Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.1e-248 862.8 444 100.0
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 3.5e-202 708.4 452 79.0
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.1e-200 703.4 452 79.4
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.0e-196 690.3 452 76.5
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 4.2e-195 684.9 450 77.8
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 5.0e-188 661.4 450 74.0
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 8.5e-188 660.6 452 73.9
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 3.3e-184 648.7 452 72.6
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 3.3e-184 648.7 457 72.2
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 4.3e-184 648.3 452 73.9
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 4.3e-184 648.3 452 72.6
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 9.7e-184 647.1 452 73.7
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.3e-183 646.7 418 80.1
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 1.4e-179 633.3 466 70.0
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.9e-179 632.9 453 70.9
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 2.3e-177 625.9 453 70.0
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 2.3e-177 625.9 453 70.0
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 6.7e-177 624.4 448 70.3
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 1.5e-176 623.2 450 70.2
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 3.3e-176 622.1 448 69.9
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 4.4e-176 621.7 450 70.7
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 5.7e-176 621.3 449 70.2
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 1.3e-175 620.2 449 68.8
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 1.7e-175 619.8 450 69.3
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.7e-175 619.8 448 69.4
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 2.8e-175 619.0 451 68.1
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.1e-174 617.1 451 68.1
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 1.4e-174 616.7 451 69.2
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 2.4e-174 615.9 451 69.2
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 3.1e-174 615.5 450 68.7
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 4.1e-174 615.1 452 67.9
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 7.0e-174 614.4 440 69.1
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 2.0e-173 612.8 420 74.0
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 4.5e-173 611.7 449 68.4
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 4.5e-173 611.7 448 68.8
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 4.5e-173 611.7 446 70.0
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 1.0e-172 610.5 450 66.7
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 2.2e-172 609.4 447 68.5
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 6.5e-172 607.8 464 66.2
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 8.5e-172 607.4 442 68.6
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 2.5e-171 605.9 454 69.8
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 4.2e-171 605.1 446 70.0
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 1.6e-170 603.2 445 68.3
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 2.1e-170 602.8 445 68.8
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 2.7e-170 602.4 450 68.0
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 3.6e-170 602.1 445 68.1
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 3.6e-170 602.1 445 68.1
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 3.6e-170 602.1 396 76.5
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 6.1e-170 601.3 450 68.2
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 1.4e-169 600.1 456 67.1
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 1.8e-169 599.7 449 68.4
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 5.2e-169 598.2 454 68.1
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 5.2e-169 598.2 449 69.3
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 6.7e-169 597.8 473 65.1
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.1e-168 597.0 449 68.8
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.6e-168 595.9 448 67.4
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 5.7e-168 594.7 450 65.8
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 1.7e-167 593.2 452 65.9
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 2.2e-167 592.8 550 58.5
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 2.8e-167 592.4 447 66.9
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 4.8e-167 591.7 443 68.6
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 4.8e-167 591.7 446 67.9
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 1.8e-166 589.7 493 62.3
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 4.1e-166 588.6 473 65.5
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 4.1e-166 588.6 449 66.4
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 1.2e-165 587.0 473 65.5
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 2.0e-165 586.3 480 63.8
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 2.0e-165 586.3 443 67.7
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.0e-164 583.9 451 65.6
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 1.3e-164 583.6 450 65.6
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 1.3e-164 583.6 446 67.3
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 1.7e-164 583.2 450 65.8
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 2.9e-164 582.4 449 65.5
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 3.8e-164 582.0 449 65.3
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 5.0e-164 581.6 450 65.3
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 5.0e-164 581.6 450 65.3
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 6.5e-164 581.3 450 65.3
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 6.5e-164 581.3 444 66.0
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 8.5e-164 580.9 445 66.3
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 1.1e-163 580.5 447 66.9
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 1.1e-163 580.5 449 65.0
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.5e-163 580.1 447 65.8
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.5e-163 580.1 446 67.0
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 1.5e-163 580.1 444 66.4
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.9e-163 579.7 444 67.1
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 1.9e-163 579.7 390 72.8
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 2.5e-163 579.3 445 67.0
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 3.2e-163 578.9 445 67.4
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 4.2e-163 578.6 445 66.5
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 9.4e-163 577.4 450 65.3
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 2.1e-162 576.2 445 66.7
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 6.1e-162 574.7 445 66.5
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 1.8e-161 573.2 466 63.3
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 1.8e-161 573.2 478 63.8
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 2.3e-161 572.8 446 66.1
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 6.7e-161 571.2 446 64.8
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 6.7e-161 571.2 446 64.8
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 2.6e-160 569.3 445 65.8
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 3.3e-160 568.9 446 65.0
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 3.3e-160 568.9 450 64.2
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 3.3e-160 568.9 414 68.1
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.3e-159 567.0 444 65.5
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 7.7e-157 557.8 473 61.3
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.7e-156 556.6 469 62.0
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 3.2e-155 552.4 462 61.5
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 1.2e-154 550.4 399 68.2
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.2e-154 550.4 445 63.6
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 3.0e-153 545.8 428 63.3
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 6.8e-153 544.7 467 61.7
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 3.7e-151 538.9 443 62.5
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 1.4e-150 537.0 405 66.9
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.2e-146 523.9 412 64.3
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 4.9e-143 511.9 442 59.5
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 4.1e-142 508.8 442 58.4
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.6e-141 506.9 383 66.3
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 2.9e-140 502.7 442 57.2
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 4.9e-135 485.3 447 56.8
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 9.2e-134 481.1 448 55.4
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 1.5e-128 463.8 443 53.7
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.6e-128 463.0 350 68.0
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 5.4e-126 455.3 443 52.1
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 2.7e-125 453.0 385 59.5
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.4e-121 440.7 443 50.3
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 1.8e-121 440.3 443 50.3
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 1.5e-120 437.2 454 54.8
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 3.7e-119 432.6 279 75.6
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 6.4e-119 431.8 449 49.4
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.7e-117 426.4 433 55.0
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 1.3e-106 391.0 317 64.0
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 5.3e-105 385.6 442 48.0
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 3.5e-101 372.9 386 52.6
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 3.1e-97 359.8 251 70.1
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.9e-92 342.8 265 67.5
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 5.8e-88 328.9 291 60.1
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 5.1e-84 315.8 442 40.7
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 2.6e-72 276.9 187 71.7
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 5.5e-70 269.2 310 50.6
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 9.7e-67 258.5 447 37.1
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.4e-57 228.0 158 72.2
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.4e-52 211.5 129 76.0
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 2.6e-51 207.2 194 57.7
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 8.2e-50 202.2 145 67.6
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 5.0e-47 193.0 173 59.5
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 1.7e-42 177.9 122 71.3
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.1e-41 175.3 121 72.7
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 5.0e-31 139.8 135 57.8
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 5.0e-31 139.8 99 67.7
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 5.2e-28 129.8 118 57.6
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 4.4e-27 126.7 118 61.9
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 9.2e-25 119.0 99 55.6
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 1.2e-24 118.6 72 75.0
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 5.4e-17 93.2 72 62.5
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 7.3e-14 82.8 58 70.7
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 1.2e-13 82.0 63 66.7
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 3.1e-12 77.4 44 75.0
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 4.9e-10 70.1 46 67.4
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 7.1e-09 66.2 51 62.7
FvH4_5g06577 Fragaria vesca HOM05D000025 ORTHO05D000040 8.6e-07 59.3 37 75.7
Nitab4.5_0000468g0200 Nicotiana tabacum HOM05D004544 ORTHO05D283929 3.3e-06 57.4 181 28.2


User provided reference genes

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