Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 9.6e-170 600.1 314 100.0
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 2.7e-124 449.1 340 71.2
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 6.1e-124 448.0 347 70.3
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 1.4e-123 446.8 347 70.9
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 4.0e-123 445.3 349 70.5
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 5.2e-123 444.9 340 70.9
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 5.2e-123 444.9 354 70.6
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 4.4e-122 441.8 347 70.6
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 7.5e-122 441.0 353 68.8
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 1.1e-120 437.2 339 71.1
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 4.1e-120 435.3 340 70.6
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 7.0e-120 434.5 353 68.8
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 1.2e-119 433.7 349 69.3
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 1.2e-119 433.7 353 68.6
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 2.6e-119 432.6 329 70.2
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 4.5e-119 431.8 355 68.2
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 4.5e-119 431.8 357 67.5
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 1.0e-118 430.6 356 68.3
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 1.3e-118 430.3 294 76.5
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 1.3e-118 430.3 315 73.7
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 2.2e-118 429.5 329 70.5
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 2.2e-118 429.5 329 69.3
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 2.9e-118 429.1 337 70.6
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 5.0e-118 428.3 353 67.7
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 1.9e-117 426.4 342 69.0
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 4.2e-117 425.2 329 69.9
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 4.2e-117 425.2 355 67.9
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 5.5e-117 424.9 342 67.8
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 7.2e-117 424.5 328 70.4
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 7.2e-117 424.5 329 69.3
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 7.2e-117 424.5 329 69.3
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 2.1e-116 422.9 357 65.8
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 2.1e-116 422.9 344 69.2
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 2.1e-116 422.9 329 69.6
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 2.7e-116 422.5 329 69.6
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 3.6e-116 422.2 358 66.5
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 3.6e-116 422.2 329 69.6
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 4.7e-116 421.8 360 65.6
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 4.7e-116 421.8 342 68.1
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 6.1e-116 421.4 344 67.7
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 8.0e-116 421.0 373 64.6
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 8.0e-116 421.0 329 69.0
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 8.0e-116 421.0 355 67.0
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 1.0e-115 420.6 329 70.5
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 1.8e-115 419.9 344 67.4
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 1.8e-115 419.9 318 70.8
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 3.0e-115 419.1 363 63.9
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 6.8e-115 417.9 330 70.6
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 1.2e-114 417.2 347 67.4
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.5e-114 416.8 363 63.1
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 4.4e-114 415.2 349 67.6
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 4.4e-114 415.2 351 67.0
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 5.7e-114 414.8 353 66.3
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 5.7e-114 414.8 331 68.9
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 7.5e-114 414.5 354 66.4
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 9.8e-114 414.1 345 67.2
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.3e-113 413.7 354 65.8
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 1.3e-113 413.7 353 66.6
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 3.7e-113 412.1 351 66.4
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 6.3e-113 411.4 353 65.2
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 6.3e-113 411.4 353 65.2
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 8.3e-113 411.0 350 65.1
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 8.3e-113 411.0 317 70.7
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 1.4e-112 410.2 353 65.2
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 3.1e-112 409.1 329 66.9
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 5.4e-112 408.3 353 64.9
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 1.2e-111 407.1 353 64.6
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 1.2e-111 407.1 356 65.2
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 2.0e-111 406.4 329 66.9
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 2.7e-111 406.0 360 65.3
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 2.7e-111 406.0 311 71.1
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 2.7e-111 406.0 390 61.0
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 3.5e-111 405.6 353 64.3
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 3.5e-111 405.6 369 63.4
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 6.5e-110 401.4 329 66.0
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 8.5e-110 401.0 311 69.5
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 8.5e-110 401.0 311 70.1
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 1.1e-109 400.6 325 69.5
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 4.0e-107 392.1 348 62.9
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 2.2e-105 386.3 322 67.1
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 1.1e-104 384.0 316 66.1
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 1.1e-104 384.0 313 65.5
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 2.0e-103 379.8 302 68.5
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 4.5e-103 378.6 394 58.1
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 4.7e-100 368.6 287 69.7
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 3.0e-99 365.9 323 64.1
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 8.9e-99 364.4 338 62.1
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 1.5e-98 363.6 322 64.0
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 6.4e-97 358.2 337 59.6
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 8.3e-97 357.8 353 60.3
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 5.0e-94 348.6 286 69.6
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 5.0e-94 348.6 283 67.8
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 5.0e-94 348.6 425 52.7
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 3.1e-91 339.3 280 66.8
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 3.1e-91 339.3 300 64.0
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 3.7e-89 332.4 344 57.8
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 6.4e-89 331.6 316 60.4
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 3.2e-88 329.3 313 58.1
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 1.6e-87 327.0 290 62.8
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 2.8e-84 316.2 298 57.0
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 1.2e-82 310.8 326 53.4
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 3.2e-80 302.8 242 69.0
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 8.9e-75 284.6 255 60.4
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 1.9e-69 266.9 278 56.5
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 5.6e-69 265.4 165 78.8
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 2.2e-65 253.4 221 64.3
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 2.1e-63 246.9 303 48.5
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.2e-58 231.1 230 56.5
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 1.5e-58 230.7 313 45.4
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 4.2e-56 222.6 308 44.8
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 2.4e-51 206.8 192 62.5
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 1.3e-49 201.1 187 61.5
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 2.4e-48 196.8 220 50.0
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 2.1e-47 193.7 220 52.3
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 2.7e-47 193.4 165 61.2
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 9.0e-43 178.3 201 55.7
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 2.0e-42 177.2 167 63.5
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.0e-41 174.9 214 49.5
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 3.8e-41 172.9 122 67.2
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 5.3e-35 152.5 100 74.0
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 1.0e-33 148.3 139 64.0
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 1.0e-33 148.3 122 60.7
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 6.5e-33 145.6 109 61.5
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 8.5e-33 145.2 126 65.9
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 1.2e-31 141.4 234 39.3
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 1.0e-30 138.3 154 53.2
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 8.7e-30 135.2 101 72.3
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 1.1e-19 101.7 68 69.1
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 3.1e-19 100.1 60 83.3
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 9.1e-19 98.6 59 84.7
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 2.6e-18 97.1 88 63.6
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.6e-18 97.1 59 86.4
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 4.5e-18 96.3 276 26.1
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 6.5e-17 92.4 238 31.9
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.4e-16 91.3 54 75.9
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 2.3e-14 84.0 62 66.1
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 3.9e-14 83.2 55 70.9
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.1e-08 65.1 43 69.8
DCAR_023607 Daucus carota HOM05D005313 ORTHO05D006317 5.5e-08 62.8 71 53.5
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 9.4e-08 62.0 36 75.0
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 3.6e-07 60.1 61 50.8
Oeu045873.1 Olea europaea HOM05D005313 ORTHO05D006317 1.4e-06 58.2 34 76.5


User provided reference genes

Program Settings