Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 8.9e-27 122.9 62 100.0
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 1.3e-14 82.4 60 65.0
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 3.0e-14 81.3 61 63.9
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 8.6e-14 79.7 61 60.7
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.1e-13 79.3 61 60.7
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 1.9e-13 78.6 60 66.7
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 4.3e-13 77.4 61 59.0
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 5.6e-13 77.0 60 61.7
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 7.3e-13 76.6 61 62.3
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 9.5e-13 76.3 62 58.1
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 1.2e-12 75.9 61 62.3
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 2.1e-12 75.1 62 58.1
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 2.1e-12 75.1 62 58.1
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 2.8e-12 74.7 60 60.0
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 3.6e-12 74.3 62 56.5
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 3.6e-12 74.3 62 58.1
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 6.2e-12 73.6 62 56.5
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 6.2e-12 73.6 62 56.5
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 6.2e-12 73.6 62 56.5
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 6.2e-12 73.6 62 56.5
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 6.2e-12 73.6 62 56.5
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 8.1e-12 73.2 58 62.1
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 1.1e-11 72.8 62 56.5
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 1.1e-11 72.8 62 56.5
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 1.1e-11 72.8 62 54.8
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 1.1e-11 72.8 60 55.0
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 1.4e-11 72.4 58 58.6
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 2.3e-11 71.6 62 54.8
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 3.1e-11 71.2 62 54.8
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 4.0e-11 70.9 60 55.0
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 6.8e-11 70.1 62 54.8
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 6.8e-11 70.1 62 54.8
Lalb_Chr15g0081811 Lupinus albus HOM05D007252 ORTHO05D009074 6.8e-11 70.1 60 53.3
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 6.8e-11 70.1 60 55.0
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 8.9e-11 69.7 60 56.7
Lalb_Chr15g0081831 Lupinus albus HOM05D007252 ORTHO05D009074 8.9e-11 69.7 60 53.3
Lalb_Chr15g0081851 Lupinus albus HOM05D007252 ORTHO05D009074 8.9e-11 69.7 60 53.3
Lalb_Chr15g0081871 Lupinus albus HOM05D007252 ORTHO05D009074 8.9e-11 69.7 60 53.3
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 8.9e-11 69.7 53 58.5
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 1.2e-10 69.3 61 50.8
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 1.2e-10 69.3 60 53.3
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 1.5e-10 68.9 61 54.1
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 2.0e-10 68.6 60 51.7
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 2.0e-10 68.6 60 51.7
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 3.4e-10 67.8 55 58.2
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 5.8e-10 67.0 58 55.2
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 7.5e-10 66.6 60 55.0
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 7.5e-10 66.6 62 51.6
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 7.5e-10 66.6 62 51.6
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 7.5e-10 66.6 62 51.6
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 7.5e-10 66.6 62 51.6
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 7.5e-10 66.6 60 56.7
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 9.8e-10 66.2 52 59.6
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 9.8e-10 66.2 61 55.7
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 9.8e-10 66.2 58 53.4
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 2.2e-09 65.1 60 50.0
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 4.9e-09 63.9 50 60.0
Cpa.g.c35309 Carica papaya HOM05D007252 ORTHO05D009074 8.3e-09 63.2 47 63.8
Ca_20134_v3 Cicer arietinum L. HOM05D007252 ORTHO05D009074 8.3e-09 63.2 60 50.0
ECA240G2620 Erigeron canadensis HOM05D000132 ORTHO05D000058 8.3e-09 63.2 60 51.7
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 1.1e-08 62.8 60 50.0
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 2.4e-08 61.6 55 56.4
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 3.2e-08 61.2 57 47.4
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 5.4e-08 60.5 55 56.4
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 7.1e-08 60.1 55 54.5
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 7.1e-08 60.1 55 54.5
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 1.2e-07 59.3 59 50.8
Glyma.18G085000 Glycine max HOM05D007252 ORTHO05D009074 1.6e-07 58.9 60 48.3
Psat3g156800 Pisum sativum HOM05D007252 ORTHO05D009074 1.6e-07 58.9 60 48.3
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 3.5e-07 57.8 61 42.6
TPR.G23623 Trifolium pratense HOM05D007252 ORTHO05D009074 4.6e-07 57.4 60 48.3
Migut.M01689 Erythranthe guttata HOM05D007252 ORTHO05D009074 6.0e-07 57.0 62 50.0
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 6.0e-07 57.0 55 47.3
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 1.0e-06 56.2 55 52.7
SalBow8G3523 Salvia bowleyana HOM05D007252 ORTHO05D009074 1.0e-06 56.2 62 50.0
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 1.0e-06 56.2 55 52.7
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 1.3e-06 55.8 58 44.8
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 3.0e-06 54.7 49 53.1
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 3.9e-06 54.3 55 49.1
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 5.1e-06 53.9 49 51.0


User provided reference genes

Program Settings