Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 6.7e-199 697.2 366 100.0
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 1.0e-93 347.8 344 59.0
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 1.4e-84 317.4 341 55.7
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 2.5e-84 316.6 341 54.0
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 6.7e-82 308.5 340 52.4
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 1.1e-76 291.2 350 51.7
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 7.2e-76 288.5 342 50.6
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 7.2e-76 288.5 342 49.4
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 3.6e-75 286.2 342 50.3
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 4.4e-73 279.3 347 49.0
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 7.0e-71 271.9 338 48.8
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 9.1e-71 271.6 351 50.1
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 2.2e-69 266.9 344 50.6
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 2.2e-69 266.9 360 46.7
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.1e-68 264.6 345 46.7
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 2.7e-67 260.0 343 47.2
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.7e-67 260.0 342 47.4
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 1.4e-66 257.7 348 49.1
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 4.0e-66 256.1 338 47.3
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 4.4e-65 252.7 355 48.2
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 9.8e-65 251.5 347 48.4
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 1.1e-63 248.1 340 47.9
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 1.8e-63 247.3 341 45.7
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 2.4e-63 246.9 360 43.1
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 3.1e-63 246.5 344 45.9
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 4.1e-63 246.1 338 46.4
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 1.6e-62 244.2 365 43.8
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 2.7e-62 243.4 342 46.2
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 3.5e-62 243.0 344 45.1
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 3.5e-62 243.0 366 43.4
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 7.7e-62 241.9 339 45.4
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.3e-61 241.1 341 46.0
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 6.5e-61 238.8 346 46.2
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 1.9e-60 237.3 342 45.6
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 1.9e-60 237.3 387 40.8
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 2.5e-60 236.9 341 44.3
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 3.2e-60 236.5 369 46.3
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 4.2e-60 236.1 338 45.6
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 1.6e-59 234.2 343 44.6
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 2.1e-59 233.8 301 48.5
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 2.8e-59 233.4 345 46.4
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 3.6e-59 233.0 353 44.8
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 6.1e-59 232.3 340 44.1
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 1.8e-58 230.7 354 43.5
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 2.3e-58 230.3 344 44.5
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 8.8e-58 228.4 342 43.6
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 2.6e-57 226.9 367 40.3
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 4.4e-57 226.1 342 44.4
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 5.7e-57 225.7 348 45.4
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 7.5e-57 225.3 374 46.3
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 9.8e-57 224.9 339 44.8
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 4.9e-56 222.6 340 43.2
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 6.3e-56 222.2 342 43.3
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 1.1e-55 221.5 342 43.9
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 2.4e-55 220.3 266 49.6
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 4.1e-55 219.5 288 49.0
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 4.1e-55 219.5 350 44.0
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 4.1e-55 219.5 350 44.0
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 7.0e-55 218.8 341 43.7
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 9.2e-55 218.4 301 46.8
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 9.2e-55 218.4 285 48.8
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 2.7e-54 216.9 346 45.4
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 5.9e-54 215.7 342 43.9
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 1.3e-53 214.5 340 40.6
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 3.8e-53 213.0 333 43.2
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 8.6e-53 211.8 339 40.7
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 1.1e-52 211.5 326 46.0
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.9e-52 210.7 322 43.8
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 3.3e-52 209.9 386 40.9
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 7.3e-52 208.8 415 38.6
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 9.5e-52 208.4 381 39.9
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 9.5e-52 208.4 350 43.4
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 1.6e-51 207.6 294 46.6
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.1e-51 207.2 296 48.0
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.0e-50 204.9 317 43.8
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 1.8e-50 204.1 340 42.9
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 2.3e-50 203.8 342 41.8
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 1.5e-49 201.1 389 39.1
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 9.8e-49 198.4 391 39.4
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 2.2e-48 197.2 288 44.1
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 6.4e-48 195.7 340 42.1
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 7.0e-47 192.2 415 37.6
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 1.2e-46 191.4 377 38.5
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 2.7e-46 190.3 357 39.2
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 6.6e-45 185.7 190 54.7
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 1.1e-44 184.9 350 40.3
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 3.3e-44 183.3 349 39.8
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 4.3e-44 183.0 192 53.1
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 5.6e-44 182.6 309 42.1
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 1.4e-42 177.9 266 43.6
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 1.8e-42 177.6 198 53.0
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 4.0e-42 176.4 342 38.0
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 6.8e-42 175.6 342 36.8
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 1.5e-41 174.5 344 37.8
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 4.4e-41 172.9 342 39.5
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 7.5e-41 172.2 353 36.0
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 7.5e-41 172.2 378 35.7
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 7.5e-41 172.2 351 36.5
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 1.3e-40 171.4 289 38.8
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 2.9e-40 170.2 273 44.0
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 3.7e-40 169.9 272 40.8
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 3.7e-40 169.9 326 38.3
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 8.3e-40 168.7 348 36.2
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 1.4e-39 167.9 330 39.4
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 7.8e-38 162.2 368 35.6
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 7.8e-38 162.2 270 42.2
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 2.3e-37 160.6 350 35.4
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 1.1e-36 158.3 223 45.7
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 4.3e-36 156.4 354 37.3
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 1.2e-35 154.8 308 37.7
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 1.2e-35 154.8 365 33.2
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 2.8e-35 153.7 347 34.3
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 2.8e-35 153.7 347 34.6
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 6.8e-34 149.1 150 54.7
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 1.2e-33 148.3 366 34.7
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 1.2e-33 148.3 366 34.7
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 1.3e-32 144.8 356 37.6
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 2.2e-32 144.1 329 35.6
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 5.4e-31 139.4 311 33.4
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 7.1e-31 139.0 311 35.7
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 9.2e-31 138.7 161 49.1
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.6e-30 137.9 155 51.0
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 3.6e-27 126.7 311 31.8
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 2.2e-24 117.5 183 44.8
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 3.8e-24 116.7 358 29.1
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 6.4e-24 115.9 200 39.0
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 2.4e-23 114.0 160 47.5
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 6.9e-18 95.9 126 46.8
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 4.9e-16 89.7 82 57.3
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 2.1e-11 74.3 210 30.0


User provided reference genes

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