Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15616 Nelumbo nucifera HOM05D005806 ORTHO05D007119 2.4e-22 107.8 50 100.0
Nn4g25745 Nelumbo nucifera HOM05D005806 ORTHO05D007119 8.8e-17 89.4 44 90.9
Nn3g21558 Nelumbo nucifera HOM05D005806 ORTHO05D007119 6.9e-14 79.7 44 79.5
MBI18_g21793_MAGBIO Magnolia biondii HOM05D005806 ORTHO05D007119 9.1e-14 79.3 48 75.0
TAR362G1179 Trochodendron aralioides HOM05D005806 ORTHO05D007119 4.5e-13 77.0 48 72.9
TAR365G0056 Trochodendron aralioides HOM05D005806 ORTHO05D007119 4.5e-13 77.0 44 77.3
TAR365G0831 Trochodendron aralioides HOM05D005806 ORTHO05D007119 4.5e-13 77.0 44 77.3
TAR633G1904 Trochodendron aralioides HOM05D005806 ORTHO05D007119 5.9e-13 76.6 44 77.3
Dinv44345 Davidia involucrata HOM05D005806 ORTHO05D007119 2.2e-12 74.7 48 66.7
Aqoxy5G00792 Aquilegia oxysepala HOM05D005806 ORTHO05D007119 5.0e-12 73.6 44 70.5
CSS0028282 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 5.0e-12 73.6 45 73.3
Oeu054004.1 Olea europaea HOM05D005806 ORTHO05D007119 6.5e-12 73.2 44 70.5
Lsat_1_v5_gn_6_78121 Lactuca sativa HOM05D005806 ORTHO05D007119 1.9e-11 71.6 44 68.2
Actinidia40301 Actinidia chinensis HOM05D005806 ORTHO05D007119 3.2e-11 70.9 45 71.1
arahy.Tifrunner.gnm1.ann1.TZ6N57 Arachis hypogaea HOM05D005806 ORTHO05D007119 3.2e-11 70.9 51 68.6
arahy.Tifrunner.gnm1.ann1.T7VR84 Arachis hypogaea HOM05D005806 ORTHO05D007119 7.2e-11 69.7 51 64.7
CSS0038808 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 7.2e-11 69.7 45 68.9
CDE12G0749 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 7.2e-11 69.7 52 61.5
Cc03_g01460 Coffea canephora HOM05D005806 ORTHO05D007119 9.4e-11 69.3 44 68.2
GSVIVG01035100001 Vitis vinifera HOM05D005806 ORTHO05D007119 9.4e-11 69.3 46 69.6
CDE01G0725 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 1.2e-10 68.9 48 62.5
Gorai.011G193400 Gossypium raimondii HOM05D005806 ORTHO05D007119 1.2e-10 68.9 50 66.0
Oeu006424.1 Olea europaea HOM05D005806 ORTHO05D007119 1.2e-10 68.9 44 65.9
SalBow5G0238 Salvia bowleyana HOM05D005806 ORTHO05D007119 1.2e-10 68.9 44 63.6
Duzib212G0552 Durio zibethinus HOM05D005806 ORTHO05D007119 1.6e-10 68.6 49 67.3
Cfa015433 Carpinus fangiana HOM05D005806 ORTHO05D007119 2.7e-10 67.8 54 59.3
QL06p010760 Quercus lobata HOM05D005806 ORTHO05D007119 2.7e-10 67.8 53 62.3
Thecc.04G290100 Theobroma cacao HOM05D005806 ORTHO05D007119 2.7e-10 67.8 48 68.8
Phvul.003G107800 Phaseolus vulgaris HOM05D005806 ORTHO05D007119 3.6e-10 67.4 47 70.2
Haze_01151 Corylus avellana HOM05D005806 ORTHO05D007119 4.7e-10 67.0 54 59.3
Sed0007282 Sechium edule HOM05D005806 ORTHO05D007119 4.7e-10 67.0 47 72.3
VMungo1215G2854 Vigna mungo HOM05D005806 ORTHO05D007119 4.7e-10 67.0 47 70.2
ClCG05G006280 Citrullus lanatus HOM05D005806 ORTHO05D007119 6.1e-10 66.6 48 70.8
HanXRQChr03g0084151 Helianthus annuus HOM05D005806 ORTHO05D007119 6.1e-10 66.6 46 65.2
Manes.15G010100 Manihot esculenta HOM05D005806 ORTHO05D007119 6.1e-10 66.6 53 62.3
Eucgr.B01574 Eucalyptus grandis HOM05D005806 ORTHO05D007119 7.9e-10 66.2 46 63.0
CSS0004144 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 1.0e-09 65.9 45 66.7
Glyma.07G244900 Glycine max HOM05D005806 ORTHO05D007119 1.0e-09 65.9 47 68.1
MD16G1163000 Malus domestica HOM05D005806 ORTHO05D007119 1.0e-09 65.9 43 72.1
Hund20516 Selenicereus undatus HOM05D005806 ORTHO05D007119 1.0e-09 65.9 44 65.9
TWI09G1342 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 1.0e-09 65.9 52 61.5
CsaV3_3G014910 Cucumis sativus L. HOM05D005806 ORTHO05D007119 1.4e-09 65.5 47 68.1
Duzib151G0580 Durio zibethinus HOM05D005806 ORTHO05D007119 1.4e-09 65.5 48 66.7
Glyma.17G028900 Glycine max HOM05D005806 ORTHO05D007119 1.4e-09 65.5 48 66.7
RcHm_v2.0_Chr4g0423561 Rosa chinensis HOM05D005806 ORTHO05D007119 1.4e-09 65.5 44 75.0
HPP92_002231 Vanilla planifolia HOM05D005806 ORTHO05D007119 1.4e-09 65.5 45 64.4
CiPaw.01G145000 Carya illinoinensis HOM05D005806 ORTHO05D007119 1.8e-09 65.1 49 63.3
MELO3C006687.2 Cucumis melo HOM05D005806 ORTHO05D007119 1.8e-09 65.1 47 63.8
TWI73G0620 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 1.8e-09 65.1 52 61.5
COL.COLO4_13808 Corchorus olitorius HOM05D005806 ORTHO05D007119 2.3e-09 64.7 48 68.8
DCAR_002485 Daucus carota HOM05D005806 ORTHO05D007119 2.3e-09 64.7 44 68.2
Migut.N00070 Erythranthe guttata HOM05D005806 ORTHO05D007119 2.3e-09 64.7 45 64.4
Dinv29717 Davidia involucrata HOM05D005806 ORTHO05D007119 3.0e-09 64.3 45 64.4
Lalb_Chr13g0298181 Lupinus albus HOM05D005806 ORTHO05D007119 3.0e-09 64.3 47 61.7
Prupe.1G130400 Prunus persica HOM05D005806 ORTHO05D007119 3.0e-09 64.3 43 74.4
Ah.13g074780 Amaranthus hybridus HOM05D005806 ORTHO05D007119 3.9e-09 63.9 45 66.7
MSTRG.10119 Avicennia marina HOM05D005806 ORTHO05D007119 3.9e-09 63.9 45 62.2
Manes.03G199200 Manihot esculenta HOM05D005806 ORTHO05D007119 3.9e-09 63.9 52 59.6
SGA_v2.0_scaffold91G28032 Striga asiatica HOM05D005806 ORTHO05D007119 3.9e-09 63.9 44 65.9
PSO210G6439 Papaver somniferum HOM05D005806 ORTHO05D007119 5.1e-09 63.5 45 64.4
PSO832G4515 Papaver somniferum HOM05D005806 ORTHO05D007119 5.1e-09 63.5 45 64.4
SEGI_25850 Sequoiadendron giganteum HOM05D005806 ORTHO05D007119 5.1e-09 63.5 44 59.1
EL10Ac3g06659 Beta vulgaris HOM05D005806 ORTHO05D007119 6.7e-09 63.2 45 66.7
Atru.chr4.2914 Acer truncatum HOM05D005806 ORTHO05D007119 8.8e-09 62.8 46 63.0
AUR62015254 Chenopodium quinoa HOM05D005806 ORTHO05D007119 8.8e-09 62.8 45 62.2
AUR62018055 Chenopodium quinoa HOM05D005806 ORTHO05D007119 8.8e-09 62.8 45 62.2
HanXRQChr13g0413981 Helianthus annuus HOM05D005806 ORTHO05D007119 8.8e-09 62.8 37 73.0
Sc13g0003160 Simmondsia chinensis HOM05D005806 ORTHO05D007119 8.8e-09 62.8 46 60.9
FvH4_4g18770 Fragaria vesca HOM05D005806 ORTHO05D007119 1.1e-08 62.4 44 68.2
FAN12G2548 Fragaria x ananassa HOM05D005806 ORTHO05D007119 1.1e-08 62.4 44 68.2
FAN12G3921 Fragaria x ananassa HOM05D005806 ORTHO05D007119 1.1e-08 62.4 44 68.2
FAN17G0801 Fragaria x ananassa HOM05D005806 ORTHO05D007119 1.1e-08 62.4 44 68.2
Nitab4.5_0012392g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 1.1e-08 62.4 45 64.4
Peaxi162Scf00065g01121 Petunia axillaris HOM05D005806 ORTHO05D007119 1.1e-08 62.4 45 64.4
FAN07G1609 Fragaria x ananassa HOM05D005806 ORTHO05D007119 1.5e-08 62.0 44 70.5
MD13G1163500 Malus domestica HOM05D005806 ORTHO05D007119 1.5e-08 62.0 42 71.4
Ca_21476_v3 Cicer arietinum L. HOM05D005806 ORTHO05D007119 3.3e-08 60.8 44 68.2
Nitab4.5_0002215g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 3.3e-08 60.8 45 64.4
Potri.010G007000 Populus trichocarpa HOM05D005806 ORTHO05D007119 3.3e-08 60.8 52 59.6
Sabra10G0005700 Salix brachista HOM05D005806 ORTHO05D007119 3.3e-08 60.8 52 57.7
CANSAT78G0145 Cannabis sativa HOM05D005806 ORTHO05D007119 4.4e-08 60.5 44 56.8
ECA240G3979 Erigeron canadensis HOM05D005806 ORTHO05D007119 4.4e-08 60.5 48 56.2
Gohir.D10G172900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 4.4e-08 60.5 52 57.7
Solyc01g066050.3 Solanum lycopersicum HOM05D005806 ORTHO05D007119 4.4e-08 60.5 45 60.0
Sopen01g027600 Solanum pennellii HOM05D005806 ORTHO05D007119 4.4e-08 60.5 45 60.0
PGSC0003DMG400016813 Solanum tuberosum HOM05D005806 ORTHO05D007119 4.4e-08 60.5 45 60.0
vmacro23238 Vaccinium macrocarpon HOM05D005806 ORTHO05D007119 5.7e-08 60.1 52 57.7
Lj3A825T23 Lonicera japonica HOM05D005806 ORTHO05D007119 9.7e-08 59.3 41 63.4
Psat4g025560 Pisum sativum HOM05D005806 ORTHO05D007119 1.3e-07 58.9 44 63.6
Cpa.g.sc50.151 Carica papaya HOM05D005806 ORTHO05D007119 1.7e-07 58.5 51 56.9
Os03g0340700 Oryza sativa ssp. japonica HOM05D005806 ORTHO05D007119 2.2e-07 58.2 41 63.4
Rhsim04G0227400 Rhododendron simsii HOM05D005806 ORTHO05D007119 4.8e-07 57.0 44 59.1
Lj4g0013254 Lotus japonicus HOM05D005806 ORTHO05D007119 8.2e-07 56.2 47 57.4
Aa31LG8G3830 Aethionema arabicum HOM05D005806 ORTHO05D007119 1.1e-06 55.8 45 57.8
Thhalv10020624m.g Eutrema salsugineum HOM05D005806 ORTHO05D007119 1.4e-06 55.5 46 56.5
Gohir.A10G166900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 2.4e-06 54.7 52 53.8
Lalb_Chr07g0182271 Lupinus albus HOM05D005806 ORTHO05D007119 2.4e-06 54.7 46 58.7
Sp3g15010 Schrenkiella parvula HOM05D005806 ORTHO05D007119 2.4e-06 54.7 46 56.5
Ciclev10004804m.g Citrus clementina HOM05D005806 ORTHO05D007119 3.1e-06 54.3 49 55.1
Zm00001eb016320 Zea mays HOM05D005806 ORTHO05D007119 4.1e-06 53.9 41 58.5
AT3G16760 Arabidopsis thaliana HOM05D005806 ORTHO05D007119 5.3e-06 53.5 44 59.1
CARHR092010 Cardamine hirsuta HOM05D005806 ORTHO05D007119 5.3e-06 53.5 46 54.3
CAN.G14.19 Capsicum annuum HOM05D005806 ORTHO05D007119 7.0e-06 53.1 46 54.3
THA.LOC104802587 Tarenaya hassleriana HOM05D005806 ORTHO05D007119 7.0e-06 53.1 32 68.8


User provided reference genes

Program Settings