Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15783 Nelumbo nucifera HOM05D007176 ORTHO05D009050 3.8e-162 575.1 360 100.0
Cfa020128 Carpinus fangiana HOM05D007176 ORTHO05D009050 6.1e-120 434.9 349 64.8
TAR633G1141 Trochodendron aralioides HOM05D007176 ORTHO05D009050 1.5e-118 430.3 357 81.0
TAR633G0683 Trochodendron aralioides HOM05D007176 ORTHO05D009050 1.7e-117 426.8 357 80.4
Manes.09G039600 Manihot esculenta HOM05D007176 ORTHO05D009050 8.3e-117 424.5 349 80.2
Dinv16365 Davidia involucrata HOM05D007176 ORTHO05D009050 2.1e-112 409.8 353 68.0
Thecc.05G178200 Theobroma cacao HOM05D007176 ORTHO05D009050 2.8e-112 409.5 349 65.9
RcHm_v2.0_Chr3g0478871 Rosa chinensis HOM05D007176 ORTHO05D009050 6.8e-111 404.8 351 70.1
Duzib106G0399 Durio zibethinus HOM05D007176 ORTHO05D009050 4.4e-110 402.1 349 66.8
FvH4_6g21620 Fragaria vesca HOM05D007176 ORTHO05D009050 1.3e-109 400.6 351 77.2
FAN02G0922 Fragaria x ananassa HOM05D007176 ORTHO05D009050 1.3e-109 400.6 351 77.2
Gohir.A04G053500 Gossypium hirsutum HOM05D007176 ORTHO05D009050 1.3e-109 400.6 352 69.9
FAN14G2546 Fragaria x ananassa HOM05D007176 ORTHO05D009050 3.7e-109 399.1 351 77.2
FAN09G2372 Fragaria x ananassa HOM05D007176 ORTHO05D009050 1.4e-108 397.1 351 76.1
QL07p025011 Quercus lobata HOM05D007176 ORTHO05D009050 1.8e-108 396.7 348 76.4
Hma1.2p1_0645F.1_g194890 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 4.1e-108 395.6 360 74.7
FAN05G5781 Fragaria x ananassa HOM05D007176 ORTHO05D009050 1.1e-105 387.5 357 75.9
Lju124C23T17 Lonicera japonica HOM05D007176 ORTHO05D009050 4.3e-105 385.6 332 78.9
MBI01_g44281_MAGBIO Magnolia biondii HOM05D007176 ORTHO05D009050 5.6e-105 385.2 329 64.1
CiPaw.09G027300 Carya illinoinensis HOM05D007176 ORTHO05D009050 7.3e-105 384.8 349 75.4
Migut.K00028 Erythranthe guttata HOM05D007176 ORTHO05D009050 4.0e-103 379.0 351 75.2
EL10Ac3g06857 Beta vulgaris HOM05D007176 ORTHO05D009050 5.2e-103 378.6 351 74.4
Eucgr.K01865 Eucalyptus grandis HOM05D007176 ORTHO05D009050 5.2e-103 378.6 350 73.7
Aa31LG10G13110 Aethionema arabicum HOM05D007176 ORTHO05D009050 1.2e-102 377.5 357 66.9
BcaC07g40246 Brassica carinata HOM05D007176 ORTHO05D009050 1.5e-102 377.1 348 69.0
Cpa.g.sc85.35 Carica papaya HOM05D007176 ORTHO05D009050 3.4e-102 375.9 348 75.3
Potri.006G195800 Populus trichocarpa HOM05D007176 ORTHO05D009050 8.3e-101 371.3 353 73.1
Prupe.7G084400 Prunus persica HOM05D007176 ORTHO05D009050 4.1e-100 369.0 348 74.4
A09p51090 Brassica napus HOM05D007176 ORTHO05D009050 2.0e-99 366.7 372 64.2
arahy.Tifrunner.gnm1.ann1.5B5G66 Arachis hypogaea HOM05D007176 ORTHO05D009050 7.8e-99 364.8 360 71.7
Lj5g0009846 Lotus japonicus HOM05D007176 ORTHO05D009050 2.5e-97 359.8 359 69.9
Sabra06G0150500 Salix brachista HOM05D007176 ORTHO05D009050 7.3e-97 358.2 341 73.6
ECA247G1245 Erigeron canadensis HOM05D007176 ORTHO05D009050 9.5e-97 357.8 348 71.6
GSVIVG01033441001 Vitis vinifera HOM05D007176 ORTHO05D009050 4.7e-96 355.5 331 69.5
THA.LOC104802720 Tarenaya hassleriana HOM05D007176 ORTHO05D009050 4.0e-95 352.4 354 61.6
arahy.Tifrunner.gnm1.ann1.I5CDLA Arachis hypogaea HOM05D007176 ORTHO05D009050 5.2e-95 352.1 378 68.5
C08p33910 Brassica napus HOM05D007176 ORTHO05D009050 2.6e-94 349.7 348 65.5
CDE04G3485 Ceratophyllum demersum HOM05D007176 ORTHO05D009050 2.6e-94 349.7 350 70.9
HanXRQChr10g0300591 Helianthus annuus HOM05D007176 ORTHO05D009050 4.4e-94 349.0 350 71.4
Haze_20048 Corylus avellana HOM05D007176 ORTHO05D009050 7.5e-94 348.2 381 52.5
Haze_20055 Corylus avellana HOM05D007176 ORTHO05D009050 7.5e-94 348.2 381 52.5
CANSAT64G0938 Cannabis sativa HOM05D007176 ORTHO05D009050 2.9e-93 346.3 349 69.6
MD12G1053200 Malus domestica HOM05D007176 ORTHO05D009050 1.1e-92 344.4 353 68.8
CSS0044198 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 1.9e-92 343.6 347 72.3
TPR.G19346 Trifolium pratense HOM05D007176 ORTHO05D009050 2.1e-91 340.1 378 66.7
PGR142G3952 Punica granatum HOM05D007176 ORTHO05D009050 2.7e-91 339.7 356 69.7
Sc13g0002490 Simmondsia chinensis HOM05D007176 ORTHO05D009050 1.3e-90 337.4 357 60.5
Rhsim04G0094400 Rhododendron simsii HOM05D007176 ORTHO05D009050 3.9e-90 335.9 353 69.4
Actinidia17284 Actinidia chinensis HOM05D007176 ORTHO05D009050 3.3e-89 332.8 350 68.6
vmacro22113 Vaccinium macrocarpon HOM05D007176 ORTHO05D009050 5.6e-89 332.0 376 50.5
MD14G1051600 Malus domestica HOM05D007176 ORTHO05D009050 1.6e-88 330.5 353 59.2
Thhalv10006065m.g Eutrema salsugineum HOM05D007176 ORTHO05D009050 1.8e-87 327.0 353 68.8
Os02g0281150 Oryza sativa ssp. japonica HOM05D007176 ORTHO05D009050 1.2e-86 324.3 341 66.3
AL5G40300 Arabidopsis lyrata HOM05D007176 ORTHO05D009050 1.5e-86 323.9 353 68.0
CARHR168930 Cardamine hirsuta HOM05D007176 ORTHO05D009050 2.6e-86 323.2 353 60.6
Carub.0005s2528 Capsella rubella HOM05D007176 ORTHO05D009050 2.4e-84 316.6 353 67.4
SalBow1G6257 Salvia bowleyana HOM05D007176 ORTHO05D009050 5.4e-84 315.5 360 66.1
Sp5g04340 Schrenkiella parvula HOM05D007176 ORTHO05D009050 4.6e-83 312.4 353 57.5
Sopen06g001340 Solanum pennellii HOM05D007176 ORTHO05D009050 7.3e-81 305.1 341 60.4
AT3G58530 Arabidopsis thaliana HOM05D007176 ORTHO05D009050 1.2e-80 304.3 353 64.9
AUR62032747 Chenopodium quinoa HOM05D007176 ORTHO05D009050 1.6e-80 303.9 333 68.5
Gohir.D04G094700 Gossypium hirsutum HOM05D007176 ORTHO05D009050 2.1e-80 303.5 277 67.9
CSS0035640 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 3.6e-80 302.8 347 68.0
Medtr1g054625 Medicago truncatula HOM05D007176 ORTHO05D009050 1.1e-79 301.2 351 64.7
PGSC0003DMG400029168 Solanum tuberosum HOM05D007176 ORTHO05D009050 1.4e-79 300.8 341 67.4
CAN.G111.5 Capsicum annuum HOM05D007176 ORTHO05D009050 1.8e-79 300.4 349 66.5
Gorai.009G392400 Gossypium raimondii HOM05D007176 ORTHO05D009050 4.0e-79 299.3 330 61.5
Peaxi162Scf00258g00925 Petunia axillaris HOM05D007176 ORTHO05D009050 5.8e-78 295.4 346 64.5
Solyc06g005380.3 Solanum lycopersicum HOM05D007176 ORTHO05D009050 9.9e-78 294.7 341 66.6
Cc06_g15630 Coffea canephora HOM05D007176 ORTHO05D009050 3.8e-77 292.7 352 65.3
COL.COLO4_29390 Corchorus olitorius HOM05D007176 ORTHO05D009050 4.9e-77 292.4 335 57.9
Glyma.09G105500 Glycine max HOM05D007176 ORTHO05D009050 3.2e-76 289.7 356 63.5
DCAR_019856 Daucus carota HOM05D007176 ORTHO05D009050 9.3e-76 288.1 338 49.7
Hma1.2p1_0645F.1_g194900 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 9.3e-76 288.1 291 73.9
Ah.13g075580 Amaranthus hybridus HOM05D007176 ORTHO05D009050 1.2e-75 287.7 289 73.7
Ca_03573_v3 Cicer arietinum L. HOM05D007176 ORTHO05D009050 2.7e-75 286.6 359 61.8
BolC8t50987H Brassica oleracea HOM05D000032 ORTHO05D001620 3.5e-75 286.2 277 68.6
PSO541G4948 Papaver somniferum HOM05D007176 ORTHO05D009050 1.0e-74 284.6 290 74.5
Lalb_Chr02g0153821 Lupinus albus HOM05D007176 ORTHO05D009050 3.0e-74 283.1 355 62.0
Nitab4.5_0008255g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 3.0e-74 283.1 347 47.0
Atru.BG.213.p Acer truncatum HOM05D007176 ORTHO05D009050 1.1e-73 281.2 342 65.2
Lsat_1_v5_gn_9_26900 Lactuca sativa HOM05D007176 ORTHO05D009050 7.3e-73 278.5 352 53.1
Aqoxy279s002 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 3.6e-72 276.2 348 65.2
Aqoxy2G00051 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 3.6e-72 276.2 348 65.2
Zm00001eb237210 Zea mays HOM05D007176 ORTHO05D009050 1.2e-67 261.2 341 61.9
HPP92_010126 Vanilla planifolia HOM05D007176 ORTHO05D009050 2.3e-66 256.9 290 70.7
PSO675G7508 Papaver somniferum HOM05D007176 ORTHO05D009050 1.1e-65 254.6 290 63.8
BraA09t40553Z Brassica rapa HOM05D000032 ORTHO05D001620 1.5e-62 244.2 278 61.5
VMungo0720G0788 Vigna mungo HOM05D007176 ORTHO05D009050 2.0e-62 243.8 405 39.0
BcaC02g10014 Brassica carinata HOM05D007176 ORTHO05D009050 5.8e-62 242.3 296 66.9
SEGI_09769 Sequoiadendron giganteum HOM05D007176 ORTHO05D009050 1.4e-60 237.7 290 68.6
SMO118G0524 Selaginella moellendorffii HOM05D007176 ORTHO05D009050 1.2e-59 234.6 339 58.1
Nitab4.5_0000009g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 6.2e-56 222.2 417 36.7
C04p33960 Brassica napus HOM05D007176 ORTHO05D009050 1.8e-55 220.7 277 67.5
BolC4t24963H Brassica oleracea HOM05D000032 ORTHO05D001620 1.8e-55 220.7 277 67.5
Pp3c23_2930 Physcomitrium patens HOM05D007176 ORTHO05D009050 3.2e-52 209.9 357 51.8
Psat6g088000 Pisum sativum HOM05D007176 ORTHO05D009050 3.9e-50 203.0 298 61.1
Hund24823 Selenicereus undatus HOM05D007176 ORTHO05D009050 3.9e-50 203.0 134 72.4
unitig_736.g22301 Utricularia gibba HOM05D007176 ORTHO05D009050 4.8e-48 196.1 410 50.2
Ciclev10012430m.g Citrus clementina HOM05D007176 ORTHO05D009050 6.9e-47 192.2 152 62.5
SGA_v2.0_scaffold274G46490 Striga asiatica HOM05D007176 ORTHO05D009050 1.3e-45 188.0 136 66.2
AagrBONN_evm.TU.Sc2ySwM_228.1251 Anthoceros agrestis HOM05D007176 ORTHO05D009050 1.1e-44 184.9 347 51.6
Atru.chr8.1185 Acer truncatum HOM05D007176 ORTHO05D009050 1.9e-41 174.1 260 62.7
Phvul.007G261900 Phaseolus vulgaris HOM05D007176 ORTHO05D009050 1.4e-39 167.9 301 56.8
A04p02540 Brassica napus HOM05D000032 ORTHO05D001620 3.8e-37 159.8 293 42.3
Hund24819 Selenicereus undatus HOM05D007176 ORTHO05D001610 6.5e-37 159.1 140 60.7
arahy.Tifrunner.gnm1.ann1.0S64XP Arachis hypogaea HOM05D007176 ORTHO05D009050 4.2e-36 156.4 287 36.6
HanXRQChr05g0140621 Helianthus annuus HOM05D007176 ORTHO05D009050 3.6e-35 153.3 148 57.4
HanXRQChr10g0316231 Helianthus annuus HOM05D007176 ORTHO05D009050 3.6e-35 153.3 148 57.4
ATR0001G043 Amborella trichopoda HOM05D007176 ORTHO05D009050 4.5e-30 136.3 86 75.6
AUR62015309 Chenopodium quinoa HOM05D007176 ORTHO05D009050 4.5e-30 136.3 122 58.2
Mapoly0209s0007 Marchantia polymorpha HOM05D007176 ORTHO05D009050 3.0e-26 123.6 131 48.9
PRCOL_00005880 Prasinoderma coloniale HOM05D007176 ORTHO05D009050 4.8e-24 116.3 301 30.9
MBI01_g24087_MAGBIO Magnolia biondii HOM05D007176 ORTHO05D009050 2.6e-09 67.4 41 78.0
TWI39G1273 Tripterygium wilfordii HOM05D002887 ORTHO05D003159 1.4e-07 61.6 124 34.7
THA.LOC104810311 Tarenaya hassleriana HOM05D002887 ORTHO05D003159 1.8e-07 61.2 124 33.1
Sabra11G0137200 Salix brachista HOM05D002887 ORTHO05D003159 2.4e-07 60.8 120 34.2
Potri.011G169800 Populus trichocarpa HOM05D002887 ORTHO05D003159 5.4e-07 59.7 122 34.4
Haze_09925 Corylus avellana HOM05D002887 ORTHO05D003159 7.0e-07 59.3 124 32.3
HanXRQChr10g0281201 Helianthus annuus HOM05D005998 ORTHO05D007664 7.0e-07 59.3 96 40.6
Nn4g26135 Nelumbo nucifera HOM05D002762 ORTHO05D004643 9.1e-07 58.9 138 34.1
HPP92_018919 Vanilla planifolia HOM05D002887 ORTHO05D003159 2.0e-06 57.8 118 34.7
EL10Ac7g15876 Beta vulgaris HOM05D002125 ORTHO05D002105 4.5e-06 56.6 126 34.1
Cfa016970 Carpinus fangiana HOM05D002887 ORTHO05D003159 7.7e-06 55.8 124 31.5


User provided reference genes

Program Settings