Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 2.0e-140 502.7 305 100.0
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 9.3e-53 211.5 310 46.8
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 3.0e-51 206.5 310 45.8
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 6.7e-51 205.3 309 43.0
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 2.5e-50 203.4 315 43.8
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 3.7e-49 199.5 309 42.4
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 1.3e-46 191.0 204 55.4
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 2.9e-46 189.9 310 42.3
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 3.8e-46 189.5 209 55.0
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 5.0e-46 189.1 315 43.5
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 8.5e-46 188.3 311 41.8
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 1.4e-45 187.6 309 43.4
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 4.2e-45 186.0 311 42.4
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 3.6e-44 183.0 198 54.5
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 4.6e-44 182.6 307 41.7
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 1.3e-43 181.0 309 43.4
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 5.1e-43 179.1 330 39.7
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 6.7e-43 178.7 220 51.8
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 8.7e-43 178.3 189 56.1
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 1.9e-42 177.2 203 50.2
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 3.3e-42 176.4 308 42.9
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 3.3e-42 176.4 309 42.1
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 4.3e-42 176.0 313 42.2
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 2.8e-41 173.3 202 53.5
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 6.3e-41 172.2 204 52.0
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 2.4e-40 170.2 308 40.3
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 3.1e-40 169.9 214 49.5
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 5.3e-40 169.1 310 41.3
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 6.9e-40 168.7 204 49.0
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 1.5e-39 167.5 327 40.4
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.6e-39 166.8 209 47.8
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 4.5e-39 166.0 210 50.0
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 5.9e-39 165.6 311 38.9
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 7.7e-39 165.2 204 48.0
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 1.0e-38 164.9 310 40.3
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 1.7e-38 164.1 185 52.4
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 2.2e-38 163.7 250 41.6
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 2.9e-38 163.3 208 50.0
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 2.9e-38 163.3 198 51.5
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 3.8e-38 162.9 215 51.6
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 6.5e-38 162.2 313 37.7
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 6.5e-38 162.2 211 47.9
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 6.5e-38 162.2 210 51.4
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 8.5e-38 161.8 210 51.9
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 1.1e-37 161.4 316 40.5
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 1.9e-37 160.6 211 46.9
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 2.5e-37 160.2 304 39.8
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 2.5e-37 160.2 316 39.2
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 3.2e-37 159.8 192 52.1
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 4.2e-37 159.5 169 55.0
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 4.2e-37 159.5 202 47.0
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 4.2e-37 159.5 199 48.2
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 4.2e-37 159.5 199 49.2
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 5.5e-37 159.1 332 38.6
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 1.2e-36 157.9 212 46.7
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.6e-36 157.5 193 47.7
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 1.6e-36 157.5 187 50.3
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 1.4e-35 154.5 208 47.6
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 2.3e-35 153.7 208 47.6
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 6.7e-35 152.1 192 49.0
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 1.1e-34 151.4 208 48.1
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 1.5e-34 151.0 307 37.8
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 1.5e-34 151.0 212 47.2
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 2.0e-34 150.6 307 38.1
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 2.0e-34 150.6 313 35.8
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 2.0e-34 150.6 206 47.1
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 5.7e-34 149.1 206 46.6
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.3e-33 147.9 195 48.2
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 1.3e-33 147.9 219 50.7
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 3.7e-33 146.4 312 39.1
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 6.3e-33 145.6 161 52.8
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.4e-32 144.4 212 46.2
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.8e-32 144.1 202 47.5
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 1.8e-32 144.1 311 38.6
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 2.4e-32 143.7 325 38.5
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 2.4e-32 143.7 325 38.5
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 2.4e-32 143.7 192 50.0
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 2.4e-32 143.7 213 47.4
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 3.1e-32 143.3 312 38.5
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 3.1e-32 143.3 212 43.9
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 4.1e-32 142.9 186 48.4
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 6.9e-32 142.1 191 49.2
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.2e-31 141.4 225 45.3
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.2e-31 141.4 225 45.3
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 1.2e-31 141.4 212 46.7
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 1.5e-31 141.0 201 45.8
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 1.5e-31 141.0 215 47.0
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.5e-31 141.0 220 45.5
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.5e-31 141.0 220 45.5
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 1.5e-31 141.0 359 33.4
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 2.0e-31 140.6 216 44.9
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.9e-31 139.0 225 44.4
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.9e-31 139.0 219 43.4
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.0e-30 138.3 186 47.8
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.3e-30 137.9 196 46.4
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 1.7e-30 137.5 219 43.8
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.7e-30 137.5 219 43.8
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 1.7e-30 137.5 216 43.5
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 3.8e-30 136.3 219 45.2
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 6.5e-30 135.6 220 44.1
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 6.5e-30 135.6 212 45.8
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.4e-29 134.4 196 45.9
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.9e-29 134.0 219 42.5
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.2e-29 133.3 211 45.5
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 2.7e-28 130.2 206 44.2
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 8.0e-28 128.6 200 45.5
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 1.4e-27 127.9 222 41.4
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 2.3e-27 127.1 184 48.9
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 5.2e-27 125.9 186 42.5
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 5.2e-27 125.9 186 42.5
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 5.2e-27 125.9 221 42.5
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 6.7e-27 125.6 203 42.9
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 1.1e-26 124.8 181 43.1
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.5e-26 124.4 194 42.8
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 1.5e-26 124.4 158 48.1
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 1.5e-26 124.4 158 48.1
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 2.0e-26 124.0 209 41.1
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 2.0e-26 124.0 170 48.2
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 2.6e-26 123.6 186 47.3
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 5.7e-26 122.5 214 44.9
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 7.4e-26 122.1 210 43.3
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 7.4e-26 122.1 142 47.9
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 9.7e-26 121.7 187 42.2
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 9.7e-26 121.7 187 47.6
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 2.8e-25 120.2 213 41.3
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 2.8e-25 120.2 191 41.4
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 4.8e-25 119.4 219 42.9
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 1.8e-24 117.5 196 43.9
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 2.4e-24 117.1 189 41.3
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 3.1e-24 116.7 171 42.1
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 2.0e-23 114.0 197 43.7
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 2.6e-23 113.6 186 43.0
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 5.9e-23 112.5 190 44.2
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 7.7e-23 112.1 177 45.2
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 1.0e-22 111.7 171 44.4
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 1.3e-22 111.3 216 37.0
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 1.3e-22 111.3 201 42.3
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 2.9e-22 110.2 173 45.1
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 3.8e-22 109.8 138 48.6
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 5.0e-22 109.4 156 43.6
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 5.0e-22 109.4 204 41.2
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 6.5e-22 109.0 219 40.2
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 8.5e-22 108.6 216 39.4
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.1e-21 108.2 199 39.2
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 1.9e-21 107.5 223 38.1
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 2.5e-21 107.1 219 40.2
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.5e-21 107.1 201 39.8
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 5.5e-21 105.9 222 37.4
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 5.5e-21 105.9 210 37.1
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 2.1e-20 104.0 120 48.3
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 2.1e-20 104.0 181 40.9
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 6.1e-20 102.4 213 36.6
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 6.1e-20 102.4 189 41.3
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 8.0e-20 102.1 201 40.3
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 2.3e-19 100.5 209 40.2
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 2.3e-19 100.5 172 41.9
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 1.3e-17 94.7 196 39.8
Nn1g03337 Nelumbo nucifera HOM05D003503 ORTHO05D003885 1.7e-17 94.4 50 92.0
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 4.8e-17 92.8 242 34.3
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 4.1e-16 89.7 191 36.6
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 9.1e-16 88.6 184 39.1
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.2e-15 88.2 203 37.9
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 3.5e-15 86.7 177 35.6
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 1.7e-14 84.3 190 40.0
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 8.5e-14 82.0 90 56.7
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 1.9e-13 80.9 281 29.9
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 7.2e-13 79.0 243 34.2
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 6.1e-12 75.9 118 46.6
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 8.0e-12 75.5 69 60.9
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 1.8e-11 74.3 52 73.1
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 2.3e-11 73.9 177 34.5
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 6.8e-11 72.4 207 33.3
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 2.2e-09 67.4 223 30.5
CDE05G1889 Ceratophyllum demersum HOM05D003503 ORTHO05D003885 4.8e-09 66.2 177 29.9
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 1.4e-08 64.7 184 32.1
ECA234G0160 Erigeron canadensis HOM05D003503 ORTHO05D003885 5.4e-08 62.8 59 55.9
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 7.0e-08 62.4 185 33.0
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 7.7e-07 58.9 169 32.0
Zm00001eb079910 Zea mays HOM05D003503 ORTHO05D003885 1.3e-06 58.2 219 32.9
RcHm_v2.0_Chr7g0219161 Rosa chinensis HOM05D003503 ORTHO05D003885 1.7e-06 57.8 101 42.6
Zm00001eb245720 Zea mays HOM05D020767 ORTHO05D003885 2.3e-06 57.4 215 32.6
Actinidia09377 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.9e-06 57.0 77 40.3


User provided reference genes

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