Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15869 Nelumbo nucifera HOM05D007392 ORTHO05D009181 9.5e-83 310.1 150 100.0
TAR623G1707 Trochodendron aralioides HOM05D007392 ORTHO05D009181 9.3e-46 187.2 135 69.6
GSVIVG01025476001 Vitis vinifera HOM05D007392 ORTHO05D009181 7.1e-38 161.0 133 58.6
Nn7g35849 Nelumbo nucifera HOM05D007392 ORTHO05D009181 2.3e-36 156.0 119 63.9
PSO384G3152 Papaver somniferum HOM05D007392 ORTHO05D009181 1.5e-35 153.3 141 58.9
Cfa009557 Carpinus fangiana HOM05D007392 ORTHO05D009181 8.1e-34 147.5 134 56.0
PSO339G3225 Papaver somniferum HOM05D007392 ORTHO05D009181 1.1e-33 147.1 142 57.0
Dinv13477 Davidia involucrata HOM05D007392 ORTHO05D009181 5.8e-32 141.4 140 55.0
Aqoxy2G00525 Aquilegia oxysepala HOM05D007392 ORTHO05D009181 7.6e-32 141.0 135 56.3
TWI34G1824 Tripterygium wilfordii HOM05D007392 ORTHO05D009181 1.1e-30 137.1 142 55.6
RcHm_v2.0_Chr5g0083851 Rosa chinensis HOM05D007392 ORTHO05D009181 6.0e-29 131.3 143 52.4
Potri.001G003300 Populus trichocarpa HOM05D007392 ORTHO05D009181 1.3e-28 130.2 142 54.2
CiPaw.13G177600 Carya illinoinensis HOM05D007392 ORTHO05D009181 8.7e-28 127.5 135 51.9
Potri.003G221800 Populus trichocarpa HOM05D007392 ORTHO05D009181 2.5e-27 125.9 140 52.1
Rhsim13G0233100 Rhododendron simsii HOM05D007392 ORTHO05D009181 3.7e-26 122.1 118 58.5
FvH4_3g45780 Fragaria vesca HOM05D007392 ORTHO05D009181 6.2e-26 121.3 141 48.9
Manes.15G109800 Manihot esculenta HOM05D007392 ORTHO05D009181 6.9e-25 117.9 154 44.8
Cc01_g00150 Coffea canephora HOM05D007392 ORTHO05D009181 2.0e-24 116.3 143 52.4
FAN11G3804 Fragaria x ananassa HOM05D007392 ORTHO05D009181 2.0e-24 116.3 141 48.9
MD03G1003200 Malus domestica HOM05D007392 ORTHO05D009181 2.0e-24 116.3 152 47.4
QL01p003594 Quercus lobata HOM05D007392 ORTHO05D009181 2.6e-24 115.9 161 41.0
FAN16G0802 Fragaria x ananassa HOM05D007392 ORTHO05D009181 5.8e-24 114.8 144 47.9
Prupe.6G002800 Prunus persica HOM05D007392 ORTHO05D009181 7.6e-24 114.4 119 52.9
Actinidia16241 Actinidia chinensis HOM05D007392 ORTHO05D009181 2.9e-23 112.5 130 54.6
ClCG03G014560 Citrullus lanatus HOM05D007392 ORTHO05D009181 1.4e-22 110.2 136 47.8
Lsat_1_v5_gn_6_55560 Lactuca sativa HOM05D007392 ORTHO05D009181 2.5e-22 109.4 144 47.2
Ciclev10017000m.g Citrus clementina HOM05D007392 ORTHO05D009181 4.2e-22 108.6 153 44.4
Oeu004754.1 Olea europaea HOM05D007392 ORTHO05D009181 9.3e-22 107.5 114 54.4
MELO3C015574.2 Cucumis melo HOM05D007392 ORTHO05D009181 2.7e-21 105.9 138 44.2
Eucgr.J01763 Eucalyptus grandis HOM05D007392 ORTHO05D009181 6.0e-21 104.8 118 48.3
MSTRG.20935 Avicennia marina HOM05D000287 ORTHO05D000319 1.0e-20 104.0 112 53.6
SGA_v2.0_scaffold6G03356 Striga asiatica HOM05D007392 ORTHO05D009181 1.0e-20 104.0 138 48.6
Sabra03G0165000 Salix brachista HOM05D007392 ORTHO05D009181 2.3e-20 102.8 120 51.7
CsaV3_1G041630 Cucumis sativus L. HOM05D007392 ORTHO05D009181 3.9e-20 102.1 138 43.5
THA.LOC104810320 Tarenaya hassleriana HOM05D007392 ORTHO05D009181 3.9e-20 102.1 151 41.7
CANSAT11G0973 Cannabis sativa HOM05D007392 ORTHO05D009181 8.7e-20 100.9 143 43.4
CAN.G1834.12 Capsicum annuum HOM05D007392 ORTHO05D009181 8.7e-20 100.9 140 45.7
Actinidia00905 Actinidia chinensis HOM05D007392 ORTHO05D009181 1.1e-19 100.5 145 47.6
Peaxi162Scf00705g00062 Petunia axillaris HOM05D007392 ORTHO05D009181 2.5e-19 99.4 136 48.5
FAN25G2102 Fragaria x ananassa HOM05D007392 ORTHO05D009181 5.7e-19 98.2 124 48.4
PGSC0003DMG402032165 Solanum tuberosum HOM05D007392 ORTHO05D009181 9.7e-19 97.4 139 46.8
Sopen01g001550 Solanum pennellii HOM05D007392 ORTHO05D009181 2.8e-18 95.9 141 47.5
PGR119G0135 Punica granatum HOM05D007392 ORTHO05D009181 3.7e-18 95.5 136 41.2
Solyc01g005530.3 Solanum lycopersicum HOM05D007392 ORTHO05D009181 1.1e-17 94.0 141 46.8
Nitab4.5_0006195g0060 Nicotiana tabacum HOM05D007392 ORTHO05D009181 1.4e-17 93.6 121 49.6
Sed0020032 Sechium edule HOM05D007392 ORTHO05D009181 3.1e-17 92.4 140 42.1
Nitab4.5_0000551g0100 Nicotiana tabacum HOM05D007392 ORTHO05D009181 4.1e-17 92.0 118 50.0
SalBow3G3897 Salvia bowleyana HOM05D007392 ORTHO05D009181 5.3e-17 91.7 141 42.6
vmacro04261 Vaccinium macrocarpon HOM05D007392 ORTHO05D009181 6.9e-17 91.3 103 54.4
Sabra01G0002400 Salix brachista HOM05D007392 ORTHO05D009181 9.0e-17 90.9 163 42.3
CARHR088140 Cardamine hirsuta HOM05D007392 ORTHO05D009181 2.2e-15 86.3 158 36.7
A05p36050 Brassica napus HOM05D007392 ORTHO05D009181 3.8e-15 85.5 164 37.8
ECA233G2404 Erigeron canadensis HOM05D007392 ORTHO05D009181 3.8e-15 85.5 145 40.7
BcaC05g29176 Brassica carinata HOM05D007392 ORTHO05D009181 6.5e-15 84.7 166 36.7
MD11G1003000 Malus domestica HOM05D007392 ORTHO05D009181 6.5e-15 84.7 147 39.5
HPP92_024836 Vanilla planifolia HOM05D007392 ORTHO05D009181 6.5e-15 84.7 137 46.7
HPP92_026624 Vanilla planifolia HOM05D007392 ORTHO05D009181 6.5e-15 84.7 137 44.5
Sc09g0000040 Simmondsia chinensis HOM05D007392 ORTHO05D009181 8.5e-15 84.3 163 37.4
DCAR_032194 Daucus carota HOM05D007392 ORTHO05D009181 5.5e-14 81.6 126 38.9
Migut.D02593 Erythranthe guttata HOM05D007392 ORTHO05D009181 7.2e-14 81.3 140 41.4
Migut.D02571 Erythranthe guttata HOM05D007392 ORTHO05D009181 9.3e-14 80.9 139 42.4
Thhalv10021633m.g Eutrema salsugineum HOM05D007392 ORTHO05D009181 9.3e-14 80.9 168 35.1
Carub.0003s1294 Capsella rubella HOM05D007392 ORTHO05D009181 1.6e-13 80.1 160 35.6
vmacro23199 Vaccinium macrocarpon HOM05D007392 ORTHO05D009181 2.1e-13 79.7 94 54.3
Cpa.g.sc119.37 Carica papaya HOM05D007392 ORTHO05D009181 2.7e-13 79.3 118 44.9
Oeu059652.1 Olea europaea HOM05D007392 ORTHO05D009181 3.6e-13 79.0 118 45.8
AT3G13480 Arabidopsis thaliana HOM05D007392 ORTHO05D009181 4.6e-13 78.6 163 35.6
A01p40100 Brassica napus HOM05D007392 ORTHO05D009181 7.9e-13 77.8 155 37.4
C01p51590 Brassica napus HOM05D007392 ORTHO05D009181 7.9e-13 77.8 154 38.3
BraA01t04052Z Brassica rapa HOM05D007392 ORTHO05D009181 7.9e-13 77.8 155 37.4
Sp3g11690 Schrenkiella parvula HOM05D007392 ORTHO05D009181 1.4e-12 77.0 168 32.1
BolC1t05102H Brassica oleracea HOM05D007392 ORTHO05D009181 2.3e-12 76.3 154 38.3
BraA03t12977Z Brassica rapa HOM05D007392 ORTHO05D009181 7.4e-11 71.2 166 33.1
AL3G25390 Arabidopsis lyrata HOM05D007392 ORTHO05D009181 9.7e-11 70.9 161 32.9
SGA_v2.0_scaffold6G03313 Striga asiatica HOM05D007392 ORTHO05D009181 9.7e-11 70.9 140 41.4
Zm00001eb213050 Zea mays HOM05D029728 ORTHO05D009181 1.7e-10 70.1 142 34.5
BcaB04g18766 Brassica carinata HOM05D007392 ORTHO05D009181 3.7e-10 68.9 154 33.1
TAR381G0583 Trochodendron aralioides HOM05D000488 ORTHO05D000347 6.3e-10 68.2 46 71.7
C05p54400 Brassica napus HOM05D007392 ORTHO05D009181 8.2e-10 67.8 145 34.5
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 3.1e-09 65.9 147 34.7
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 3.1e-09 65.9 147 36.1
Zm00001eb301030 Zea mays HOM05D029728 ORTHO05D009181 3.1e-09 65.9 142 38.7
Os03g0795100 Oryza sativa ssp. japonica HOM05D029728 ORTHO05D009181 4.1e-09 65.5 62 58.1
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 5.3e-09 65.1 147 32.7
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 6.9e-09 64.7 147 34.0
ATR1120G111 Amborella trichopoda HOM05D003947 ORTHO05D004614 6.9e-09 64.7 51 60.8
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 1.2e-08 63.9 147 36.1
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 1.2e-08 63.9 149 36.9
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 1.5e-08 63.5 142 33.8
EL10Ac4g10390 Beta vulgaris HOM05D007392 ORTHO05D009181 2.0e-08 63.2 130 33.1
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 2.0e-08 63.2 145 35.9
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 2.0e-08 63.2 151 35.8
Aa31LG8G680 Aethionema arabicum HOM05D007392 ORTHO05D009181 2.6e-08 62.8 147 32.7
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 2.6e-08 62.8 153 34.6
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 3.4e-08 62.4 151 34.4
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 4.5e-08 62.0 146 32.2
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 5.9e-08 61.6 147 34.7
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 5.9e-08 61.6 149 32.9
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 5.9e-08 61.6 153 34.0
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 7.7e-08 61.2 148 33.8
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 7.7e-08 61.2 147 35.4
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 7.7e-08 61.2 143 32.9
Zm00001eb060590 Zea mays HOM05D029728 ORTHO05D009181 7.7e-08 61.2 148 31.8
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.0e-07 60.8 151 35.8
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.0e-07 60.8 151 36.4
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 1.0e-07 60.8 151 36.4
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 1.0e-07 60.8 146 32.9
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 1.3e-07 60.5 148 32.4
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 1.7e-07 60.1 140 35.0
Migut.N00543 Erythranthe guttata HOM05D007392 ORTHO05D009181 1.7e-07 60.1 131 34.4
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 1.7e-07 60.1 148 33.1
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 1.7e-07 60.1 147 35.4
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 1.7e-07 60.1 139 36.7
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 2.2e-07 59.7 148 33.1
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 2.2e-07 59.7 148 32.4
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 2.9e-07 59.3 147 32.0
AL1G63490 Arabidopsis lyrata HOM05D007392 ORTHO05D009181 2.9e-07 59.3 60 46.7
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 2.9e-07 59.3 139 34.5
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 2.9e-07 59.3 146 35.6
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 2.9e-07 59.3 148 33.8
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 3.8e-07 58.9 165 30.3
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 3.8e-07 58.9 82 40.2
Lsat_1_v5_gn_9_42121 Lactuca sativa HOM05D003947 ORTHO05D004614 3.8e-07 58.9 158 34.8
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 3.8e-07 58.9 146 34.9
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 3.8e-07 58.9 148 32.4
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 5.0e-07 58.5 146 32.9
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 5.0e-07 58.5 148 33.8
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 5.0e-07 58.5 148 34.5
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 5.0e-07 58.5 147 34.7
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 6.5e-07 58.2 139 37.4
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 6.5e-07 58.2 148 33.1
THA.LOC104806764 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 8.5e-07 57.8 140 34.3
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 8.5e-07 57.8 147 35.4
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 1.1e-06 57.4 138 34.8
FAN13G1029 Fragaria x ananassa HOM05D007132 ORTHO05D009181 1.1e-06 57.4 52 57.7
FAN05G3304 Fragaria x ananassa HOM05D067380 ORTHO05D009181 1.4e-06 57.0 71 46.5
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 1.4e-06 57.0 131 35.1
Sc02g0003850 Simmondsia chinensis HOM05D003947 ORTHO05D004614 1.4e-06 57.0 144 35.4
HPP92_015638 Vanilla planifolia HOM05D007392 ORTHO05D009181 1.4e-06 57.0 133 38.3
Aa31LG10G780 Aethionema arabicum HOM05D007392 ORTHO05D009181 2.5e-06 56.2 70 42.9
AT1G22790 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 2.5e-06 56.2 145 31.7
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 2.5e-06 56.2 148 33.8
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 2.5e-06 56.2 161 31.1
AT1G55475 Arabidopsis thaliana HOM05D007392 ORTHO05D009181 3.2e-06 55.8 60 43.3
Carub.0001s4396 Capsella rubella HOM05D007392 ORTHO05D009181 3.2e-06 55.8 60 45.0
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 3.2e-06 55.8 146 32.9
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 4.2e-06 55.5 129 34.9
AL1G36340 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 4.2e-06 55.5 145 32.4
Dinv41043 Davidia involucrata HOM05D003947 ORTHO05D004614 4.2e-06 55.5 143 31.5
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 4.2e-06 55.5 148 33.8
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 4.2e-06 55.5 147 33.3
FAN05G0870 Fragaria x ananassa HOM05D067380 ORTHO05D009181 5.5e-06 55.1 71 45.1
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 5.5e-06 55.1 157 33.8
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 5.5e-06 55.1 144 34.7
BraA09t39684Z Brassica rapa HOM05D003947 ORTHO05D004614 7.2e-06 54.7 165 30.3
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 7.2e-06 54.7 146 32.9
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 7.2e-06 54.7 82 36.6
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 7.2e-06 54.7 141 34.0
PGR042G2534 Punica granatum HOM05D003947 ORTHO05D004614 7.2e-06 54.7 83 39.8
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 7.2e-06 54.7 149 34.9
Aa31LG4G8980 Aethionema arabicum HOM05D003947 ORTHO05D004614 9.4e-06 54.3 124 33.1
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 9.4e-06 54.3 147 34.0
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 9.4e-06 54.3 144 32.6
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 9.4e-06 54.3 146 31.5
Sed0022469 Sechium edule HOM05D003947 ORTHO05D004614 9.4e-06 54.3 46 54.3
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 9.4e-06 54.3 141 32.6


User provided reference genes

Program Settings