Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 2.5e-90 335.5 178 100.0
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 6.2e-73 277.7 175 82.3
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 1.2e-39 167.2 179 54.2
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 2.0e-39 166.4 176 57.4
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 2.2e-38 162.9 177 57.1
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 2.9e-38 162.5 175 53.7
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 3.8e-38 162.2 172 52.3
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 4.9e-38 161.8 170 55.3
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 8.4e-38 161.0 158 56.3
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 1.9e-37 159.8 137 59.9
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 2.5e-37 159.5 153 60.1
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 2.5e-37 159.5 155 56.8
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 3.2e-37 159.1 164 54.9
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 4.2e-37 158.7 169 55.0
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 5.5e-37 158.3 141 59.6
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 5.5e-37 158.3 141 60.3
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 7.1e-37 157.9 160 56.9
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 1.6e-36 156.8 179 56.4
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 3.5e-36 155.6 173 54.9
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 7.9e-36 154.5 160 56.2
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 1.0e-35 154.1 163 55.8
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 1.3e-35 153.7 146 58.2
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 1.3e-35 153.7 146 58.2
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 1.3e-35 153.7 179 55.9
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 3.0e-35 152.5 179 54.7
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 8.7e-35 151.0 171 53.2
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 1.5e-34 150.2 159 56.6
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 2.5e-34 149.4 181 53.0
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 2.5e-34 149.4 159 56.0
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 4.3e-34 148.7 151 57.6
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 7.4e-34 147.9 158 55.1
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 9.7e-34 147.5 181 54.1
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 1.3e-33 147.1 187 50.3
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 1.6e-33 146.7 197 49.2
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 1.6e-33 146.7 179 52.5
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 2.8e-33 146.0 165 53.3
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 2.8e-33 146.0 167 52.7
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 3.7e-33 145.6 144 57.6
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 4.8e-33 145.2 152 53.9
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 4.8e-33 145.2 167 51.5
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 6.3e-33 144.8 142 53.5
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 8.2e-33 144.4 140 56.4
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 1.1e-32 144.1 158 53.2
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 1.8e-32 143.3 160 52.5
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 5.3e-32 141.7 181 50.8
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 6.9e-32 141.4 141 51.8
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 1.5e-31 140.2 136 55.1
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 1.5e-31 140.2 121 60.3
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 2.0e-31 139.8 143 53.8
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 2.6e-31 139.4 140 53.6
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 4.5e-31 138.7 149 56.4
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 1.0e-30 137.5 137 54.7
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 1.3e-30 137.1 181 51.9
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 1.7e-30 136.7 179 50.8
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 2.9e-30 136.0 146 52.7
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 3.8e-30 135.6 113 64.6
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 3.8e-30 135.6 170 50.0
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 6.5e-30 134.8 142 54.9
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 6.5e-30 134.8 155 51.0
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 1.1e-29 134.0 156 53.8
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 1.1e-29 134.0 156 53.8
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 1.1e-29 134.0 161 52.2
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 1.4e-29 133.7 150 54.0
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 1.9e-29 133.3 207 47.8
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 1.9e-29 133.3 178 50.6
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 1.9e-29 133.3 181 50.8
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 1.9e-29 133.3 179 50.8
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.5e-29 132.9 173 49.7
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 2.5e-29 132.9 177 49.2
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 2.5e-29 132.9 162 48.8
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 3.2e-29 132.5 175 50.3
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 3.2e-29 132.5 128 57.0
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 3.2e-29 132.5 159 50.3
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 3.2e-29 132.5 140 50.0
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 5.5e-29 131.7 176 48.9
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 9.3e-29 131.0 176 49.4
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 1.2e-28 130.6 128 56.2
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 1.2e-28 130.6 128 56.2
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 2.1e-28 129.8 176 46.0
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 3.6e-28 129.0 151 51.0
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 3.6e-28 129.0 148 52.7
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 4.6e-28 128.6 167 49.1
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 6.1e-28 128.3 133 55.6
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 6.1e-28 128.3 153 50.3
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 7.9e-28 127.9 172 47.7
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 7.9e-28 127.9 171 47.4
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 7.9e-28 127.9 178 48.9
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 1.0e-27 127.5 174 47.7
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 1.0e-27 127.5 168 47.6
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 1.0e-27 127.5 131 56.5
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 1.3e-27 127.1 158 48.7
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 3.0e-27 125.9 170 48.2
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 3.0e-27 125.9 139 55.4
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 3.9e-27 125.6 139 53.2
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 3.9e-27 125.6 174 46.6
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 3.9e-27 125.6 156 52.6
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 3.9e-27 125.6 156 52.6
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 3.9e-27 125.6 156 52.6
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 3.9e-27 125.6 156 52.6
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 3.9e-27 125.6 156 52.6
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 5.1e-27 125.2 123 56.1
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 6.7e-27 124.8 156 52.6
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 6.7e-27 124.8 152 48.7
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 8.8e-27 124.4 166 48.2
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 1.5e-26 123.6 145 53.1
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 1.5e-26 123.6 132 54.5
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 1.9e-26 123.2 147 52.4
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 2.5e-26 122.9 152 48.0
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 2.5e-26 122.9 160 50.6
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 4.3e-26 122.1 167 48.5
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 4.3e-26 122.1 142 50.7
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 7.4e-26 121.3 143 52.4
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 9.7e-26 120.9 147 48.3
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 1.7e-25 120.2 148 48.6
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 4.8e-25 118.6 165 46.7
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 3.1e-24 115.9 102 60.8
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 1.2e-23 114.0 187 45.5
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 1.5e-23 113.6 148 47.3
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 3.4e-23 112.5 144 52.1
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 5.9e-23 111.7 132 50.8
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 6.5e-22 108.2 172 42.4
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 2.5e-21 106.3 163 46.0
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 1.2e-20 104.0 157 43.9
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 1.2e-20 104.0 100 58.0
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 2.7e-20 102.8 138 47.8
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 1.1e-18 97.4 188 41.5
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 7.4e-18 94.7 160 44.4
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 1.7e-17 93.6 134 49.3
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 2.2e-17 93.2 169 40.2
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 2.6e-15 86.3 157 40.8
Mapoly0036s0026 Marchantia polymorpha HOM05D004872 ORTHO05D006050 3.8e-14 82.4 152 36.8
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 3.6e-12 75.9 112 45.5
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 2.3e-11 73.2 87 48.3
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 2.3e-11 73.2 118 44.9
SEGI_13451 Sequoiadendron giganteum HOM05D004872 ORTHO05D006050 9.7e-10 67.8 139 33.1
AagrBONN_evm.TU.Sc2ySwM_362.236 Anthoceros agrestis HOM05D004872 ORTHO05D006050 1.3e-09 67.4 167 35.9
Aqoxy7G03168 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 8.2e-09 64.7 131 38.2
Pp3c23_7100 Physcomitrium patens HOM05D004872 ORTHO05D006050 5.3e-08 62.0 151 32.5
CDE05G2556 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 8.5e-06 54.7 82 46.3


User provided reference genes

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