Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15981 Nelumbo nucifera HOM05D000311 ORTHO05D000183 3.1e-53 211.5 102 100.0
Nn2g15980 Nelumbo nucifera HOM05D000311 ORTHO05D000183 1.7e-30 136.0 65 100.0
Eucgr.C04320 Eucalyptus grandis HOM05D000311 ORTHO05D000183 1.4e-16 89.7 85 54.1
Duzib212G0621 Durio zibethinus HOM05D000311 ORTHO05D000183 3.7e-14 81.6 83 53.0
Nitab4.5_0003058g0030 Nicotiana tabacum HOM05D000311 ORTHO05D000183 1.4e-13 79.7 96 46.9
QL04p004403 Quercus lobata HOM05D000311 ORTHO05D000183 6.0e-12 74.3 96 45.8
Peaxi162Scf00152g01341 Petunia axillaris HOM05D000311 ORTHO05D000183 1.7e-11 72.8 68 57.4
Oeu029749.1 Olea europaea HOM05D000311 ORTHO05D000183 3.9e-11 71.6 83 50.6
QL93p0073_0079 Quercus lobata HOM05D000311 ORTHO05D000183 5.0e-11 71.2 75 52.0
Lj3g0000840 Lotus japonicus HOM05D000094 ORTHO05D000455 8.6e-11 70.5 104 43.3
QL04p004305 Quercus lobata HOM05D000311 ORTHO05D000183 8.6e-11 70.5 92 46.7
GSVIVG01012806001 Vitis vinifera HOM05D000191 ORTHO05D000122 8.6e-11 70.5 71 54.9
Ciclev10030334m.g Citrus clementina HOM05D000053 ORTHO05D000035 1.5e-10 69.7 88 43.2
Nn2g15974 Nelumbo nucifera HOM05D000311 ORTHO05D000183 1.5e-10 69.7 64 60.9
Nn2g15943 Nelumbo nucifera HOM05D000311 ORTHO05D000183 1.9e-10 69.3 47 72.3
Eucgr.C04317 Eucalyptus grandis HOM05D000311 ORTHO05D000183 3.3e-10 68.6 108 39.8
HanXRQChr04g0097591 Helianthus annuus HOM05D000311 ORTHO05D000183 4.3e-10 68.2 90 42.2
Actinidia04232 Actinidia chinensis HOM05D000311 ORTHO05D000183 9.5e-10 67.0 114 38.6
DCAR_016313 Daucus carota HOM05D000021 ORTHO05D000010 9.5e-10 67.0 92 40.2
Cfa012621 Carpinus fangiana HOM05D000071 ORTHO05D000029 4.7e-09 64.7 80 52.5
Lsat_1_v5_gn_4_163920 Lactuca sativa HOM05D000033 ORTHO05D002493 4.7e-09 64.7 97 36.1
RhsimUnG0134000 Rhododendron simsii HOM05D008944 ORTHO05D012715 4.7e-09 64.7 115 37.4
Glyma.16G210100 Glycine max HOM05D000033 ORTHO05D010048 1.1e-08 63.5 86 43.0
Peaxi162Scf00263g00614 Petunia axillaris HOM05D000029 ORTHO05D002519 1.1e-08 63.5 97 41.2
RhsimUnG0143600 Rhododendron simsii HOM05D000071 ORTHO05D000029 1.1e-08 63.5 80 45.0
Dinv35862 Davidia involucrata HOM05D008203 ORTHO05D010058 1.4e-08 63.2 115 33.9
Ciclev10023378m.g Citrus clementina HOM05D000033 ORTHO05D010048 1.8e-08 62.8 86 41.9
ECA240G2696 Erigeron canadensis HOM05D000033 ORTHO05D010114 1.8e-08 62.8 98 37.8
Medtr6g069030 Medicago truncatula HOM05D000033 ORTHO05D010048 1.8e-08 62.8 92 41.3
vmacro17923 Vaccinium macrocarpon HOM05D000033 ORTHO05D010048 1.8e-08 62.8 90 38.9
Dinv08773 Davidia involucrata HOM05D000311 ORTHO05D000183 2.3e-08 62.4 52 51.9
FAN10G4146 Fragaria x ananassa HOM05D000071 ORTHO05D000029 4.0e-08 61.6 84 42.9
Oeu029750.1 Olea europaea HOM05D000311 ORTHO05D000183 4.0e-08 61.6 94 44.7
Eucgr.H00667 Eucalyptus grandis HOM05D000033 ORTHO05D010048 5.2e-08 61.2 86 41.9
Duzib187G0962 Durio zibethinus HOM05D000311 ORTHO05D000183 6.8e-08 60.8 81 44.4
Hma1.2p1_0949F.1_g240700 Hydrangea macrophylla HOM05D000311 ORTHO05D000183 6.8e-08 60.8 80 42.5
TWI34G0710 Tripterygium wilfordii HOM05D000311 ORTHO05D000183 6.8e-08 60.8 110 39.1
Ciclev10018213m.g Citrus clementina HOM05D000053 ORTHO05D000035 8.9e-08 60.5 89 40.4
Atru.chr9.40 Acer truncatum HOM05D000033 ORTHO05D010048 1.2e-07 60.1 88 38.6
Sabra16G0188800 Salix brachista HOM05D000033 ORTHO05D002493 1.2e-07 60.1 97 36.1
Cc10_g14210 Coffea canephora HOM05D000029 ORTHO05D002519 1.5e-07 59.7 78 44.9
HanXRQChr15g0491721 Helianthus annuus HOM05D000033 ORTHO05D002493 1.5e-07 59.7 78 38.5
DCAR_011687 Daucus carota HOM05D000033 ORTHO05D010048 2.0e-07 59.3 86 40.7
Migut.B00620 Erythranthe guttata HOM05D000033 ORTHO05D010114 2.0e-07 59.3 93 40.9
Glyma.09G160600 Glycine max HOM05D000033 ORTHO05D010048 2.0e-07 59.3 108 38.0
TPR.G31351 Trifolium pratense HOM05D000033 ORTHO05D010048 2.0e-07 59.3 87 41.4
VMungo0464G0133 Vigna mungo HOM05D000033 ORTHO05D010048 2.0e-07 59.3 86 44.2
PSO421G0084 Papaver somniferum HOM05D000071 ORTHO05D003524 2.6e-07 58.9 91 41.8
CiPaw.02G049300 Carya illinoinensis HOM05D000311 ORTHO05D000183 3.4e-07 58.5 83 41.0
Haze_18396 Corylus avellana HOM05D000033 ORTHO05D010048 3.4e-07 58.5 96 36.5
Haze_19943 Corylus avellana HOM05D001169 ORTHO05D001002 3.4e-07 58.5 68 47.1
Os06g0638500 Oryza sativa ssp. japonica HOM05D000033 ORTHO05D002493 3.4e-07 58.5 97 32.0
Phvul.004G136100 Phaseolus vulgaris HOM05D000033 ORTHO05D010048 3.4e-07 58.5 86 41.9
TPR.G39360 Trifolium pratense HOM05D000053 ORTHO05D000035 3.4e-07 58.5 78 44.9
arahy.Tifrunner.gnm1.ann1.58NNF2 Arachis hypogaea HOM05D000033 ORTHO05D010048 4.4e-07 58.2 88 39.8
Duzib052G1210 Durio zibethinus HOM05D000033 ORTHO05D002493 4.4e-07 58.2 99 36.4
Gohir.D05G376232 Gossypium hirsutum HOM05D000053 ORTHO05D000035 4.4e-07 58.2 70 48.6
Nitab4.5_0011704g0010 Nicotiana tabacum HOM05D000311 ORTHO05D000183 4.4e-07 58.2 76 44.7
Oeu047364.1 Olea europaea HOM05D000033 ORTHO05D010114 4.4e-07 58.2 88 39.8
CAN.G1564.1 Capsicum annuum HOM05D000029 ORTHO05D002519 5.8e-07 57.8 80 43.8
AUR62015078 Chenopodium quinoa HOM05D000053 ORTHO05D000035 5.8e-07 57.8 86 38.4
Gohir.D02G026566 Gossypium hirsutum HOM05D000311 ORTHO05D000183 5.8e-07 57.8 54 50.0
Gohir.D05G375550 Gossypium hirsutum HOM05D000053 ORTHO05D000035 5.8e-07 57.8 70 47.1
Manes.14G120121 Manihot esculenta HOM05D000311 ORTHO05D000183 5.8e-07 57.8 86 44.2
Psat2g098920 Pisum sativum HOM05D001169 ORTHO05D000029 5.8e-07 57.8 83 44.6
Psat1g118000 Pisum sativum HOM05D000033 ORTHO05D010048 7.5e-07 57.4 102 36.3
BolC6t37292H Brassica oleracea HOM05D000311 ORTHO05D000183 9.8e-07 57.0 91 42.9
DCAR_012607 Daucus carota HOM05D000053 ORTHO05D000035 9.8e-07 57.0 78 42.3
HanXRQChr11g0350281 Helianthus annuus HOM05D000033 ORTHO05D010048 9.8e-07 57.0 87 39.1
Aa31LG5G18720 Aethionema arabicum HOM05D000033 ORTHO05D000913 1.3e-06 56.6 93 37.6
ATR0720G001 Amborella trichopoda HOM05D010684 ORTHO05D012438 1.3e-06 56.6 84 38.1
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 1.3e-06 56.6 102 38.2
Eucgr.A00700 Eucalyptus grandis HOM05D000053 ORTHO05D000448 1.3e-06 56.6 84 42.9
TWI31G0157 Tripterygium wilfordii HOM05D000033 ORTHO05D002493 1.3e-06 56.6 97 35.1
HPP92_010756 Vanilla planifolia HOM05D000029 ORTHO05D002586 1.3e-06 56.6 78 44.9
HPP92_010757 Vanilla planifolia HOM05D000029 ORTHO05D002586 1.3e-06 56.6 78 44.9
CSS0006016 Camellia sinensis var. sinensis HOM05D000311 ORTHO05D000183 1.7e-06 56.2 102 37.3
Duzib132G0155 Durio zibethinus HOM05D000033 ORTHO05D002493 1.7e-06 56.2 97 35.1
FAN25G1354 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.7e-06 56.2 93 35.5
Gorai.009G448300 Gossypium raimondii HOM05D000053 ORTHO05D000035 1.7e-06 56.2 92 40.2
MBI06_g39057_MAGBIO Magnolia biondii HOM05D000033 ORTHO05D010048 1.7e-06 56.2 86 41.9
Oeu018598.1 Olea europaea HOM05D000033 ORTHO05D002493 1.7e-06 56.2 97 34.0
RcHm_v2.0_Chr5g0082631 Rosa chinensis HOM05D000071 ORTHO05D000029 1.7e-06 56.2 75 44.0
Gorai.010G228600 Gossypium raimondii HOM05D000311 ORTHO05D000183 2.2e-06 55.8 81 38.3
Manes.10G073600 Manihot esculenta HOM05D000033 ORTHO05D002493 2.2e-06 55.8 99 36.4
Potri.004G066300 Populus trichocarpa HOM05D000033 ORTHO05D010048 2.2e-06 55.8 104 36.5
TAR628G0999 Trochodendron aralioides HOM05D000033 ORTHO05D002493 2.2e-06 55.8 97 34.0
MSTRG.25326 Avicennia marina HOM05D000029 ORTHO05D002519 2.9e-06 55.5 80 42.5
CSS0008473 Camellia sinensis var. sinensis HOM05D000033 ORTHO05D002493 2.9e-06 55.5 74 39.2
Cc00_g01540 Coffea canephora HOM05D000033 ORTHO05D010048 2.9e-06 55.5 87 37.9
Medtr3g047950 Medicago truncatula HOM05D000824 ORTHO05D002221 2.9e-06 55.5 101 34.7
Sabra04G0044300 Salix brachista HOM05D000033 ORTHO05D010048 2.9e-06 55.5 104 36.5
Cpa.g.sc106.88 Carica papaya HOM05D000033 ORTHO05D002493 3.7e-06 55.1 83 37.3
Gohir.A06G188366 Gossypium hirsutum HOM05D000311 ORTHO05D000183 3.7e-06 55.1 81 37.0
MBI06_g43812_MAGBIO Magnolia biondii HOM05D000033 ORTHO05D010048 3.7e-06 55.1 86 40.7
Prupe.1G067000 Prunus persica HOM05D000071 ORTHO05D000029 3.7e-06 55.1 95 37.9
Sed0008361 Sechium edule HOM05D000071 ORTHO05D000029 3.7e-06 55.1 78 39.7
GSVIVG01024236001 Vitis vinifera HOM05D000033 ORTHO05D010048 3.7e-06 55.1 86 39.5
Ciclev10017447m.g Citrus clementina HOM05D000053 ORTHO05D000035 4.9e-06 54.7 82 41.5
Oeu038391.1 Olea europaea HOM05D000033 ORTHO05D010048 4.9e-06 54.7 86 39.5
Thecc.02G107300 Theobroma cacao HOM05D000033 ORTHO05D002493 4.9e-06 54.7 99 35.4
Duzib068G0727 Durio zibethinus HOM05D000033 ORTHO05D010048 6.4e-06 54.3 87 37.9
FvH4_6g22790 Fragaria vesca HOM05D001169 ORTHO05D001002 6.4e-06 54.3 64 48.4
FAN14G1472 Fragaria x ananassa HOM05D001169 ORTHO05D001002 6.4e-06 54.3 64 48.4
Gorai.002G060500 Gossypium raimondii HOM05D000053 ORTHO05D000035 6.4e-06 54.3 71 47.9
Manes.06G044000 Manihot esculenta HOM05D000311 ORTHO05D000183 6.4e-06 54.3 42 59.5
Medtr5g086620 Medicago truncatula HOM05D000053 ORTHO05D000035 6.4e-06 54.3 89 36.0
THA.LOC104807834 Tarenaya hassleriana HOM05D001213 ORTHO05D001042 6.4e-06 54.3 83 37.3
Zm00001eb267480 Zea mays HOM05D001169 ORTHO05D001002 6.4e-06 54.3 72 43.1
Cc02_g19220 Coffea canephora HOM05D000033 ORTHO05D002493 8.3e-06 53.9 97 33.0
Eucgr.J01521 Eucalyptus grandis HOM05D000033 ORTHO05D001688 8.3e-06 53.9 86 39.5
FvH4_4g04540 Fragaria vesca HOM05D000132 ORTHO05D000058 8.3e-06 53.9 80 37.5
FAN02G2473 Fragaria x ananassa HOM05D001169 ORTHO05D001002 8.3e-06 53.9 64 48.4
Gohir.D06G196132 Gossypium hirsutum HOM05D000311 ORTHO05D000183 8.3e-06 53.9 81 37.0
Hma1.2p1_0107F.1_g051550 Hydrangea macrophylla HOM05D000029 ORTHO05D002519 8.3e-06 53.9 78 43.6
Nitab4.5_0006274g0030 Nicotiana tabacum HOM05D000053 ORTHO05D000035 8.3e-06 53.9 86 37.2
RcHm_v2.0_Chr6g0255401 Rosa chinensis HOM05D000033 ORTHO05D002493 8.3e-06 53.9 97 32.0


User provided reference genes

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