Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15679 Nelumbo nucifera HOM05D006202 ORTHO05D008227 5.9e-247 857.1 424 100.0
TAR369G0651 Trochodendron aralioides HOM05D006202 ORTHO05D008227 1.4e-187 659.8 407 79.4
Dinv43939 Davidia involucrata HOM05D006202 ORTHO05D008227 1.6e-183 646.4 406 78.3
QL04p001552 Quercus lobata HOM05D006202 ORTHO05D008227 9.6e-181 637.1 405 76.3
Aqoxy1G00030 Aquilegia oxysepala HOM05D006202 ORTHO05D008227 2.4e-179 632.5 408 77.2
MBI04_g33961_MAGBIO Magnolia biondii HOM05D006202 ORTHO05D008227 5.2e-179 631.3 408 77.2
CSS0029964 Camellia sinensis var. sinensis HOM05D006202 ORTHO05D008227 1.2e-178 630.2 407 77.1
PSO384G0467 Papaver somniferum HOM05D006202 ORTHO05D008227 2.0e-178 629.4 407 77.9
Potri.009G024100 Populus trichocarpa HOM05D006202 ORTHO05D008227 8.4e-177 624.0 406 75.9
GSVIVG01001357001 Vitis vinifera HOM05D006202 ORTHO05D008227 8.4e-177 624.0 431 72.9
Glyma.15G268400 Glycine max HOM05D006202 ORTHO05D008227 1.2e-175 620.2 408 75.5
Cfa010710 Carpinus fangiana HOM05D006202 ORTHO05D008227 2.1e-175 619.4 368 81.5
PSO339G0702 Papaver somniferum HOM05D006202 ORTHO05D008227 4.6e-175 618.2 373 81.5
arahy.Tifrunner.gnm1.ann1.Y9YBLC Arachis hypogaea HOM05D006202 ORTHO05D008227 6.0e-175 617.8 376 79.5
Haze_03268 Corylus avellana HOM05D006202 ORTHO05D008227 6.0e-175 617.8 406 75.1
Manes.10G152100 Manihot esculenta HOM05D006202 ORTHO05D008227 1.3e-174 616.7 406 74.6
Lj9C620G10 Lonicera japonica HOM05D006202 ORTHO05D008227 2.3e-174 615.9 347 84.1
Prupe.1G561800 Prunus persica HOM05D006202 ORTHO05D008227 2.3e-174 615.9 412 74.0
RcHm_v2.0_Chr1g0313251 Rosa chinensis HOM05D006202 ORTHO05D008227 2.3e-174 615.9 347 84.1
Oeu060701.1 Olea europaea HOM05D006202 ORTHO05D008227 3.0e-174 615.5 387 77.5
CiPaw.02G012300 Carya illinoinensis HOM05D006202 ORTHO05D008227 3.9e-174 615.1 376 78.7
Rhsim03G0068600 Rhododendron simsii HOM05D006202 ORTHO05D008227 3.9e-174 615.1 388 77.8
Sopen01g033340 Solanum pennellii HOM05D006202 ORTHO05D008227 5.1e-174 614.8 394 76.1
Aa31LG5G5070 Aethionema arabicum HOM05D006202 ORTHO05D008227 6.6e-174 614.4 406 74.1
Nitab4.5_0000468g0040 Nicotiana tabacum HOM05D006202 ORTHO05D008227 6.6e-174 614.4 372 79.3
Actinidia21584 Actinidia chinensis HOM05D006202 ORTHO05D008227 8.7e-174 614.0 406 75.4
Lalb_Chr01g0015151 Lupinus albus HOM05D006202 ORTHO05D008227 8.7e-174 614.0 377 77.7
Glyma.08G157800 Glycine max HOM05D006202 ORTHO05D008227 1.1e-173 613.6 408 74.5
Nitab4.5_0010722g0010 Nicotiana tabacum HOM05D006202 ORTHO05D008227 1.1e-173 613.6 372 79.6
arahy.Tifrunner.gnm1.ann1.03K86Q Arachis hypogaea HOM05D006202 ORTHO05D008227 1.5e-173 613.2 377 79.0
Cpa.g.sc189.4 Carica papaya HOM05D006202 ORTHO05D008227 1.5e-173 613.2 373 80.7
Cc02_g26930 Coffea canephora HOM05D006202 ORTHO05D008227 2.5e-173 612.5 350 84.3
vmacro21164 Vaccinium macrocarpon HOM05D006202 ORTHO05D008227 9.6e-173 610.5 347 84.1
THA.LOC104815880 Tarenaya hassleriana HOM05D006202 ORTHO05D008227 1.6e-172 609.8 411 74.7
Lj3g0005275 Lotus japonicus HOM05D006202 ORTHO05D008227 6.2e-172 607.8 377 78.0
TWI73G0821 Tripterygium wilfordii HOM05D006202 ORTHO05D008227 8.1e-172 607.4 347 81.8
Solyc01g073730.4 Solanum lycopersicum HOM05D006202 ORTHO05D008227 1.1e-171 607.1 394 75.4
arahy.Tifrunner.gnm1.ann1.YK6119 Arachis hypogaea HOM05D006202 ORTHO05D008227 1.8e-171 606.3 377 78.8
CAN.G129.48 Capsicum annuum HOM05D006202 ORTHO05D008227 5.3e-171 604.7 391 75.7
PGSC0003DMG401028974 Solanum tuberosum HOM05D006202 ORTHO05D008227 5.3e-171 604.7 347 82.4
Peaxi162Scf00402g00616 Petunia axillaris HOM05D006202 ORTHO05D008227 9.0e-171 604.0 372 78.0
ATR0605G327 Amborella trichopoda HOM05D006202 ORTHO05D008227 2.6e-170 602.4 397 76.1
Phvul.005G042000 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 3.4e-170 602.1 377 77.5
Migut.I00539 Erythranthe guttata HOM05D006202 ORTHO05D008227 7.6e-170 600.9 377 78.0
VMungo1080G0924 Vigna mungo HOM05D006202 ORTHO05D008227 3.8e-169 598.6 376 77.4
ClCG09G003710 Citrullus lanatus HOM05D006202 ORTHO05D008227 6.4e-169 597.8 410 72.7
MD02G1319400 Malus domestica HOM05D006202 ORTHO05D008227 6.4e-169 597.8 352 81.2
Migut.B01400 Erythranthe guttata HOM05D006202 ORTHO05D008227 1.1e-168 597.0 363 79.6
ECA234G4350 Erigeron canadensis HOM05D006202 ORTHO05D008227 2.4e-168 595.9 350 81.7
FvH4_5g30330 Fragaria vesca HOM05D006202 ORTHO05D008227 3.2e-168 595.5 345 83.5
Sed0014986 Sechium edule HOM05D006202 ORTHO05D008227 3.2e-168 595.5 383 76.0
SGA_v2.0_scaffold5G03106 Striga asiatica HOM05D006202 ORTHO05D008227 4.2e-168 595.1 366 79.0
TPR.G16148 Trifolium pratense HOM05D006202 ORTHO05D008227 4.2e-168 595.1 406 72.4
DCAR_001807 Daucus carota HOM05D006202 ORTHO05D008227 5.4e-168 594.7 347 81.8
FAN04G1730 Fragaria x ananassa HOM05D006202 ORTHO05D008227 5.4e-168 594.7 345 82.9
AT2G31955 Arabidopsis thaliana HOM05D006202 ORTHO05D008227 7.1e-168 594.3 376 76.1
Medtr2g061710 Medicago truncatula HOM05D006202 ORTHO05D008227 7.1e-168 594.3 364 78.8
FAN18G2168 Fragaria x ananassa HOM05D006202 ORTHO05D008227 1.2e-167 593.6 345 83.2
Thecc.09G200100 Theobroma cacao HOM05D006202 ORTHO05D008227 1.6e-167 593.2 371 77.6
Sc10g0005310 Simmondsia chinensis HOM05D006202 ORTHO05D008227 2.1e-167 592.8 354 80.5
FAN13G0191 Fragaria x ananassa HOM05D006202 ORTHO05D008227 2.7e-167 592.4 345 83.2
Sabra09G0015400 Salix brachista HOM05D006202 ORTHO05D008227 6.0e-167 591.3 460 66.1
MSTRG.28100 Avicennia marina HOM05D006202 ORTHO05D008227 1.3e-166 590.1 377 76.7
Atru.chr11.2704 Acer truncatum HOM05D006202 ORTHO05D008227 1.8e-166 589.7 374 76.7
SalBow5G5675 Salvia bowleyana HOM05D006202 ORTHO05D008227 1.8e-166 589.7 406 73.4
Ciclev10031726m.g Citrus clementina HOM05D006202 ORTHO05D008227 2.3e-166 589.3 411 71.5
Thhalv10016791m.g Eutrema salsugineum HOM05D006202 ORTHO05D008227 2.3e-166 589.3 345 82.0
FAN08G1924 Fragaria x ananassa HOM05D006202 ORTHO05D008227 2.3e-166 589.3 347 81.8
Carub.0004s1327 Capsella rubella HOM05D006202 ORTHO05D008227 3.0e-166 589.0 380 76.3
AUR62036652 Chenopodium quinoa HOM05D006202 ORTHO05D008227 3.0e-166 589.0 372 75.5
AL4G27290 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 3.9e-166 588.6 375 76.0
Eucgr.A00275 Eucalyptus grandis HOM05D006202 ORTHO05D008227 8.7e-166 587.4 350 79.7
Sp4g14320 Schrenkiella parvula HOM05D006202 ORTHO05D008227 8.7e-166 587.4 406 71.9
Ca_03201_v3 Cicer arietinum L. HOM05D006202 ORTHO05D008227 1.1e-165 587.0 364 77.7
Zm00001eb244230 Zea mays HOM05D006202 ORTHO05D008227 1.1e-165 587.0 364 76.9
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 1.5e-165 586.6 414 71.3
HanXRQChr16g0520351 Helianthus annuus HOM05D006202 ORTHO05D008227 1.5e-165 586.6 350 80.0
AUR62034625 Chenopodium quinoa HOM05D006202 ORTHO05D008227 3.3e-165 585.5 372 75.0
Ah.14g085700 Amaranthus hybridus HOM05D006202 ORTHO05D008227 1.3e-164 583.6 363 76.0
Eucgr.A00079 Eucalyptus grandis HOM05D006202 ORTHO05D008227 2.1e-164 582.8 358 78.5
BcaC01g05926 Brassica carinata HOM05D006202 ORTHO05D008227 4.8e-164 581.6 357 79.3
Lsat_1_v5_gn_4_46560 Lactuca sativa HOM05D006202 ORTHO05D008227 6.2e-164 581.3 406 71.9
BraA03t11059Z Brassica rapa HOM05D006202 ORTHO05D008227 8.1e-164 580.9 357 79.3
Os12g0507000 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 3.1e-163 578.9 369 75.1
Phvul.005G041900 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 1.2e-162 577.0 327 83.8
Duzib168G0949 Durio zibethinus HOM05D006202 ORTHO05D008227 1.5e-162 576.6 358 78.2
BolC3t14483H Brassica oleracea HOM05D006202 ORTHO05D008227 4.5e-162 575.1 358 78.8
Os02g0258900 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 5.8e-162 574.7 345 78.6
CANSAT80G0703 Cannabis sativa HOM05D006202 ORTHO05D008227 2.1e-159 566.2 350 78.3
CsaV3_7G031490 Cucumis sativus L. HOM05D006202 ORTHO05D008227 6.0e-159 564.7 319 84.0
HPP92_023784 Vanilla planifolia HOM05D006202 ORTHO05D008227 1.0e-158 563.9 355 76.9
unitig_749.g13486 Utricularia gibba HOM05D006202 ORTHO05D008227 3.0e-158 562.4 350 76.3
EL10Ac3g06182 Beta vulgaris HOM05D006202 ORTHO05D008227 3.9e-158 562.0 363 73.6
Gohir.D08G018900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 3.9e-158 562.0 408 67.9
Gorai.004G013400 Gossypium raimondii HOM05D006202 ORTHO05D008227 1.1e-157 560.5 408 67.9
Gohir.A08G008900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 1.3e-156 557.0 408 66.9
A03p17940 Brassica napus HOM05D000200 ORTHO05D000262 5.3e-147 525.0 334 76.9
C03p21020 Brassica napus HOM05D000200 ORTHO05D000262 5.9e-146 521.5 327 76.8
SEGI_40145 Sequoiadendron giganteum HOM05D006202 ORTHO05D008227 1.1e-141 507.3 360 69.4
Mapoly0045s0149 Marchantia polymorpha HOM05D006202 ORTHO05D008227 2.5e-141 506.1 366 67.5
Actinidia15848 Actinidia chinensis HOM05D006202 ORTHO05D008227 2.2e-140 503.1 402 66.2
Pp3c5_22480 Physcomitrium patens HOM05D006202 ORTHO05D008227 8.2e-140 501.1 330 71.5
CDE06G1615 Ceratophyllum demersum HOM05D006202 ORTHO05D008227 1.5e-138 496.9 351 70.7
CBR_g36677 Chara braunii HOM05D006202 ORTHO05D008227 3.4e-138 495.7 357 65.8
SMO361G0213 Selaginella moellendorffii HOM05D006202 ORTHO05D008227 1.7e-137 493.4 357 65.8
arahy.Tifrunner.gnm1.ann1.JS3HL2 Arachis hypogaea HOM05D006202 ORTHO05D008227 1.8e-134 483.4 377 66.3
Potri.001G230604 Populus trichocarpa HOM05D006202 ORTHO05D008227 8.2e-132 474.6 376 65.2
TAR369G1105 Trochodendron aralioides HOM05D006202 ORTHO05D008227 1.4e-126 457.2 298 75.8
AL80U10060 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 3.7e-124 449.1 375 62.7
MCO15G349 Micromonas commoda HOM05D006202 ORTHO05D008227 6.7e-118 428.3 329 60.5
MELO3C023505.2 Cucumis melo HOM05D006202 ORTHO05D008227 1.1e-112 411.0 296 69.3
Hund12940 Selenicereus undatus HOM05D006202 ORTHO05D008227 2.1e-111 406.8 257 76.3
Cre13.g602901 Chlamydomonas reinhardtii HOM05D006202 ORTHO05D008227 8.0e-111 404.8 376 55.9
CARHR125690 Cardamine hirsuta HOM05D006202 ORTHO05D008227 1.2e-109 401.0 263 74.1
Psat1g128920 Pisum sativum HOM05D006202 ORTHO05D008227 2.4e-107 393.3 259 74.5
PRCOL_00002201 Prasinoderma coloniale HOM05D006202 ORTHO05D008227 2.0e-106 390.2 339 55.5
Pp3c6_6420 Physcomitrium patens HOM05D006202 ORTHO05D008227 3.0e-102 376.3 327 58.4
Cfa022704 Carpinus fangiana HOM05D006202 ORTHO05D008227 8.0e-95 351.7 403 46.2
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 3.4e-69 266.5 287 45.6
SHI12251 Sapria himalayana HOM05D006202 ORTHO05D008227 2.9e-68 263.5 175 74.9
SHI12244 Sapria himalayana HOM05D006202 ORTHO05D008227 6.9e-62 242.3 190 64.7
AagrBONN_evm.TU.Sc2ySwM_344.4902 Anthoceros agrestis HOM05D006202 ORTHO05D008227 3.8e-60 236.5 180 64.4
SHI12245 Sapria himalayana HOM05D006202 ORTHO05D008227 1.6e-50 204.5 179 60.9
ATR0605G108 Amborella trichopoda HOM05D006202 ORTHO05D008227 2.4e-46 190.7 131 74.8
SHI34064 Sapria himalayana HOM05D006202 ORTHO05D367267 2.6e-16 90.9 127 46.5
A05p13580 Brassica napus HOM05D006202 ORTHO05D033532 7.7e-13 79.3 91 49.5
BraA05t20295Z Brassica rapa HOM05D006202 ORTHO05D033532 7.7e-13 79.3 91 49.5
TAR623G0116 Trochodendron aralioides HOM05D006202 ORTHO05D414173 2.0e-08 64.7 35 77.1


User provided reference genes

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