Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 9.2e-212 740.0 374 100.0
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 2.6e-113 412.9 277 77.3
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 2.7e-102 376.3 290 69.3
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 2.1e-99 366.7 290 65.2
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 1.7e-96 357.1 317 60.3
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 7.1e-95 351.7 292 66.1
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 1.4e-90 337.4 292 60.6
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 1.9e-87 327.0 300 59.3
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 5.4e-87 325.5 281 61.2
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 1.6e-86 323.9 297 58.9
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 1.7e-85 320.5 294 59.9
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 2.5e-84 316.6 285 58.9
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 4.3e-84 315.8 292 57.2
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 4.3e-84 315.8 291 57.0
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 7.3e-84 315.1 289 56.7
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 7.3e-84 315.1 270 60.4
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 3.6e-83 312.8 290 55.9
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 3.6e-83 312.8 290 55.9
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.8e-82 310.5 295 55.6
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.4e-82 310.1 285 56.5
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.2e-81 307.8 266 61.3
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.5e-81 307.4 267 61.0
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 2.0e-81 307.0 266 60.9
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 2.6e-81 306.6 289 57.1
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 3.4e-81 306.2 293 56.3
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 5.8e-81 305.4 283 55.1
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 2.2e-80 303.5 293 56.0
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 3.8e-80 302.8 269 58.7
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 8.4e-80 301.6 285 58.2
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 1.1e-79 301.2 255 60.8
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 3.2e-79 299.7 291 54.3
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 5.4e-79 298.9 282 55.3
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 9.3e-79 298.1 267 58.1
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 1.2e-78 297.7 266 55.3
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 1.2e-78 297.7 268 57.5
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 1.6e-78 297.4 250 60.4
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 2.1e-78 297.0 245 60.4
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.7e-78 296.6 280 55.0
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 4.6e-78 295.8 271 57.9
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.0e-77 294.7 292 53.1
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 1.0e-77 294.7 290 54.1
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.0e-77 294.7 293 56.3
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 5.1e-77 292.4 260 58.1
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 8.7e-77 291.6 284 56.0
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 1.1e-76 291.2 272 57.0
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 3.7e-75 286.2 281 54.8
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 3.7e-75 286.2 298 54.7
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 4.8e-75 285.8 279 55.2
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 4.8e-75 285.8 268 56.7
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 8.1e-75 285.0 288 52.4
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 1.4e-74 284.3 288 52.1
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 4.0e-74 282.7 268 55.2
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 5.3e-74 282.3 296 54.7
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 9.0e-74 281.6 288 55.6
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 1.5e-73 280.8 283 56.2
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 5.8e-73 278.9 288 52.4
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 1.3e-72 277.7 255 56.5
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 2.9e-72 276.6 289 52.9
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 3.8e-72 276.2 291 51.5
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 4.2e-71 272.7 292 51.7
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 5.5e-71 272.3 284 50.7
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 5.5e-71 272.3 341 48.4
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 7.1e-71 271.9 291 50.5
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 9.3e-71 271.6 291 50.2
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 2.1e-70 270.4 282 52.5
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 3.5e-70 269.6 286 51.0
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 6.0e-70 268.9 292 49.3
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 6.0e-70 268.9 292 49.3
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 6.0e-70 268.9 292 49.3
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 6.0e-70 268.9 248 57.3
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 7.9e-70 268.5 293 50.2
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.3e-69 267.7 292 50.7
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 1.3e-69 267.7 290 47.9
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 1.8e-69 267.3 291 51.2
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 1.8e-69 267.3 311 47.9
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 3.9e-69 266.2 286 50.3
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 5.1e-69 265.8 290 48.6
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 6.7e-69 265.4 277 52.0
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 8.7e-69 265.0 292 50.3
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.1e-68 264.6 286 50.0
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 1.1e-68 264.6 290 49.0
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 1.1e-68 264.6 290 49.0
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.9e-68 263.8 292 49.0
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 3.3e-68 263.1 292 48.3
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 3.3e-68 263.1 292 48.3
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 4.3e-68 262.7 249 55.4
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 9.6e-68 261.5 294 48.0
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 1.3e-67 261.2 290 48.3
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 1.3e-67 261.2 290 48.3
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 1.6e-67 260.8 292 49.0
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 1.6e-67 260.8 294 50.3
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 2.1e-67 260.4 288 47.9
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 2.1e-67 260.4 287 49.8
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 3.7e-67 259.6 290 48.6
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 3.7e-67 259.6 287 49.1
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 6.2e-67 258.8 292 47.3
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 6.2e-67 258.8 266 52.6
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 8.2e-67 258.5 292 47.6
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 1.4e-66 257.7 291 48.8
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.8e-66 257.3 288 47.6
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 1.8e-66 257.3 267 50.6
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 4.0e-66 256.1 270 49.3
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 5.3e-66 255.8 290 50.3
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 9.0e-66 255.0 291 47.8
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 1.2e-65 254.6 293 47.1
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 1.2e-65 254.6 293 47.1
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 1.2e-65 254.6 293 47.1
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 2.6e-65 253.4 293 48.5
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 2.6e-65 253.4 293 48.5
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 2.6e-65 253.4 289 46.4
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 3.4e-65 253.1 291 50.5
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 4.5e-65 252.7 283 48.1
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 4.5e-65 252.7 296 47.6
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.0e-64 251.5 292 48.6
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 1.3e-64 251.1 289 47.4
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 2.2e-64 250.4 289 47.4
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 2.2e-64 250.4 287 49.5
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.6e-62 244.2 293 47.1
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 1.6e-62 244.2 287 50.5
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 2.1e-62 243.8 290 49.7
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 7.9e-62 241.9 288 47.6
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.3e-61 241.1 286 49.7
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.3e-61 241.1 329 43.8
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 5.1e-61 239.2 290 47.9
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 8.7e-61 238.4 289 46.7
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 2.5e-60 236.9 285 45.3
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 2.5e-60 236.9 334 42.5
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 3.3e-60 236.5 387 38.2
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 7.4e-60 235.3 329 42.6
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 9.7e-60 235.0 229 52.0
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 8.2e-59 231.9 229 51.5
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 1.4e-58 231.1 229 49.8
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 9.4e-55 218.4 295 44.4
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 2.9e-48 196.8 247 41.3
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 5.5e-47 192.6 177 58.2
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 2.2e-43 180.6 172 52.3
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 2.4e-42 177.2 165 54.5
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 1.5e-41 174.5 299 36.5
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 8.5e-40 168.7 171 52.6
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.1e-39 168.3 166 54.8
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 3.3e-36 156.8 180 50.6
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 2.3e-29 134.0 187 44.9
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 4.0e-29 133.3 124 53.2
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.2e-28 131.7 124 52.4
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 3.1e-26 123.6 296 29.4
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 4.1e-26 123.2 120 53.3
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 8.5e-24 115.5 297 27.9
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.5e-23 114.0 89 62.9
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 5.2e-21 106.3 85 58.8
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 4.4e-20 103.2 292 28.1
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 4.4e-20 103.2 79 62.0
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 9.8e-20 102.1 106 51.9
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 1.7e-19 101.3 74 63.5
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 9.1e-18 95.5 74 59.5
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.0e-17 94.4 86 55.8
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.0e-17 94.4 86 55.8
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.8e-16 90.1 96 50.0
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 7.2e-15 85.9 106 45.3
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 6.8e-13 79.3 141 39.0
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 3.7e-11 73.6 92 42.4
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 4.9e-11 73.2 293 24.2
Medtr1g055145 Medicago truncatula HOM05D004300 ORTHO05D005171 8.3e-11 72.4 77 46.8
Zm00001eb408990 Zea mays HOM05D004300 ORTHO05D005171 7.3e-07 59.3 47 55.3


User provided reference genes

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