Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 1.3e-38 162.5 77 100.0
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 5.5e-26 120.6 71 80.3
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 3.3e-23 111.3 66 78.8
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 1.8e-21 105.5 67 70.1
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 3.4e-20 101.3 71 66.2
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 3.4e-20 101.3 71 64.8
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 2.9e-19 98.2 67 68.7
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 3.8e-19 97.8 65 67.7
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 5.0e-19 97.4 67 68.7
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 6.5e-19 97.1 66 66.7
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.1e-18 96.3 67 67.2
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.4e-18 95.9 69 65.2
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 3.2e-18 94.7 67 67.2
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 4.2e-18 94.4 66 68.2
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 5.5e-18 94.0 65 66.2
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 7.2e-18 93.6 70 64.3
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 7.2e-18 93.6 64 70.3
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 2.7e-17 91.7 70 61.4
Gohir.A12G175500 Gossypium hirsutum HOM05D004137 ORTHO05D004804 1.8e-16 89.0 71 60.6
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.8e-16 89.0 70 60.0
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 1.8e-16 89.0 70 60.0
Gohir.D12G178750 Gossypium hirsutum HOM05D004137 ORTHO05D004804 3.9e-16 87.8 63 65.1
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 8.7e-16 86.7 76 57.9
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 1.1e-15 86.3 60 70.0
Gorai.008G191500 Gossypium raimondii HOM05D004137 ORTHO05D004804 1.1e-15 86.3 63 65.1
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 1.5e-15 85.9 73 58.9
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 1.9e-15 85.5 69 56.5
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 1.9e-15 85.5 61 67.2
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.9e-15 85.5 72 59.7
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 1.9e-15 85.5 56 66.1
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 3.3e-15 84.7 71 59.2
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 3.3e-15 84.7 61 67.2
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 7.4e-15 83.6 61 65.6
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 7.4e-15 83.6 68 57.4
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 9.7e-15 83.2 61 65.6
Cc06_g23020 Coffea canephora HOM05D004137 ORTHO05D004804 1.3e-14 82.8 62 66.1
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 2.8e-14 81.6 68 58.8
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.7e-14 81.3 72 55.6
Potri.013G057766 Populus trichocarpa HOM05D004137 ORTHO05D004804 8.2e-14 80.1 65 60.0
Ciclev10023092m.g Citrus clementina HOM05D004137 ORTHO05D004804 1.4e-13 79.3 59 64.4
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 1.4e-13 79.3 60 61.7
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 1.8e-13 79.0 66 57.6
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 1.8e-13 79.0 66 57.6
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 1.8e-13 79.0 67 55.2
vmacro20990 Vaccinium macrocarpon HOM05D004137 ORTHO05D004804 2.4e-13 78.6 63 66.7
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 5.3e-13 77.4 70 54.3
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 6.9e-13 77.0 70 54.3
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 9.1e-13 76.6 65 60.0
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 1.5e-12 75.9 68 55.9
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 2.6e-12 75.1 70 54.3
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 4.5e-12 74.3 61 55.7
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 5.9e-12 73.9 69 50.7
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 7.7e-12 73.6 61 54.1
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 7.7e-12 73.6 68 52.9
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 2.2e-11 72.0 72 51.4
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 2.2e-11 72.0 61 54.1
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 5.0e-11 70.9 65 53.8
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 6.5e-11 70.5 69 50.7
Cpa.g.sc51.119 Carica papaya HOM05D004137 ORTHO05D004804 8.5e-11 70.1 61 57.4
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 8.5e-11 70.1 69 49.3
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 1.4e-10 69.3 68 48.5
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 1.9e-10 68.9 69 47.8
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 1.9e-10 68.9 62 59.7
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 1.9e-10 68.9 67 53.7
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 2.5e-10 68.6 68 51.5
PGSC0003DMG400023737 Solanum tuberosum HOM05D004137 ORTHO05D004804 3.2e-10 68.2 65 52.3
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 4.2e-10 67.8 61 52.5
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 5.5e-10 67.4 74 48.6
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 5.5e-10 67.4 69 50.7
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 7.2e-10 67.0 61 52.5
Lalb_Chr14g0364521 Lupinus albus HOM05D004137 ORTHO05D004804 1.2e-09 66.2 67 50.7
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 2.1e-09 65.5 69 47.8
Prupe.7G004500 Prunus persica HOM05D004137 ORTHO05D004804 2.7e-09 65.1 60 60.0
ClCG02G024390 Citrullus lanatus HOM05D004137 ORTHO05D004804 3.6e-09 64.7 60 60.0
Haze_19423 Corylus avellana HOM05D004137 ORTHO05D004804 3.6e-09 64.7 64 56.2
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 3.6e-09 64.7 66 45.5
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 6.1e-09 63.9 68 51.5
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 7.9e-09 63.5 69 46.4
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 7.9e-09 63.5 69 46.4
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 7.9e-09 63.5 69 46.4
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 7.9e-09 63.5 69 46.4
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 7.9e-09 63.5 69 46.4
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 1.0e-08 63.2 64 51.6
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 1.4e-08 62.8 69 44.9
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 2.3e-08 62.0 68 50.0
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 3.0e-08 61.6 69 44.9
MELO3C026884.2 Cucumis melo HOM05D004137 ORTHO05D004804 3.9e-08 61.2 60 51.7
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 3.9e-08 61.2 61 49.2
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 5.1e-08 60.8 68 45.6
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 5.1e-08 60.8 69 43.5
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 6.7e-08 60.5 73 43.8
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 8.8e-08 60.1 68 50.0
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 8.8e-08 60.1 69 43.5
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 8.8e-08 60.1 69 43.5
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 8.8e-08 60.1 69 43.5
Cfa016445 Carpinus fangiana HOM05D001721 ORTHO05D001804 8.8e-08 60.1 60 56.7
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 8.8e-08 60.1 66 47.0
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.1e-07 59.7 68 45.6
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 1.1e-07 59.7 73 43.8
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 1.5e-07 59.3 73 43.8
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 2.0e-07 58.9 68 44.1
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 2.6e-07 58.5 68 48.5
HPP92_015924 Vanilla planifolia HOM05D004137 ORTHO05D004804 2.6e-07 58.5 65 47.7
ClCG10G013400 Citrullus lanatus HOM05D004137 ORTHO05D004804 3.3e-07 58.2 60 50.0
FvH4_4g27600 Fragaria vesca HOM05D004137 ORTHO05D004804 3.3e-07 58.2 51 60.8
Sed0004008 Sechium edule HOM05D004137 ORTHO05D004804 3.3e-07 58.2 60 46.7
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 4.4e-07 57.8 68 42.6
CiPaw.09G002200 Carya illinoinensis HOM05D004137 ORTHO05D004804 5.7e-07 57.4 53 54.7
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 7.4e-07 57.0 69 42.0
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 7.4e-07 57.0 69 42.0
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 1.3e-06 56.2 68 48.5
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 1.3e-06 56.2 68 48.5
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 1.3e-06 56.2 69 44.9
C03p15600 Brassica napus HOM05D004137 ORTHO05D004804 1.7e-06 55.8 63 44.4
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.7e-06 55.8 68 47.1
BcaC05g29894 Brassica carinata HOM05D004137 ORTHO05D004804 2.2e-06 55.5 59 49.2
BolC5t34968H Brassica oleracea HOM05D004137 ORTHO05D004804 2.2e-06 55.5 59 49.2
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 2.2e-06 55.5 69 42.0
BcaC05g30244 Brassica carinata HOM05D004137 ORTHO05D004804 2.8e-06 55.1 59 49.2
BcaC05g30291 Brassica carinata HOM05D004137 ORTHO05D004804 2.8e-06 55.1 59 49.2
A05p43490 Brassica napus HOM05D004137 ORTHO05D004804 2.8e-06 55.1 59 49.2
BraA05t23089Z Brassica rapa HOM05D004137 ORTHO05D004804 2.8e-06 55.1 59 49.2
Carub.0003s0313 Capsella rubella HOM05D004137 ORTHO05D004804 2.8e-06 55.1 59 50.8
Phvul.002G247400 Phaseolus vulgaris HOM05D004137 ORTHO05D004804 2.8e-06 55.1 60 55.0
Medtr7g085660 Medicago truncatula HOM05D004137 ORTHO05D004804 4.8e-06 54.3 61 49.2
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 6.3e-06 53.9 65 43.1
A01p17580 Brassica napus HOM05D004137 ORTHO05D004804 6.3e-06 53.9 68 44.1
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 6.3e-06 53.9 65 43.1
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 8.2e-06 53.5 64 43.8
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 8.2e-06 53.5 64 43.8
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 8.2e-06 53.5 65 41.5


User provided reference genes

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