.7 157 53.5
Nn4g26569 Nelumbo nucifera HOM05D004052 ORTHO05D004694 2.7e-16 89.0 157 44.6
RcHm_v2.0_Chr5g0027741 Rosa chinensis HOM05D004052 ORTHO05D004694 1.6e-13 79.7 157 38.2
TAR629G3304 Trochodendron aralioides HOM05D004052 ORTHO05D004694 4.8e-13 78.2 162 41.4
CANSAT94G0014 Cannabis sativa HOM05D004052 ORTHO05D004694 3.1e-12 75.5 162 35.8
MD05G1208600 Malus domestica HOM05D004052 ORTHO05D004694 3.1e-12 75.5 156 38.5
Sabra16G0248900 Salix brachista HOM05D004052 ORTHO05D004694 9.0e-12 73.9 92 52.2
GSVIVG01038086001 Vitis vinifera HOM05D004052 ORTHO05D004694 9.0e-12 73.9 158 39.9
THA.LOC104812292 Tarenaya hassleriana HOM05D004052 ORTHO05D004694 1.2e-11 73.6 54 77.8
Gohir.A01G041900 Gossypium hirsutum HOM05D004052 ORTHO05D004694 2.0e-11 72.8 159 35.8
Manes.15G101600 Manihot esculenta HOM05D004052 ORTHO05D004694 2.0e-11 72.8 157 38.9
Nn1g00734 Nelumbo nucifera HOM05D049830 ORTHO05D004694 2.0e-11 72.8 46 87.0
Potri.001G377900 Populus trichocarpa HOM05D004052 ORTHO05D004694 2.0e-11 72.8 92 52.2
arahy.Tifrunner.gnm1.ann1.SLVF1G Arachis hypogaea HOM05D004052 ORTHO05D004694 2.6e-11 72.4 63 63.5
FvH4_3g16600 Fragaria vesca HOM05D004052 ORTHO05D004694 3.4e-11 72.0 92 48.9
FAN11G2946 Fragaria x ananassa HOM05D004052 ORTHO05D004694 3.4e-11 72.0 92 48.9
FAN16G0069 Fragaria x ananassa HOM05D004052 ORTHO05D004694 3.4e-11 72.0 92 48.9
Manes.03G091016 Manihot esculenta HOM05D004052 ORTHO05D004694 3.4e-11 72.0 152 40.1
Ciclev10020573m.g Citrus clementina HOM05D004052 ORTHO05D004694 4.5e-11 71.6 157 36.9
Prupe.4G148800 Prunus persica HOM05D004052 ORTHO05D004694 4.5e-11 71.6 160 36.2
QL04p070259 Quercus lobata HOM05D004052 ORTHO05D004694 4.5e-11 71.6 162 37.7
Gorai.002G038800 Gossypium raimondii HOM05D004052 ORTHO05D004694 5.8e-11 71.2 159 35.2
FAN21G2550 Fragaria x ananassa HOM05D004052 ORTHO05D004694 7.6e-11 70.9 155 34.2
Ca_03392_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 1.3e-10 70.1 89 59.6
Ca_29679_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 1.3e-10 70.1 89 59.6
MBI10_g30421_MAGBIO Magnolia biondii HOM05D004052 ORTHO05D004694 1.3e-10 70.1 100 51.0
Nn5g31013 Nelumbo nucifera HOM05D049830 ORTHO05D004694 1.3e-10 70.1 53 75.5
Gohir.D01G029700 Gossypium hirsutum HOM05D004052 ORTHO05D004694 1.7e-10 69.7 159 34.6
Oeu001302.1 Olea europaea HOM05D004052 ORTHO05D004694 2.2e-10 69.3 166 38.0
Rhsim06G0184900 Rhododendron simsii HOM05D004052 ORTHO05D004694 2.2e-10 69.3 154 41.6
Eucgr.E02738 Eucalyptus grandis HOM05D004052 ORTHO05D004694 2.9e-10 68.9 99 48.5
FAN25G3263 Fragaria x ananassa HOM05D004052 ORTHO05D004694 2.9e-10 68.9 84 52.4
Cpa.g.sc77.96 Carica papaya HOM05D004052 ORTHO05D004694 3.8e-10 68.6 92 48.9
Phvul.005G060700 Phaseolus vulgaris HOM05D004052 ORTHO05D004694 3.8e-10 68.6 59 64.4
Dinv26667 Davidia involucrata HOM05D004052 ORTHO05D004694 4.9e-10 68.2 85 57.6
Atru.chr2.1894 Acer truncatum HOM05D004052 ORTHO05D004694 6.4e-10 67.8 158 38.6
Eucgr.E02731 Eucalyptus grandis HOM05D004052 ORTHO05D004694 6.4e-10 67.8 99 47.5
CSS0033427 Camellia sinensis var. sinensis HOM05D004052 ORTHO05D004694 8.4e-10 67.4 160 39.4
Cfa019455 Carpinus fangiana HOM05D004052 ORTHO05D004694 8.4e-10 67.4 162 37.0
Eucgr.F03205 Eucalyptus grandis HOM05D004052 ORTHO05D004694 8.4e-10 67.4 76 56.6
Eucgr.L01921 Eucalyptus grandis HOM05D004052 ORTHO05D004694 8.4e-10 67.4 99 48.5
Eucgr.L01015 Eucalyptus grandis HOM05D004052 ORTHO05D004694 1.1e-09 67.0 99 47.5
Medtr2g070730 Medicago truncatula HOM05D004052 ORTHO05D004694 1.1e-09 67.0 65 61.5
CiPaw.12G045700 Carya illinoinensis HOM05D004052 ORTHO05D004694 1.4e-09 66.6 76 56.6
arahy.Tifrunner.gnm1.ann1.15VG0N Arachis hypogaea HOM05D004052 ORTHO05D004694 1.9e-09 66.2 143 38.5
COL.COLO4_17418 Corchorus olitorius HOM05D004052 ORTHO05D004694 1.9e-09 66.2 157 35.7
Duzib268G0054 Durio zibethinus HOM05D004052 ORTHO05D004694 1.9e-09 66.2 162 34.0
Aqoxy7G03971 Aquilegia oxysepala HOM05D004052 ORTHO05D004694 2.4e-09 65.9 158 31.6
DCAR_019621 Daucus carota HOM05D004052 ORTHO05D004694 3.2e-09 65.5 85 57.6
Dinv13312 Davidia involucrata HOM05D004052 ORTHO05D004694 3.2e-09 65.5 84 57.1
Medtr8g008740 Medicago truncatula HOM05D000280 ORTHO05D000632 3.2e-09 65.5 56 60.7
vmacro12015 Vaccinium macrocarpon HOM05D004052 ORTHO05D004694 3.2e-09 65.5 82 57.3
Nitab4.5_0001662g0050 Nicotiana tabacum HOM05D004052 ORTHO05D004694 5.5e-09 64.7 87 54.0
TPR.G26614 Trifolium pratense HOM05D004052 ORTHO05D004694 5.5e-09 64.7 59 64.4
Actinidia04591 Actinidia chinensis HOM05D004052 ORTHO05D004694 7.1e-09 64.3 158 38.0
Actinidia12841 Actinidia chinensis HOM05D004052 ORTHO05D004694 7.1e-09 64.3 159 36.5
Duzib213G0683 Durio zibethinus HOM05D004052 ORTHO05D004694 7.1e-09 64.3 157 34.4
Haze_08491 Corylus avellana HOM05D004052 ORTHO05D004694 9.3e-09 63.9 162 37.0
PSO541G0468 Papaver somniferum HOM05D004052 ORTHO05D004694 9.3e-09 63.9 96 44.8
Peaxi162Scf00111g00086 Petunia axillaris HOM05D004052 ORTHO05D004694 9.3e-09 63.9 158 38.0
Thecc.07G146300 Theobroma cacao HOM05D004052 ORTHO05D004694 1.2e-08 63.5 157 34.4
Hma1.2p1_1456F.1_g284600 Hydrangea macrophylla HOM05D004052 ORTHO05D004694 1.6e-08 63.2 162 34.6
Lalb_Chr25g0285401 Lupinus albus HOM05D004052 ORTHO05D004694 2.7e-08 62.4 63 61.9
PSO675G8138 Papaver somniferum HOM05D004052 ORTHO05D004694 2.7e-08 62.4 96 44.8
Sopen07g029990 Solanum pennellii HOM05D004052 ORTHO05D004694 2.7e-08 62.4 61 65.6
Actinidia35175 Actinidia chinensis HOM05D004052 ORTHO05D004694 3.5e-08 62.0 154 37.7
Oeu006133.1 Olea europaea HOM05D004052 ORTHO05D004694 3.5e-08 62.0 98 43.9
Oeu020015.2 Olea europaea HOM05D004052 ORTHO05D004694 3.5e-08 62.0 139 38.1
Cc05_g10320 Coffea canephora HOM05D004052 ORTHO05D004694 4.6e-08 61.6 158 34.8
Lsat_1_v5_gn_5_125041 Lactuca sativa HOM05D004052 ORTHO05D004694 4.6e-08 61.6 85 52.9
Glyma.13G259200 Glycine max HOM05D004052 ORTHO05D004694 7.9e-08 60.8 151 36.4
Lj1A816T35 Lonicera japonica HOM05D004052 ORTHO05D004694 7.9e-08 60.8 60 61.7
AT1G78430 Arabidopsis thaliana HOM05D004052 ORTHO05D004694 1.0e-07 60.5 43 72.1
PGR031G1077 Punica granatum HOM05D004052 ORTHO05D004694 1.3e-07 60.1 66 54.5
TPR.G22987 Trifolium pratense HOM05D004052 ORTHO05D004694 1.3e-07 60.1 57 57.9
vmacro09432 Vaccinium macrocarpon HOM05D004052 ORTHO05D004694 1.3e-07 60.1 154 36.4
MSTRG.12848 Avicennia marina HOM05D004052 ORTHO05D004694 1.8e-07 59.7 103 38.8
Psat1g001080 Pisum sativum HOM05D004052 ORTHO05D004694 1.8e-07 59.7 66 59.1
Gorai.009G359700 Gossypium raimondii HOM05D004052 ORTHO05D004694 2.3e-07 59.3 89 49.4
Nitab4.5_0002495g0040 Nicotiana tabacum HOM05D004052 ORTHO05D004694 2.3e-07 59.3 50 66.0
RhsimUnG0204400 Rhododendron simsii HOM05D004052 ORTHO05D004694 2.3e-07 59.3 154 35.1
Solyc07g056650.4 Solanum lycopersicum HOM05D004052 ORTHO05D004694 2.3e-07 59.3 60 63.3
PGSC0003DMG400027647 Solanum tuberosum HOM05D004052 ORTHO05D004694 2.3e-07 59.3 159 37.1
Nitab4.5_0000639g0180 Nicotiana tabacum HOM05D004052 ORTHO05D004694 3.0e-07 58.9 147 37.4
Glyma.15G248900 Glycine max HOM05D004052 ORTHO05D004694 8.7e-07 57.4 149 33.6
AL2G38800 Arabidopsis lyrata HOM05D004052 ORTHO05D004694 1.1e-06 57.0 42 71.4
Thhalv10019440m.g Eutrema salsugineum HOM05D004052 ORTHO05D004694 1.1e-06 57.0 43 69.8
ECA234G3832 Erigeron canadensis HOM05D004052 ORTHO05D004694 1.9e-06 56.2 101 41.6
Gohir.A04G046520 Gossypium hirsutum HOM05D004052 ORTHO05D004694 1.9e-06 56.2 89 47.2
BcaB02g07171 Brassica carinata HOM05D004052 ORTHO05D004694 2.5e-06 55.8 42 66.7
CAN.G1003.5 Capsicum annuum HOM05D004052 ORTHO05D004694 2.5e-06 55.8 159 37.7
EL10Ac4g08490 Beta vulgaris HOM05D004052 ORTHO05D004694 3.3e-06 55.5 86 37.2
Nitab4.5_0000505g0150 Nicotiana tabacum HOM05D004052 ORTHO05D004694 3.3e-06 55.5 55 54.5
VMungo1080G1119 Vigna mungo HOM05D004052 ORTHO05D004694 3.3e-06 55.5 157 33.8
Ah.06g187480 Amaranthus hybridus HOM05D004052 ORTHO05D004694 5.6e-06 54.7 89 44.9
Hund02320 Selenicereus undatus HOM05D004052 ORTHO05D004694 5.6e-06 54.7 61 59.0
Ah.04g163830 Amaranthus hybridus HOM05D004052 ORTHO05D004694 7.4e-06 54.3 82 42.7
Oeu009879.2 Olea europaea HOM05D004052 ORTHO05D004694 7.4e-06 54.3 129 35.7
Lj8P142T42 Lonicera japonica HOM05D004052 ORTHO05D004694 9.6e-06 53.9 158 34.2


User provided reference genes

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